General Information of Target

Target ID LDTP05572
Target Name Leukocyte surface antigen CD47 (CD47)
Gene Name CD47
Gene ID 961
Synonyms
MER6; Leukocyte surface antigen CD47; Antigenic surface determinant protein OA3; Integrin-associated protein; IAP; Protein MER6; CD antigen CD47
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF
KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT
REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL
VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA
ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ
PPRKAVEEPLNAFKESKGMMNDE
Target Type
Clinical trial
Target Bioclass
Immunoglobulin
Subcellular location
Cell membrane
Function
Adhesive protein that mediates cell-to-cell interactions. Acts as a receptor for thrombospondin THBS1 and as modulator of integrin signaling through the activation of heterotrimeric G proteins. Involved in signal transduction, cardiovascular homeostasis, inflammation, apoptosis, angiogenesis, cellular self-renewal, and immunoregulation. Plays a role in modulating pulmonary endothelin EDN1 signaling. Modulates nitrous oxide (NO) signaling, in response to THBS1, hence playing a role as a pressor agent, supporting blood pressure. Plays an important role in memory formation and synaptic plasticity in the hippocampus. Receptor for SIRPA, binding to which prevents maturation of immature dendritic cells and inhibits cytokine production by mature dendritic cells. Interaction with SIRPG mediates cell-cell adhesion, enhances superantigen-dependent T-cell-mediated proliferation and costimulates T-cell activation. Positively modulates FAS-dependent apoptosis in T-cells, perhaps by enhancing FAS clustering. Plays a role in suppressing angiogenesis and may be involved in metabolic dysregulation during normal aging. In response to THBS1, negatively modulates wound healing. Inhibits stem cell self-renewal, in response to THBS1, probably by regulation of the stem cell transcription factors POU5F1/OCT4, SOX2, MYC/c-Myc and KLF4. May play a role in membrane transport and/or integrin dependent signal transduction. May prevent premature elimination of red blood cells.
TTD ID
T97766
Uniprot ID
Q08722
DrugMap ID
TT28S46
Ensemble ID
ENST00000355354.13
HGNC ID
HGNC:1682
ChEMBL ID
CHEMBL3714583

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
HT115 SNV: p.E118Ter .
IGROV1 SNV: p.K102N .
Ishikawa (Heraklio) 02 ER SNV: p.A252T .
NCIH1793 Insertion: p.L275FfsTer29 .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 3 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
CHEMBL5175495
 Probe Info 
11.99  LDD0196  [1]
OPA-S-S-alkyne
 Probe Info 
K130(3.14)  LDD3494  [2]
HPAP
 Probe Info 
3.09  LDD0064  [3]
PAL-AfBPP Probe
Click To Hide/Show 44 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C022
 Probe Info 
7.21  LDD1728  [4]
C040
 Probe Info 
7.16  LDD1740  [4]
C056
 Probe Info 
29.04  LDD1753  [4]
C091
 Probe Info 
14.22  LDD1782  [4]
C092
 Probe Info 
21.11  LDD1783  [4]
C106
 Probe Info 
24.59  LDD1793  [4]
C134
 Probe Info 
30.27  LDD1816  [4]
C159
 Probe Info 
8.94  LDD1839  [4]
C161
 Probe Info 
12.82  LDD1841  [4]
C163
 Probe Info 
5.74  LDD1843  [4]
C170
 Probe Info 
8.94  LDD1850  [4]
C178
 Probe Info 
19.70  LDD1857  [4]
C186
 Probe Info 
7.94  LDD1864  [4]
C201
 Probe Info 
31.34  LDD1877  [4]
C218
 Probe Info 
15.35  LDD1892  [4]
C219
 Probe Info 
7.26  LDD1893  [4]
C220
 Probe Info 
26.54  LDD1894  [4]
C223
 Probe Info 
5.24  LDD1897  [4]
C225
 Probe Info 
5.35  LDD1898  [4]
C228
 Probe Info 
24.59  LDD1901  [4]
C231
 Probe Info 
24.42  LDD1904  [4]
C233
 Probe Info 
10.78  LDD1906  [4]
C235
 Probe Info 
24.25  LDD1908  [4]
C246
 Probe Info 
16.34  LDD1919  [4]
C264
 Probe Info 
17.03  LDD1935  [4]
C277
 Probe Info 
9.51  LDD1947  [4]
C282
 Probe Info 
17.15  LDD1952  [4]
C285
 Probe Info 
20.25  LDD1955  [4]
C289
 Probe Info 
30.48  LDD1959  [4]
C293
 Probe Info 
24.42  LDD1963  [4]
C296
 Probe Info 
11.96  LDD1966  [4]
C310
 Probe Info 
16.56  LDD1977  [4]
C343
 Probe Info 
13.55  LDD2005  [4]
C348
 Probe Info 
11.08  LDD2009  [4]
C349
 Probe Info 
20.68  LDD2010  [4]
C350
 Probe Info 
52.35  LDD2011  [4]
C362
 Probe Info 
83.29  LDD2023  [4]
C364
 Probe Info 
30.70  LDD2025  [4]
C366
 Probe Info 
8.94  LDD2027  [4]
C367
 Probe Info 
6.92  LDD2028  [4]
C388
 Probe Info 
56.49  LDD2047  [4]
C390
 Probe Info 
31.78  LDD2049  [4]
C431
 Probe Info 
13.74  LDD2086  [4]
VE-P
 Probe Info 
N.A.  LDD0396  [5]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0014  Panhematin hPBMC 3.09  LDD0064  [3]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Transporter and channel
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Amyloid-beta precursor protein (APP) APP family P05067
Immunoglobulin
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Poliovirus receptor (PVR) Nectin family P15151
Signal-regulatory protein gamma (SIRPG) . Q9P1W8
Other
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Translation initiation factor IF-3, mitochondrial (MTIF3) IF-3 family Q9H2K0
Protein kish-B (TMEM167B) KISH family Q9NRX6
Nesprin-4 (SYNE4) Nesprin family Q8N205

The Drug(s) Related To This Target

Phase 3
Click To Hide/Show 1 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Hu5f9-g4 . D09JYL
Phase 2
Click To Hide/Show 3 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Ao-176 Antibody DA4W1I
Alx148 Protein D0J7UL
Dsp-107 Recombinant protein D1WB6Z
Phase 1
Click To Hide/Show 9 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Cc-90002 Antibody DI8WC4
Ibi188 Antibody D5V2HR
Imc-002 Antibody DTHR46
Tg-1801 Antibody D8UNG2
Tjc4 Antibody DEUC70
Zl-1201 Antibody DY7D9A
Sl-172154 Recombinant protein DKUF26
Tti-621 Recombinant protein D01CUO
Tti-622 Recombinant protein D5FCP1

References

1 Charting the Chemical Space of Acrylamide-Based Inhibitors of zDHHC20. ACS Med Chem Lett. 2022 Sep 26;13(10):1648-1654. doi: 10.1021/acsmedchemlett.2c00336. eCollection 2022 Oct 13.
2 A chemical proteomics approach for global mapping of functional lysines on cell surface of living cell. Nat Commun. 2024 Apr 8;15(1):2997. doi: 10.1038/s41467-024-47033-w.
Mass spectrometry data entry: PXD042888
3 A Chemical Proteomic Map of Heme-Protein Interactions. J Am Chem Soc. 2022 Aug 24;144(33):15013-15019. doi: 10.1021/jacs.2c06104. Epub 2022 Aug 12.
Mass spectrometry data entry: PXD034651
4 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
5 Pharmacological Targeting of Vacuolar H(+)-ATPase via Subunit V1G Combats Multidrug-Resistant Cancer. Cell Chem Biol. 2020 Nov 19;27(11):1359-1370.e8. doi: 10.1016/j.chembiol.2020.06.011. Epub 2020 Jul 9.