Details of the Probe

General Information of Probe

Probe ID
LDPC0403
Probe Name
C163
Probe Type
PAL-AfBPP Probe
Structure
2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 313.323
Lipid-water partition coefficient (xlogp) 3.2855
Rotatable Bond Count (rotbonds) 6
Hydrogen Bond Donor Count (hbonddonor) 0
Hydrogen Bond Acceptor Count (hbondacc) 3
Chemical Identifiers
Formula
C15H18F3N3O
Canonical SMILES
C#CCCC1(CCC(=O)N(C)C23CC(C(F)(F)F)(C2)C3)N=N1
InChI
InChI=1S/C15H18F3N3O/c1-3-4-6-14(19-20-14)7-5-11(22)21(2)13-8-12(9-13,10-13)15(16,17)18/h1H,4-10H2,2H3
InChIKey
BQBOCEBJXWOTDN-UHFFFAOYSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

89 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
2-hydroxyacyl-CoA lyase 2 (ILVBL) LDTP00032 5.78  LDD1843 
3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase (EBP) LDTP06325 12.73  LDD1843 
3-ketodihydrosphingosine reductase (KDSR) LDTP05476 10.63  LDD1843 
5'-3' exonuclease PLD3 (PLD3) LDTP08476 5.86  LDD1843 
Acetyl-CoA acetyltransferase, cytosolic (ACAT2) LDTP11321 6.06  LDD1843 
Acid ceramidase (ASAH1) LDTP05905 19.16  LDD1843 
ADP-dependent glucokinase (ADPGK) LDTP11127 8.88  LDD1843 
ADP-ribosylation factor-like protein 1 (ARL1) LDTP03900 6.06  LDD1843 
Aldehyde dehydrogenase family 3 member A2 (ALDH3A2) LDTP04437 10.63  LDD1843 
Alpha-N-acetylglucosaminidase (NAGLU) LDTP04634 7.11  LDD1843 
Arginine--tRNA ligase, cytoplasmic (RARS1) LDTP04601 7.16  LDD1843 
Asparagine synthetase [glutamine-hydrolyzing] (ASNS) LDTP02264 9.58  LDD1843 
ATP-dependent Clp protease proteolytic subunit, mitochondrial (CLPP) LDTP06618 16.45  LDD1843 
Beta-galactosidase (GLB1) LDTP02837 28.84  LDD1843 
CAAX prenyl protease 1 homolog (ZMPSTE24) LDTP01328 11.47  LDD1843 
Calcyclin-binding protein (CACYBP) LDTP12163 6.45  LDD1843 
Carbohydrate sulfotransferase 14 (CHST14) LDTP09096 7.57  LDD1843 
Cartilage-associated protein (CRTAP) LDTP01300 8.82  LDD1843 
Casein kinase I isoform alpha (CSNK1A1) LDTP04209 6.23  LDD1843 
CDGSH iron-sulfur domain-containing protein 1 (CISD1) LDTP12873 23.75  LDD1843 
Ceramide synthase 2 (CERS2) LDTP10329 9.71  LDD1843 
Cytochrome b-c1 complex subunit 8 (UQCRQ) LDTP00486 9.85  LDD1843 
Cytochrome b-c1 complex subunit 9 (UQCR10) LDTP13189 17.51  LDD1843 
Cytochrome b5 type B (CYB5B) LDTP00697 21.26  LDD1843 
Cytochrome P450 20A1 (CYP20A1) LDTP17410 5.82  LDD1843 
dCTP pyrophosphatase 1 (DCTPP1) LDTP12013 9.99  LDD1843 
Delta(14)-sterol reductase LBR (LBR) LDTP06200 10.27  LDD1843 
Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial (ECH1) LDTP05724 6.36  LDD1843 
Dihydrofolate reductase (DHFR) LDTP01769 9.45  LDD1843 
Dolichyldiphosphatase 1 (DOLPP1) LDTP15328 5.82  LDD1843 
E3 ubiquitin-protein ligase BRE1B (RNF40) LDTP01141 8.06  LDD1843 
Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial (ETFDH) LDTP06511 15.56  LDD1843 
Endonuclease domain-containing 1 protein (ENDOD1) LDTP01462 6.28  LDD1843 
Endoplasmic reticulum protein SC65 (P3H4) LDTP09874 7.67  LDD1843 
Epoxide hydrolase 1 (EPHX1) LDTP02175 9.71  LDD1843 
Fatty acid synthase (FASN) LDTP04243 7.73  LDD1843 
Heme oxygenase 1 (HMOX1) LDTP02359 16.91  LDD1843 
Heme oxygenase 2 (HMOX2) LDTP03540 37.53  LDD1843 
Hydroxymethylglutaryl-CoA lyase, mitochondrial (HMGCL) LDTP03794 6.50  LDD1843 
Inactive hydroxysteroid dehydrogenase-like protein 1 (HSDL1) LDTP06787 16.91  LDD1843 
Lanosterol 14-alpha demethylase (CYP51A1) LDTP06648 6.82  LDD1843 
Lathosterol oxidase (SC5D) LDTP01329 11.88  LDD1843 
Leukotriene A-4 hydrolase (LTA4H) LDTP02385 12.47  LDD1843 
Lysine-specific histone demethylase 2 (KDM1B) LDTP09043 7.84  LDD1843 
Lysophospholipid acyltransferase 7 (MBOAT7) LDTP10612 7.01  LDD1843 
Lysosomal acid glucosylceramidase (GBA1) LDTP02005 18.38  LDD1843 
Lysosomal Pro-X carboxypeptidase (PRCP) LDTP04004 10.48  LDD1843 
Lysosomal protective protein (CTSA) LDTP02505 13.83  LDD1843 
Lysosomal thioesterase PPT2 (PPT2) LDTP13620 8.57  LDD1843 
Malonyl-CoA-acyl carrier protein transacylase, mitochondrial (MCAT) LDTP08512 5.62  LDD1843 
Methylsterol monooxygenase 1 (MSMO1) LDTP06477 8.88  LDD1843 
Minor histocompatibility antigen H13 (HM13) LDTP09396 5.94  LDD1843 
Mitochondrial cardiolipin hydrolase (PLD6) LDTP08790 5.90  LDD1843 
N-terminal Xaa-Pro-Lys N-methyltransferase 1 (NTMT1) LDTP11273 6.87  LDD1843 
NAD(P) transhydrogenase, mitochondrial (NNT) LDTP05862 12.38  LDD1843 
NADH dehydrogenase 1 alpha subcomplex subunit 11 (NDUFA11) LDTP08385 6.23  LDD1843 
NADH dehydrogenase 1 beta subcomplex subunit 3 (NDUFB3) LDTP00832 10.78  LDD1843 
NADH dehydrogenase iron-sulfur protein 2, mitochondrial (NDUFS2) LDTP01168 6.41  LDD1843 
NADPH--cytochrome P450 reductase (POR) LDTP02848 6.02  LDD1843 
Nicotinamide phosphoribosyltransferase (NAMPT) LDTP04051 7.73  LDD1843 
Palmitoyl-protein thioesterase 1 (PPT1) LDTP04388 20.97  LDD1843 
Palmitoyl-protein thioesterase ABHD10, mitochondrial (ABHD10) LDTP12628 10.56  LDD1843 
Peptidyl-prolyl cis-trans isomerase FKBP14 (FKBP14) LDTP12720 5.62  LDD1843 
Peptidyl-prolyl cis-trans isomerase FKBP7 (FKBP7) LDTP14218 25.81  LDD1843 
Phosphatidylinositol 3-kinase catalytic subunit type 3 (PIK3C3) LDTP09155 5.94  LDD1843 
Phospholipase A2 group XV (PLA2G15) LDTP09088 6.15  LDD1843 
Plasma membrane calcium-transporting ATPase 1 (ATP2B1) LDTP03024 5.98  LDD1843 
Prenylcysteine oxidase 1 (PCYOX1) LDTP13282 29.45  LDD1843 
Presequence protease, mitochondrial (PITRM1) LDTP07003 13.74  LDD1843 
Probable serine carboxypeptidase CPVL (CPVL) LDTP15988 10.13  LDD1843 
Proteasome subunit beta type-2 (PSMB2) LDTP04285 19.29  LDD1843 
Proteasome subunit beta type-6 (PSMB6) LDTP03418 9.65  LDD1843 
Protein O-GlcNAcase (OGA) LDTP00988 6.23  LDD1843 
Protein-S-isoprenylcysteine O-methyltransferase (ICMT) LDTP01039 7.36  LDD1843 
Putative phospholipase B-like 2 (PLBD2) LDTP09256 7.01  LDD1843 
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (PDE6D) LDTP00907 9.32  LDD1843 
Retinoid-inducible serine carboxypeptidase (SCPEP1) LDTP16032 9.06  LDD1843 
S-methyl-5'-thioadenosine phosphorylase (MTAP) LDTP05758 11.24  LDD1843 
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (ATP2A2) LDTP02860 5.70  LDD1843 
Serum paraoxonase/arylesterase 2 (PON2) LDTP06333 6.54  LDD1843 
Signal peptidase complex catalytic subunit SEC11A (SEC11A) LDTP05066 5.86  LDD1843 
Signal peptide peptidase-like 2A (SPPL2A) LDTP09395 6.11  LDD1843 
Sphingosine-1-phosphate lyase 1 (SGPL1) LDTP01613 6.06  LDD1843 
Squalene monooxygenase (SQLE) LDTP06142 6.02  LDD1843 
Synaptic vesicle membrane protein VAT-1 homolog (VAT1) LDTP10887 9.85  LDD1843 
Tripeptidyl-peptidase 1 (TPP1) LDTP00428 6.36  LDD1843 
Vesicle transport protein GOT1B (GOLT1B) LDTP13986 6.11  LDD1843 
Vitamin K epoxide reductase complex subunit 1-like protein 1 (VKORC1L1) LDTP08728 8.57  LDD1843 
Vitamin K-dependent gamma-carboxylase (GGCX) LDTP03854 5.86  LDD1843 
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⏷ Show the Full List of 89 Enzyme
69 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Adenosine 3'-phospho 5'-phosphosulfate transporter 1 (SLC35B2) LDTP09328 12.91  LDD1843 
ADP/ATP translocase 3 (SLC25A6) LDTP02609 6.63  LDD1843 
ATP synthase F(0) complex subunit B1, mitochondrial (ATP5PB) LDTP03284 7.06  LDD1843 
ATP synthase subunit g, mitochondrial (ATP5MG) LDTP14511 15.67  LDD1843 
BRI3-binding protein (BRI3BP) LDTP15648 11.24  LDD1843 
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (COX4I1) LDTP02645 5.94  LDD1843 
Cytoskeleton-associated protein 4 (CKAP4) LDTP05511 6.54  LDD1843 
Derlin-1 (DERL1) LDTP11245 6.50  LDD1843 
ER lumen protein-retaining receptor 1 (KDELR1) LDTP03277 16.00  LDD1843 
Growth hormone-inducible transmembrane protein (GHITM) LDTP11869 5.98  LDD1843 
Importin subunit alpha-1 (KPNA2) LDTP04501 9.78  LDD1843 
Importin-4 (IPO4) LDTP09515 5.90  LDD1843 
Lipid scramblase CLPTM1L (CLPTM1L) LDTP10499 5.82  LDD1843 
Lysosome membrane protein 2 (SCARB2) LDTP06034 17.39  LDD1843 
Lysosome-associated membrane glycoprotein 2 (LAMP2) LDTP02655 5.94  LDD1843 
Magnesium transporter NIPA3 (NIPAL1) LDTP17362 13.18  LDD1843 
Melanoma inhibitory activity protein 2 (MIA2) LDTP10669 7.57  LDD1843 
Membrane-associated progesterone receptor component 2 (PGRMC2) LDTP00562 6.92  LDD1843 
Metaxin-1 (MTX1) LDTP05900 17.88  LDD1843 
Mitochondrial dicarboxylate carrier (SLC25A10) LDTP13174 17.03  LDD1843 
Mitochondrial import inner membrane translocase subunit Tim10 (TIMM10) LDTP04956 9.85  LDD1843 
Mitochondrial import inner membrane translocase subunit TIM16 (PAM16) LDTP13983 7.06  LDD1843 
Mitochondrial import inner membrane translocase subunit Tim17-A (TIMM17A) LDTP10913 36.00  LDD1843 
Mitochondrial import inner membrane translocase subunit Tim17-B (TIMM17B) LDTP01059 22.32  LDD1843 
Mitochondrial import inner membrane translocase subunit Tim23 (TIMM23) LDTP00477 8.22  LDD1843 
Mitochondrial inner membrane protein OXA1L (OXA1L) LDTP06308 6.11  LDD1843 
Mitochondrial proton/calcium exchanger protein (LETM1) LDTP01525 9.71  LDD1843 
Mitochondrial S-adenosylmethionine carrier protein (SLC25A26) LDTP07885 8.40  LDD1843 
Mpv17-like protein 2 (MPV17L2) LDTP14952 5.86  LDD1843 
NPC intracellular cholesterol transporter 1 (NPC1) LDTP00541 9.65  LDD1843 
Nuclear pore complex protein Nup155 (NUP155) LDTP01295 6.45  LDD1843 
Nucleoporin NDC1 (NDC1) LDTP11213 9.85  LDD1843 
Prosaposin (PSAP) LDTP02215 11.79  LDD1843 
Protein FAM8A1 (FAM8A1) LDTP16190 8.06  LDD1843 
Protein GPR107 (GPR107) LDTP07236 11.63  LDD1843 
Protein GPR108 (GPR108) LDTP12383 14.32  LDD1843 
Protein tweety homolog 3 (TTYH3) LDTP11615 15.14  LDD1843 
Putative divalent cation/proton antiporter TMEM165 (TMEM165) LDTP12207 5.66  LDD1843 
Putative lipid scramblase CLPTM1 (CLPTM1) LDTP01745 8.06  LDD1843 
Scavenger receptor class B member 1 (SCARB1) LDTP09547 14.42  LDD1843 
Secretory carrier-associated membrane protein 2 (SCAMP2) LDTP00547 17.51  LDD1843 
Sigma intracellular receptor 2 (TMEM97) LDTP06945 12.73  LDD1843 
Sigma non-opioid intracellular receptor 1 (SIGMAR1) LDTP10958 11.24  LDD1843 
Signal recognition particle subunit SRP68 (SRP68) LDTP13262 8.22  LDD1843 
Solute carrier family 25 member 32 (SLC25A32) LDTP11813 16.68  LDD1843 
Solute carrier family 35 member F2 (SLC35F2) LDTP17641 5.86  LDD1843 
StAR-related lipid transfer protein 3 (STARD3) LDTP06221 6.87  LDD1843 
STARD3 N-terminal-like protein (STARD3NL) LDTP01671 21.71  LDD1843 
Stomatin (STOM) LDTP03380 7.26  LDD1843 
Surfeit locus protein 4 (SURF4) LDTP00592 6.06  LDD1843 
Syntaxin-5 (STX5) LDTP05780 5.82  LDD1843 
Tetraspanin-3 (TSPAN3) LDTP16813 23.43  LDD1843 
Translocating chain-associated membrane protein 1 (TRAM1) LDTP06426 13.93  LDD1843 
Translocon-associated protein subunit alpha (SSR1) LDTP04033 15.03  LDD1843 
Transmembrane 9 superfamily member 3 (TM9SF3) LDTP18448 10.70  LDD1843 
Transmembrane emp24 domain-containing protein 2 (TMED2) LDTP06365 9.13  LDD1843 
Transmembrane emp24 domain-containing protein 7 (TMED7) LDTP13969 6.82  LDD1843 
Transmembrane protein 126A (TMEM126A) LDTP15948 10.56  LDD1843 
Transmembrane protein 160 (TMEM160) LDTP20002 12.73  LDD1843 
Transmembrane protein 199 (TMEM199) LDTP08881 14.03  LDD1843 
Transmembrane protein 201 (TMEM201) LDTP07058 5.98  LDD1843 
Transmembrane protein 230 (TMEM230) LDTP10065 7.94  LDD1843 
Transportin-1 (TNPO1) LDTP09949 8.75  LDD1843 
Vacuole membrane protein 1 (VMP1) LDTP10343 5.58  LDD1843 
Vang-like protein 1 (VANGL1) LDTP09288 14.42  LDD1843 
Vesicle transport through interaction with t-SNAREs homolog 1B (VTI1B) LDTP13201 7.57  LDD1843 
Voltage-dependent anion-selective channel protein 1 (VDAC1) LDTP03132 25.81  LDD1843 
Voltage-dependent anion-selective channel protein 2 (VDAC2) LDTP04071 28.64  LDD1843 
Voltage-dependent anion-selective channel protein 3 (VDAC3) LDTP13824 7.73  LDD1843 
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⏷ Show the Full List of 69 Transporter and channel
1 Immunoglobulin Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Leukocyte surface antigen CD47 (CD47) LDTP05572 5.74  LDD1843 
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50 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Angiomotin (AMOT) LDTP06868 5.82  LDD1843 
Ankyrin repeat and LEM domain-containing protein 2 (ANKLE2) LDTP08364 13.64  LDD1843 
Apolipoprotein L2 (APOL2) LDTP11076 25.11  LDD1843 
Brain-specific angiogenesis inhibitor 1-associated protein 2 (BAIAP2) LDTP13755 10.78  LDD1843 
CYFIP-related Rac1 interactor B (CYRIB) LDTP12642 9.71  LDD1843 
Cytochrome c oxidase assembly factor 3 homolog, mitochondrial (COA3) LDTP13902 9.19  LDD1843 
DDB1- and CUL4-associated factor 7 (DCAF7) LDTP04947 5.78  LDD1843 
Disco-interacting protein 2 homolog B (DIP2B) LDTP16173 5.86  LDD1843 
DNA repair protein XRCC1 (XRCC1) LDTP02973 10.06  LDD1843 
Endoplasmic reticulum-Golgi intermediate compartment protein 2 (ERGIC2) LDTP10775 5.82  LDD1843 
Endoplasmic reticulum-Golgi intermediate compartment protein 3 (ERGIC3) LDTP13828 33.36  LDD1843 
Eukaryotic translation initiation factor 3 subunit L (EIF3L) LDTP13813 6.19  LDD1843 
Eukaryotic translation initiation factor 5 (EIF5) LDTP04652 6.73  LDD1843 
FUN14 domain-containing protein 2 (FUNDC2) LDTP11326 5.70  LDD1843 
Ganglioside GM2 activator (GM2A) LDTP02927 6.23  LDD1843 
Golgi integral membrane protein 4 (GOLIM4) LDTP00281 11.24  LDD1843 
HAUS augmin-like complex subunit 5 (HAUS5) LDTP01466 5.86  LDD1843 
HEAT repeat-containing protein 3 (HEATR3) LDTP15253 6.19  LDD1843 
Large proline-rich protein BAG6 (BAG6) LDTP04094 12.82  LDD1843 
LYR motif-containing protein 2 (LYRM2) LDTP18467 6.19  LDD1843 
Mitochondrial fission process protein 1 (MTFP1) LDTP16192 8.46  LDD1843 
Mitochondrial import receptor subunit TOM20 homolog (TOMM20) LDTP06373 6.15  LDD1843 
Mitochondrial import receptor subunit TOM22 homolog (TOMM22) LDTP12565 19.97  LDD1843 
Mitochondrial import receptor subunit TOM5 homolog (TOMM5) LDTP15420 14.32  LDD1843 
Negative elongation factor C/D (NELFCD) LDTP08594 8.17  LDD1843 
Nucleobindin-1 (NUCB1) LDTP05375 12.21  LDD1843 
Nucleobindin-2 (NUCB2) LDTP05160 17.63  LDD1843 
Optic atrophy 3 protein (OPA3) LDTP16006 5.98  LDD1843 
Peroxiredoxin-like 2A (PRXL2A) LDTP11140 13.36  LDD1843 
Poly(U)-binding-splicing factor PUF60 (PUF60) LDTP13311 11.96  LDD1843 
Proteasome activator complex subunit 4 (PSME4) LDTP06250 11.16  LDD1843 
Protein FAM114A2 (FAM114A2) LDTP16080 10.27  LDD1843 
Protein FAM162A (FAM162A) LDTP10056 5.86  LDD1843 
Protein LYRIC (MTDH) LDTP08224 6.63  LDD1843 
Protein unc-119 homolog A (UNC119) LDTP05868 10.70  LDD1843 
Protein unc-119 homolog B (UNC119B) LDTP00105 23.75  LDD1843 
Rab9 effector protein with kelch motifs (RABEPK) LDTP08130 6.32  LDD1843 
RAD50-interacting protein 1 (RINT1) LDTP07476 7.26  LDD1843 
Reticulon-3 (RTN3) LDTP01522 28.64  LDD1843 
Reticulon-4 (RTN4) LDTP12412 11.31  LDD1843 
Signal recognition particle receptor subunit beta (SRPRB) LDTP16323 15.45  LDD1843 
Sororin (CDCA5) LDTP10304 6.54  LDD1843 
Synaptogyrin-2 (SYNGR2) LDTP00859 9.13  LDD1843 
Syntaxin-18 (STX18) LDTP13086 15.45  LDD1843 
Tetraspanin-6 (TSPAN6) LDTP14458 17.63  LDD1843 
Thioredoxin-related transmembrane protein 4 (TMX4) LDTP18373 16.34  LDD1843 
TraB domain-containing protein (TRABD) LDTP19963 7.84  LDD1843 
Transmembrane protein 209 (TMEM209) LDTP18272 7.36  LDD1843 
U3 small nucleolar RNA-associated protein 6 homolog (UTP6) LDTP12830 6.11  LDD1843 
Ubiquinol-cytochrome c reductase complex assembly factor 6 (UQCC6) LDTP15067 10.93  LDD1843 
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⏷ Show the Full List of 50 Other

Full Information of The Labelling Profiles of This Probe

Quantification: AfBPP Probe vs Negative Probe
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
Probe:50uM; negative probe:50uM
Quantitative Method
TMT
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Note
Negative probe:C#CCCC1(CCC(NC)=O)N=N1
Interaction Atlas ID
 LDD1843 
Download The Altas

References

1 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587