General Information of Target

Target ID LDTP11245
Target Name Derlin-1 (DERL1)
Gene Name DERL1
Gene ID 79139
Synonyms
DER1; Derlin-1; Degradation in endoplasmic reticulum protein 1; DERtrin-1; Der1-like protein 1
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEK
CRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLE
HVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS
NSIQKLHLAENAEPEEQSAA
Target Bioclass
Transporter and channel
Family
Derlin family
Subcellular location
Endoplasmic reticulum membrane
Function
Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. Forms homotetramers which encircle a large channel traversing the endoplasmic reticulum (ER) membrane. This allows the retrotranslocation of misfolded proteins from the ER into the cytosol where they are ubiquitinated and degraded by the proteasome. The channel has a lateral gate within the membrane which provides direct access to membrane proteins with no need to reenter the ER lumen first. May mediate the interaction between VCP and the misfolded protein. Also involved in endoplasmic reticulum stress-induced pre-emptive quality control, a mechanism that selectively attenuates the translocation of newly synthesized proteins into the endoplasmic reticulum and reroutes them to the cytosol for proteasomal degradation. By controlling the steady-state expression of the IGF1R receptor, indirectly regulates the insulin-like growth factor receptor signaling pathway.; (Microbial infection) In case of infection by cytomegaloviruses, it plays a central role in the export from the ER and subsequent degradation of MHC class I heavy chains via its interaction with US11 viral protein, which recognizes and associates with MHC class I heavy chains. Also participates in the degradation process of misfolded cytomegalovirus US2 protein.
Uniprot ID
Q9BUN8
Ensemble ID
ENST00000259512.9
HGNC ID
HGNC:28454

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
U937 SNV: p.I4V .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 6 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
m-APA
 Probe Info 
14.00  LDD0402  [1]
CHEMBL5175495
 Probe Info 
6.35  LDD0196  [2]
TH211
 Probe Info 
Y207(20.00)  LDD0260  [3]
C-Sul
 Probe Info 
2.69  LDD0066  [4]
Acrolein
 Probe Info 
N.A.  LDD0223  [5]
Crotonaldehyde
 Probe Info 
N.A.  LDD0219  [5]
PAL-AfBPP Probe
Click To Hide/Show 95 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C017
 Probe Info 
7.06  LDD1725  [6]
C022
 Probe Info 
12.47  LDD1728  [6]
C040
 Probe Info 
24.76  LDD1740  [6]
C041
 Probe Info 
8.63  LDD1741  [6]
C053
 Probe Info 
5.66  LDD1751  [6]
C055
 Probe Info 
39.40  LDD1752  [6]
C056
 Probe Info 
49.52  LDD1753  [6]
C063
 Probe Info 
20.11  LDD1760  [6]
C070
 Probe Info 
12.21  LDD1766  [6]
C072
 Probe Info 
11.08  LDD1768  [6]
C082
 Probe Info 
6.96  LDD1774  [6]
C087
 Probe Info 
8.00  LDD1779  [6]
C095
 Probe Info 
4.96  LDD1786  [6]
C100
 Probe Info 
4.96  LDD1789  [6]
C106
 Probe Info 
27.86  LDD1793  [6]
C107
 Probe Info 
10.13  LDD1794  [6]
C108
 Probe Info 
10.27  LDD1795  [6]
C112
 Probe Info 
43.71  LDD1799  [6]
C130
 Probe Info 
7.06  LDD1812  [6]
C134
 Probe Info 
37.27  LDD1816  [6]
C143
 Probe Info 
16.56  LDD1825  [6]
C153
 Probe Info 
17.75  LDD1834  [6]
C159
 Probe Info 
10.70  LDD1839  [6]
C160
 Probe Info 
13.83  LDD1840  [6]
C161
 Probe Info 
23.75  LDD1841  [6]
C163
 Probe Info 
6.50  LDD1843  [6]
C166
 Probe Info 
7.01  LDD1846  [6]
C169
 Probe Info 
32.67  LDD1849  [6]
C186
 Probe Info 
10.63  LDD1864  [6]
C194
 Probe Info 
10.06  LDD1870  [6]
C196
 Probe Info 
19.29  LDD1872  [6]
C198
 Probe Info 
13.27  LDD1874  [6]
C218
 Probe Info 
11.31  LDD1892  [6]
C219
 Probe Info 
5.74  LDD1893  [6]
C220
 Probe Info 
19.29  LDD1894  [6]
C225
 Probe Info 
7.01  LDD1898  [6]
C226
 Probe Info 
6.92  LDD1899  [6]
C228
 Probe Info 
43.71  LDD1901  [6]
C231
 Probe Info 
45.25  LDD1904  [6]
C232
 Probe Info 
47.50  LDD1905  [6]
C233
 Probe Info 
12.73  LDD1906  [6]
C235
 Probe Info 
27.10  LDD1908  [6]
C238
 Probe Info 
18.38  LDD1911  [6]
C240
 Probe Info 
10.06  LDD1913  [6]
C243
 Probe Info 
13.93  LDD1916  [6]
C246
 Probe Info 
27.28  LDD1919  [6]
C252
 Probe Info 
10.78  LDD1925  [6]
C264
 Probe Info 
27.10  LDD1935  [6]
C265
 Probe Info 
13.09  LDD1936  [6]
C273
 Probe Info 
5.74  LDD1943  [6]
C277
 Probe Info 
13.09  LDD1947  [6]
C278
 Probe Info 
66.26  LDD1948  [6]
C282
 Probe Info 
31.34  LDD1952  [6]
C285
 Probe Info 
56.49  LDD1955  [6]
C287
 Probe Info 
38.85  LDD1957  [6]
C288
 Probe Info 
11.63  LDD1958  [6]
C289
 Probe Info 
99.73  LDD1959  [6]
C290
 Probe Info 
5.28  LDD1960  [6]
C293
 Probe Info 
29.04  LDD1963  [6]
C296
 Probe Info 
22.32  LDD1966  [6]
C299
 Probe Info 
13.55  LDD1968  [6]
C305
 Probe Info 
10.63  LDD1974  [6]
C310
 Probe Info 
9.99  LDD1977  [6]
C314
 Probe Info 
15.24  LDD1981  [6]
C322
 Probe Info 
11.24  LDD1988  [6]
C326
 Probe Info 
7.78  LDD1990  [6]
C339
 Probe Info 
9.71  LDD2002  [6]
C343
 Probe Info 
22.01  LDD2005  [6]
C348
 Probe Info 
28.05  LDD2009  [6]
C349
 Probe Info 
65.34  LDD2010  [6]
C350
 Probe Info 
99.73  LDD2011  [6]
C353
 Probe Info 
12.82  LDD2014  [6]
C354
 Probe Info 
11.79  LDD2015  [6]
C362
 Probe Info 
99.73  LDD2023  [6]
C363
 Probe Info 
32.45  LDD2024  [6]
C364
 Probe Info 
35.75  LDD2025  [6]
C366
 Probe Info 
18.00  LDD2027  [6]
C367
 Probe Info 
8.22  LDD2028  [6]
C373
 Probe Info 
4.92  LDD2033  [6]
C388
 Probe Info 
42.22  LDD2047  [6]
C390
 Probe Info 
21.71  LDD2049  [6]
C407
 Probe Info 
11.71  LDD2064  [6]
C413
 Probe Info 
12.04  LDD2069  [6]
C426
 Probe Info 
14.03  LDD2081  [6]
C429
 Probe Info 
12.82  LDD2084  [6]
C431
 Probe Info 
18.64  LDD2086  [6]
FFF probe11
 Probe Info 
20.00  LDD0471  [7]
FFF probe13
 Probe Info 
20.00  LDD0475  [7]
FFF probe14
 Probe Info 
17.66  LDD0477  [7]
FFF probe15
 Probe Info 
20.00  LDD0478  [7]
FFF probe2
 Probe Info 
20.00  LDD0463  [7]
FFF probe3
 Probe Info 
17.85  LDD0464  [7]
JN0003
 Probe Info 
20.00  LDD0469  [7]
A-DA
 Probe Info 
2.43  LDD0145  [8]
OEA-DA
 Probe Info 
12.50  LDD0046  [9]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0109  NEM HeLa N.A.  LDD0223  [5]
 LDCM0084  Ro 48-8071 A-549 2.43  LDD0145  [8]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 7 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Cystic fibrosis transmembrane conductance regulator (CFTR) ABCC family P13569
Glutamate decarboxylase 2 (GAD2) Group II decarboxylase family Q05329
Minor histocompatibility antigen H13 (HM13) Peptidase A22B family Q8TCT9
(Lyso)-N-acylphosphatidylethanolamine lipase (ABHD4) Peptidase S33 family Q8TB40
E3 ubiquitin-protein ligase TRIM32 (TRIM32) TRIM/RBCC family Q13049
Ubiquitin-conjugating enzyme E2 J1 (UBE2J1) Ubiquitin-conjugating enzyme family Q9Y385
E3 ubiquitin-protein ligase LNX (LNX1) . Q8TBB1
Transporter and channel
Click To Hide/Show 9 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Solute carrier family 7 member 14 (SLC7A14) Cationic amino acid transporter (CAT) (TC 2.A.3.3) family Q8TBB6
Large neutral amino acids transporter small subunit 2 (SLC7A8) L-type amino acid transporter (LAT) (TC 2.A.3.8) family Q9UHI5
B-cell receptor-associated protein 31 (BCAP31) BCAP29/BCAP31 family P51572
Hepatic sodium/bile acid cotransporter (SLC10A1) Bile acid:sodium symporter (BASS) family Q14973
Sodium-dependent organic anion transporter (SLC10A6) Bile acid:sodium symporter (BASS) family Q3KNW5
Proton-coupled zinc antiporter SLC30A8 (SLC30A8) Cation diffusion facilitator (CDF) transporter (TC 2.A.4) family Q8IWU4
Aquaporin-6 (AQP6) MIP/aquaporin (TC 1.A.8) family Q13520
Sodium channel regulatory subunit beta-3 (SCN3B) Sodium channel auxiliary subunit SCN3B family Q9NY72
Thioredoxin-related transmembrane protein 2 (TMX2) . Q9Y320
Transcription factor
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Ribosome quality control complex subunit TCF25 (TCF25) TCF25 family Q9BQ70
GPCR
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Free fatty acid receptor 2 (FFAR2) G-protein coupled receptor 1 family O15552
Immunoglobulin
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Fc receptor-like protein 4 (FCRL4) . Q96PJ5
Other
Click To Hide/Show 6 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Receptor expression-enhancing protein 4 (REEP4) DP1 family Q9H6H4
Cytosolic iron-sulfur assembly component 2A (CIAO2A) MIP18 family Q9H5X1
Reticulophagy regulator 3 (RETREG3) RETREG family Q86VR2
Protein KASH5 (KASH5) . Q8N6L0
Protein TMED8 (TMED8) . Q6PL24
Testis-expressed protein 44 (TEX44) . Q53QW1

References

1 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
2 Charting the Chemical Space of Acrylamide-Based Inhibitors of zDHHC20. ACS Med Chem Lett. 2022 Sep 26;13(10):1648-1654. doi: 10.1021/acsmedchemlett.2c00336. eCollection 2022 Oct 13.
3 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
4 Low-Toxicity Sulfonium-Based Probes for Cysteine-Specific Profiling in Live Cells. Anal Chem. 2022 Mar 15;94(10):4366-4372. doi: 10.1021/acs.analchem.1c05129. Epub 2022 Mar 4.
5 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
6 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
7 Ligand and Target Discovery by Fragment-Based Screening in Human Cells. Cell. 2017 Jan 26;168(3):527-541.e29. doi: 10.1016/j.cell.2016.12.029. Epub 2017 Jan 19.
8 A Global Map of Lipid-Binding Proteins and Their Ligandability in Cells. Cell. 2015 Jun 18;161(7):1668-80. doi: 10.1016/j.cell.2015.05.045.
9 Mapping Protein Targets of Bioactive Small Molecules Using Lipid-Based Chemical Proteomics. ACS Chem Biol. 2017 Oct 20;12(10):2671-2681. doi: 10.1021/acschembio.7b00581. Epub 2017 Sep 20.
Mass spectrometry data entry: PXD007570