Details of the Probe

General Information of Probe

Probe ID
LDPC0292
Probe Name
C026
Synonyms
Z4282859772
Probe Type
PAL-AfBPP Probe
Structure
3D MOL 2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 315.34
Lipid-water partition coefficient (xlogp) 2.5
Rotatable Bond Count (rotbonds) 6
Hydrogen Bond Donor Count (hbonddonor) 1
Hydrogen Bond Acceptor Count (hbondacc) 5
Chemical Identifiers
Formula
C17H18FN3O2
IUPAC Name
3-(3-but-3-ynyldiazirin-3-yl)-N-(7-fluoro-2-methyl-2,3-dihydro-1-benzofuran-3-yl)propanamide
Canonical SMILES
CC1C(C2=C(O1)C(=CC=C2)F)NC(=O)CCC3(N=N3)CCC#C
InChI
InChI=1S/C17H18FN3O2/c1-3-4-9-17(20-21-17)10-8-14(22)19-15-11(2)23-16-12(15)6-5-7-13(16)18/h1,5-7,11,15H,4,8-10H2,2H3,(H,19,22)
InChIKey
FGPMMUQAJOXSAP-UHFFFAOYSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

42 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Acid ceramidase (ASAH1) LDTP05905 5.54  LDD1732 
Antigen peptide transporter 1 (TAP1) LDTP05408 5.70  LDD1732 
Beta-galactosidase (GLB1) LDTP02837 20.97  LDD1732 
Bis(monoacylglycero)phosphate synthase CLN5 (CLN5) LDTP01241 5.90  LDD1732 
CAAX prenyl protease 1 homolog (ZMPSTE24) LDTP01328 6.77  LDD1732 
Carnitine O-palmitoyltransferase 2, mitochondrial (CPT2) LDTP03257 28.44  LDD1732 
CCR4-NOT transcription complex subunit 4 (CNOT4) LDTP01640 5.35  LDD1732 
Cytochrome b-c1 complex subunit 8 (UQCRQ) LDTP00486 5.70  LDD1732 
Cytochrome b-c1 complex subunit 9 (UQCR10) LDTP13189 14.12  LDD1732 
Cytochrome b5 type B (CYB5B) LDTP00697 9.78  LDD1732 
dCTP pyrophosphatase 1 (DCTPP1) LDTP12013 6.11  LDD1732 
Delta(24)-sterol reductase (DHCR24) LDTP06375 8.00  LDD1732 
Endoplasmic reticulum transmembrane helix translocase (ATP13A1) LDTP12279 6.59  LDD1732 
Endothelin-converting enzyme 1 (ECE1) LDTP04008 6.28  LDD1732 
FAD-dependent oxidoreductase domain-containing protein 1 (FOXRED1) LDTP10188 5.13  LDD1732 
Heme oxygenase 1 (HMOX1) LDTP02359 16.34  LDD1732 
Heme oxygenase 2 (HMOX2) LDTP03540 7.67  LDD1732 
Histone-lysine N-methyltransferase 2A (KMT2A) LDTP05396 8.11  LDD1732 
Inactive C-alpha-formylglycine-generating enzyme 2 (SUMF2) LDTP09056 8.46  LDD1732 
Lipid droplet-associated hydrolase (LDAH) LDTP16007 6.11  LDD1732 
Lysine-specific histone demethylase 2 (KDM1B) LDTP09043 7.11  LDD1732 
Lysophosphatidic acid phosphatase type 6 (ACP6) LDTP12363 5.78  LDD1732 
Lysosomal acid phosphatase (ACP2) LDTP02539 6.15  LDD1732 
Lysosomal alpha-glucosidase (GAA) LDTP02486 5.94  LDD1732 
Lysosomal Pro-X carboxypeptidase (PRCP) LDTP04004 15.78  LDD1732 
Lysosomal protective protein (CTSA) LDTP02505 5.10  LDD1732 
Methylsterol monooxygenase 1 (MSMO1) LDTP06477 11.47  LDD1732 
Mitochondrial cardiolipin hydrolase (PLD6) LDTP08790 5.31  LDD1732 
NADH dehydrogenase 1 beta subcomplex subunit 3 (NDUFB3) LDTP00832 11.71  LDD1732 
Nicotinamide phosphoribosyltransferase (NAMPT) LDTP04051 11.96  LDD1732 
Palmitoyl-protein thioesterase 1 (PPT1) LDTP04388 15.45  LDD1732 
Peptidyl-prolyl cis-trans isomerase FKBP7 (FKBP7) LDTP14218 6.50  LDD1732 
Phospholipase A2 group XV (PLA2G15) LDTP09088 6.92  LDD1732 
Prenylcysteine oxidase 1 (PCYOX1) LDTP13282 8.17  LDD1732 
Probable serine carboxypeptidase CPVL (CPVL) LDTP15988 10.85  LDD1732 
Protein O-GlcNAcase (OGA) LDTP00988 8.88  LDD1732 
Putative phospholipase B-like 2 (PLBD2) LDTP09256 7.06  LDD1732 
Retinoid-inducible serine carboxypeptidase (SCPEP1) LDTP16032 10.41  LDD1732 
S-methyl-5'-thioadenosine phosphorylase (MTAP) LDTP05758 7.46  LDD1732 
Saccharopine dehydrogenase-like oxidoreductase (SCCPDH) LDTP15484 14.22  LDD1732 
V-type proton ATPase 116 kDa subunit a 2 (ATP6V0A2) LDTP14030 7.62  LDD1732 
Vitamin K epoxide reductase complex subunit 1-like protein 1 (VKORC1L1) LDTP08728 13.09  LDD1732 
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⏷ Show the Full List of 42 Enzyme
38 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Adenosine 3'-phospho 5'-phosphosulfate transporter 1 (SLC35B2) LDTP09328 5.98  LDD1732 
ATP synthase subunit g, mitochondrial (ATP5MG) LDTP14511 12.55  LDD1732 
BRI3-binding protein (BRI3BP) LDTP15648 5.62  LDD1732 
Cytochrome c oxidase subunit 7A2, mitochondrial (COX7A2) LDTP02724 20.53  LDD1732 
ER lumen protein-retaining receptor 1 (KDELR1) LDTP03277 37.53  LDD1732 
Gasdermin-E (GSDME) LDTP00970 10.78  LDD1732 
Integral membrane protein 2C (ITM2C) LDTP12451 5.82  LDD1732 
Lysosome membrane protein 2 (SCARB2) LDTP06034 17.75  LDD1732 
Major facilitator superfamily domain-containing protein 3 (MFSD3) LDTP18153 7.26  LDD1732 
Membrane-associated progesterone receptor component 2 (PGRMC2) LDTP00562 7.11  LDD1732 
Metal transporter CNNM3 (CNNM3) LDTP09144 5.06  LDD1732 
Metaxin-1 (MTX1) LDTP05900 8.94  LDD1732 
Mitochondrial dicarboxylate carrier (SLC25A10) LDTP13174 8.82  LDD1732 
Mitochondrial import inner membrane translocase subunit Tim17-A (TIMM17A) LDTP10913 32.67  LDD1732 
Mitochondrial import inner membrane translocase subunit Tim17-B (TIMM17B) LDTP01059 73.52  LDD1732 
Mitochondrial inner membrane protein OXA1L (OXA1L) LDTP06308 9.45  LDD1732 
Mpv17-like protein 2 (MPV17L2) LDTP14952 28.05  LDD1732 
Nucleoporin NDC1 (NDC1) LDTP11213 6.15  LDD1732 
Peroxisomal membrane protein 2 (PXMP2) LDTP16069 8.06  LDD1732 
Prosaposin (PSAP) LDTP02215 7.52  LDD1732 
Protein GPR107 (GPR107) LDTP07236 7.73  LDD1732 
Protein tweety homolog 3 (TTYH3) LDTP11615 18.90  LDD1732 
Proton-coupled zinc antiporter SLC30A5 (SLC30A5) LDTP09294 5.90  LDD1732 
Scavenger receptor class B member 1 (SCARB1) LDTP09547 10.20  LDD1732 
Sigma intracellular receptor 2 (TMEM97) LDTP06945 12.55  LDD1732 
Solute carrier family 25 member 32 (SLC25A32) LDTP11813 9.58  LDD1732 
Solute carrier family 35 member F2 (SLC35F2) LDTP17641 5.50  LDD1732 
StAR-related lipid transfer protein 3 (STARD3) LDTP06221 7.31  LDD1732 
Tetraspanin-3 (TSPAN3) LDTP16813 15.35  LDD1732 
Translocon-associated protein subunit alpha (SSR1) LDTP04033 22.94  LDD1732 
Transmembrane 9 superfamily member 3 (TM9SF3) LDTP18448 6.36  LDD1732 
Transmembrane emp24 domain-containing protein 2 (TMED2) LDTP06365 13.00  LDD1732 
Transmembrane emp24 domain-containing protein 7 (TMED7) LDTP13969 12.82  LDD1732 
Transmembrane protein 104 (TMEM104) LDTP17797 7.84  LDD1732 
Transmembrane protein 126A (TMEM126A) LDTP15948 8.28  LDD1732 
Transmembrane protein 199 (TMEM199) LDTP08881 9.32  LDD1732 
Voltage-dependent anion-selective channel protein 1 (VDAC1) LDTP03132 25.99  LDD1732 
Voltage-dependent anion-selective channel protein 2 (VDAC2) LDTP04071 17.15  LDD1732 
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⏷ Show the Full List of 38 Transporter and channel
37 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Ankyrin repeat and LEM domain-containing protein 2 (ANKLE2) LDTP08364 5.70  LDD1732 
Apolipoprotein L2 (APOL2) LDTP11076 28.05  LDD1732 
Brain-specific angiogenesis inhibitor 1-associated protein 2 (BAIAP2) LDTP13755 6.73  LDD1732 
Centromere protein K (CENPK) LDTP11143 42.52  LDD1732 
Centrosomal protein 43 (CEP43) LDTP01652 5.46  LDD1732 
Clustered mitochondria protein homolog (CLUH) LDTP14486 13.74  LDD1732 
Cytochrome c oxidase assembly factor 3 homolog, mitochondrial (COA3) LDTP13902 9.99  LDD1732 
DNA replication complex GINS protein PSF2 (GINS2) LDTP13802 7.89  LDD1732 
Endoplasmic reticulum-Golgi intermediate compartment protein 3 (ERGIC3) LDTP13828 6.68  LDD1732 
ER lumen protein-retaining receptor 2 (KDELR2) LDTP03678 20.82  LDD1732 
ER lumen protein-retaining receptor 3 (KDELR3) LDTP00850 11.39  LDD1732 
Ergosterol biosynthetic protein 28 homolog (ERG28) LDTP13478 5.62  LDD1732 
General transcription factor IIE subunit 1 (GTF2E1) LDTP03465 5.43  LDD1732 
Golgi integral membrane protein 4 (GOLIM4) LDTP00281 13.00  LDD1732 
HCLS1-associated protein X-1 (HAX1) LDTP00199 9.78  LDD1732 
HEAT repeat-containing protein 3 (HEATR3) LDTP15253 6.19  LDD1732 
Keratinocyte-associated transmembrane protein 2 (KCT2) LDTP19780 6.41  LDD1732 
Large proline-rich protein BAG6 (BAG6) LDTP04094 8.00  LDD1732 
Mitochondrial fission process protein 1 (MTFP1) LDTP16192 7.67  LDD1732 
Mitochondrial import receptor subunit TOM22 homolog (TOMM22) LDTP12565 16.68  LDD1732 
Mitochondrial import receptor subunit TOM5 homolog (TOMM5) LDTP15420 10.41  LDD1732 
Negative elongation factor C/D (NELFCD) LDTP08594 7.11  LDD1732 
Nucleobindin-2 (NUCB2) LDTP05160 13.74  LDD1732 
Poly(U)-binding-splicing factor PUF60 (PUF60) LDTP13311 10.93  LDD1732 
Protein CEBPZOS (CEBPZOS) LDTP18883 8.82  LDD1732 
Protein FAM162A (FAM162A) LDTP10056 6.73  LDD1732 
Protein LYRIC (MTDH) LDTP08224 6.28  LDD1732 
Protein unc-119 homolog A (UNC119) LDTP05868 13.45  LDD1732 
Protein unc-119 homolog B (UNC119B) LDTP00105 22.94  LDD1732 
Reticulon-3 (RTN3) LDTP01522 6.59  LDD1732 
Reticulon-4 (RTN4) LDTP12412 5.70  LDD1732 
Synaptic vesicle glycoprotein 2A (SV2A) LDTP07934 5.74  LDD1732 
Synaptogyrin-2 (SYNGR2) LDTP00859 5.13  LDD1732 
Tetraspanin-6 (TSPAN6) LDTP14458 8.82  LDD1732 
Tetratricopeptide repeat protein 38 (TTC38) LDTP19372 10.78  LDD1732 
Thioredoxin-related transmembrane protein 4 (TMX4) LDTP18373 6.06  LDD1732 
Ubiquinol-cytochrome c reductase complex assembly factor 6 (UQCC6) LDTP15067 25.46  LDD1732 
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⏷ Show the Full List of 37 Other

Full Information of The Labelling Profiles of This Probe

Quantification: AfBPP Probe vs Negative Probe
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
Probe:50uM; negative probe:50uM
Quantitative Method
TMT
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Note
Negative probe:C#CCCC1(CCC(NC)=O)N=N1
Interaction Atlas ID
 LDD1732 
Download The Altas

References

1 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587