General Information of Probe

Probe ID
LDPC0203
Probe Name
Alkylaryl probe 2
Synonyms
SCHEMBL21084296
Probe Type
ABPP Probe
Structure
3D MOL 2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 203.24
Lipid-water partition coefficient (xlogp) 1
Rotatable Bond Count (rotbonds) 4
Hydrogen Bond Donor Count (hbonddonor) 3
Hydrogen Bond Acceptor Count (hbondacc) 3
Chemical Identifiers
Formula
C11H13N3O
IUPAC Name
N-but-3-ynyl-4-hydrazinylbenzamide
Canonical SMILES
C#CCCNC(=O)C1=CC=C(C=C1)NN
InChI
InChI=1S/C11H13N3O/c1-2-3-8-13-11(15)9-4-6-10(14-12)7-5-9/h1,4-7,14H,3,8,12H2,(H,13,15)
InChIKey
YMXFNYQGDWBRIR-UHFFFAOYSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

107 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
3-ketoacyl-CoA thiolase, peroxisomal (ACAA1) LDTP02329 6.00  LDD0391 
5'-3' exonuclease PLD3 (PLD3) LDTP08476 5.00  LDD0389 
5'-nucleotidase domain-containing protein 2 (NT5DC2) LDTP18414 16.00  LDD0389 
Acid ceramidase (ASAH1) LDTP05905 20.00  LDD0391 
Acyl-CoA (8-3)-desaturase (FADS1) LDTP00968 20.00  LDD0389 
Acyl-CoA 6-desaturase (FADS2) LDTP01699 20.00  LDD0389 
Acyl-coenzyme A thioesterase 9, mitochondrial (ACOT9) LDTP16274 3.00  LDD0392 
Aldehyde dehydrogenase X, mitochondrial (ALDH1B1) LDTP03560 11.00  LDD0389 
Aldehyde dehydrogenase, mitochondrial (ALDH2) LDTP02074 11.00  LDD0389 
Alpha-ketoglutarate-dependent dioxygenase FTO (FTO) LDTP11595 13.00  LDD0389 
Alpha-N-acetylgalactosaminidase (NAGA) LDTP02883 17.00  LDD0391 
Aspartate aminotransferase, cytoplasmic (GOT1) LDTP02888 3.00  LDD0390 
Beta-galactosidase (GLB1) LDTP02837 6.00  LDD0391 
Beta-glucuronidase (GUSB) LDTP02260 3.00  LDD0392 
Beta-hexosaminidase subunit beta (HEXB) LDTP02216 11.00  LDD0391 
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (JMJD6) LDTP07492 3.00  LDD0390 
Branched-chain-amino-acid aminotransferase, cytosolic (BCAT1) LDTP04622 20.00  LDD0391 
Branched-chain-amino-acid aminotransferase, mitochondrial (BCAT2) LDTP00624 15.00  LDD0391 
BRCA1-associated protein (BRAP) LDTP08084 11.00  LDD0390 
Carboxymethylenebutenolidase homolog (CMBL) LDTP10215 18.00  LDD0389 
Carboxypeptidase D (CPD) LDTP01372 20.00  LDD0391 
Catalase (CAT) LDTP02001 20.00  LDD0391 
Cathepsin B (CTSB) LDTP02223 14.00  LDD0391 
Cathepsin D (CTSD) LDTP02198 16.00  LDD0391 
Cathepsin S (CTSS) LDTP03329 18.00  LDD0391 
Cathepsin Z (CTSZ) LDTP13147 19.00  LDD0391 
Cytochrome b5 type B (CYB5B) LDTP00697 3.00  LDD0392 
Cytosol aminopeptidase (LAP3) LDTP03455 5.00  LDD0391 
DBH-like monooxygenase protein 1 (MOXD1) LDTP07662 3.00  LDD0390 
Deoxyhypusine hydroxylase (DOHH) LDTP11225 3.00  LDD0392 
Dipeptidyl peptidase 1 (CTSC) LDTP04572 3.00  LDD0390 
Dipeptidyl peptidase 3 (DPP3) LDTP12803 5.00  LDD0389 
DNA oxidative demethylase ALKBH2 (ALKBH2) LDTP07457 20.00  LDD0390 
Elongator complex protein 3 (ELP3) LDTP12110 3.00  LDD0390 
Endoplasmic reticulum aminopeptidase 1 (ERAP1) LDTP12868 8.00  LDD0391 
Endothelin-converting enzyme 1 (ECE1) LDTP04008 4.00  LDD0392 
FAST kinase domain-containing protein 5, mitochondrial (FASTKD5) LDTP07979 10.00  LDD0389 
Ferritin heavy chain (FTH1) LDTP01974 20.00  LDD0391 
Ferrochelatase, mitochondrial (FECH) LDTP03198 4.00  LDD0390 
Fructose-bisphosphate aldolase A (ALDOA) LDTP02008 12.00  LDD0389 
Fructose-bisphosphate aldolase C (ALDOC) LDTP02386 14.00  LDD0389 
Glutaredoxin-3 (GLRX3) LDTP01374 3.00  LDD0392 
Glycerol-3-phosphate phosphatase (PGP) LDTP00089 3.00  LDD0390 
Haloacid dehalogenase-like hydrolase domain-containing 5 (HDHD5) LDTP18330 4.00  LDD0392 
Heme oxygenase 2 (HMOX2) LDTP03540 20.00  LDD0389 
Histone lysine demethylase PHF8 (PHF8) LDTP13703 20.00  LDD0389 
Lactoylglutathione lyase (GLO1) LDTP05434 5.00  LDD0391 
Lanosterol 14-alpha demethylase (CYP51A1) LDTP06648 14.00  LDD0389 
Legumain (LGMN) LDTP10888 3.00  LDD0390 
Lysine-specific demethylase 5C (KDM5C) LDTP03939 19.00  LDD0389 
Lysine-specific demethylase 5D (KDM5D) LDTP11440 3.00  LDD0390 
Lysine-specific histone demethylase 1A (KDM1A) LDTP00957 20.00  LDD0389 
Lysine-specific histone demethylase 2 (KDM1B) LDTP09043 17.00  LDD0389 
Lysosomal acid glucosylceramidase (GBA1) LDTP02005 20.00  LDD0391 
Lysosomal acid lipase/cholesteryl ester hydrolase (LIPA) LDTP03858 17.00  LDD0391 
Lysosomal alpha-glucosidase (GAA) LDTP02486 20.00  LDD0391 
Lysosomal alpha-mannosidase (MAN2B1) LDTP00338 20.00  LDD0391 
Lysosomal Pro-X carboxypeptidase (PRCP) LDTP04004 15.00  LDD0391 
Lysosomal protective protein (CTSA) LDTP02505 9.00  LDD0391 
Matrix metalloproteinase-14 (MMP14) LDTP04352 10.00  LDD0391 
Methanethiol oxidase (SELENBP1) LDTP05793 3.00  LDD0390 
Minor histocompatibility antigen H13 (HM13) LDTP09396 3.00  LDD0392 
Mitochondrial intermediate peptidase (MIPEP) LDTP10981 3.00  LDD0392 
Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 (PLOD3) LDTP01005 20.00  LDD0389 
N-acetyl-D-glucosamine kinase (NAGK) LDTP13372 20.00  LDD0391 
N-acetylglucosamine-6-sulfatase (GNS) LDTP02799 7.00  LDD0391 
Neurolysin, mitochondrial (NLN) LDTP11494 11.00  LDD0392 
Nucleic acid dioxygenase ALKBH1 (ALKBH1) LDTP05967 20.00  LDD0389 
Palmitoyl-protein thioesterase 1 (PPT1) LDTP04388 20.00  LDD0391 
Peroxidasin homolog (PXDN) LDTP09829 20.00  LDD0391 
Peroxisomal acyl-coenzyme A oxidase 1 (ACOX1) LDTP06307 19.00  LDD0389 
Peroxisomal acyl-coenzyme A oxidase 3 (ACOX3) LDTP00589 20.00  LDD0391 
Phytanoyl-CoA dioxygenase domain-containing protein 1 (PHYHD1) LDTP07065 3.00  LDD0390 
Pirin (PIR) LDTP00325 4.00  LDD0390 
Probable arginine--tRNA ligase, mitochondrial (RARS2) LDTP07092 3.00  LDD0390 
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 (PLOD1) LDTP05373 3.00  LDD0390 
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 (PLOD2) LDTP00285 3.00  LDD0390 
Prolyl 3-hydroxylase 1 (P3H1) LDTP06750 8.00  LDD0391 
Prolyl 4-hydroxylase subunit alpha-1 (P4HA1) LDTP02679 3.00  LDD0390 
Prolyl 4-hydroxylase subunit alpha-2 (P4HA2) LDTP00645 3.00  LDD0390 
Prostaglandin reductase 2 (PTGR2) LDTP08979 15.00  LDD0391 
Putative phospholipase B-like 2 (PLBD2) LDTP09256 9.00  LDD0391 
Putative transferase CAF17, mitochondrial (IBA57) LDTP07110 9.00  LDD0389 
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 (PYROXD2) LDTP15408 20.00  LDD0391 
Ras-related protein Rab-11B (RAB11B) LDTP06501 4.00  LDD0392 
Ras-related protein Rab-13 (RAB13) LDTP04401 3.00  LDD0390 
Ras-related protein Rab-14 (RAB14) LDTP04901 5.00  LDD0391 
Ras-related protein Rab-5B (RAB5B) LDTP04893 3.00  LDD0392 
Ras-related protein Rab-5C (RAB5C) LDTP04398 3.00  LDD0392 
Retinaldehyde dehydrogenase 3 (ALDH1A3) LDTP04134 4.00  LDD0392 
Retinoid-inducible serine carboxypeptidase (SCPEP1) LDTP16032 3.00  LDD0390 
Ribonucleoside-diphosphate reductase subunit M2 (RRM2) LDTP03592 13.00  LDD0389 
Ribonucleoside-diphosphate reductase subunit M2 B (RRM2B) LDTP07989 7.00  LDD0391 
Ribosomal oxygenase 2 (RIOX2) LDTP08451 8.00  LDD0389 
S-adenosylmethionine decarboxylase proenzyme (AMD1) LDTP02918 20.00  LDD0389 
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (ATP2A2) LDTP02860 3.00  LDD0390 
Secernin-2 (SCRN2) LDTP15725 20.00  LDD0389 
Secernin-3 (SCRN3) LDTP17022 15.00  LDD0389 
Sialidase-1 (NEU1) LDTP10884 5.00  LDD0391 
Sodium/potassium-transporting ATPase subunit alpha-1 (ATP1A1) LDTP02067 3.00  LDD0390 
Sphingolipid delta(4)-desaturase DES1 (DEGS1) LDTP00544 5.00  LDD0390 
Stearoyl-CoA desaturase (SCD) LDTP00344 20.00  LDD0389 
Sterol 26-hydroxylase, mitochondrial (CYP27A1) LDTP05348 20.00  LDD0391 
Thioredoxin-related transmembrane protein 1 (TMX1) LDTP11874 3.00  LDD0390 
Tripeptidyl-peptidase 1 (TPP1) LDTP00428 18.00  LDD0391 
Very long-chain specific acyl-CoA dehydrogenase, mitochondrial (ACADVL) LDTP04289 5.00  LDD0391 
Xaa-Pro aminopeptidase 3 (XPNPEP3) LDTP12420 20.00  LDD0389 
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⏷ Show the Full List of 107 Enzyme
8 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Amino acid transporter heavy chain SLC3A2 (SLC3A2) LDTP02256 3.00  LDD0390 
Cytochrome c (CYCS) LDTP05231 7.00  LDD0389 
Cytoskeleton-associated protein 4 (CKAP4) LDTP05511 4.00  LDD0392 
NPC intracellular cholesterol transporter 2 (NPC2) LDTP04940 4.00  LDD0392 
Prosaposin (PSAP) LDTP02215 5.00  LDD0391 
Syntenin-1 (SDCBP) LDTP00310 3.00  LDD0392 
Transferrin receptor protein 1 (TFRC) LDTP01969 3.00  LDD0390 
Voltage-dependent anion-selective channel protein 2 (VDAC2) LDTP04071 3.00  LDD0390 
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⏷ Show the Full List of 8 Transporter and channel
1 Transcription factor Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
SWI/SNF complex subunit SMARCC1 (SMARCC1) LDTP09932 5.00  LDD0389 
------------------------------------------------------------------------------------
1 Immunoglobulin Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
HLA class I histocompatibility antigen, B alpha chain (HLA-B) LDTP01913 3.00  LDD0392 
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18 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Amyloid beta precursor like protein 2 (APLP2) LDTP05491 20.00  LDD0391 
Centromere/kinetochore protein zw10 homolog (ZW10) LDTP00720 7.00  LDD0391 
Density-regulated protein (DENR) LDTP00808 20.00  LDD0391 
Eukaryotic translation initiation factor 3 subunit K (EIF3K) LDTP13143 11.00  LDD0392 
Ferritin light chain (FTL) LDTP01973 7.00  LDD0391 
Galectin-3-binding protein (LGALS3BP) LDTP05558 7.00  LDD0391 
Golgin subfamily B member 1 (GOLGB1) LDTP06210 11.00  LDD0392 
Kelch-like ECH-associated protein 1 (KEAP1) LDTP06051 12.00  LDD0391 
Mammalian ependymin-related protein 1 (EPDR1) LDTP13606 20.00  LDD0391 
Plasminogen activator inhibitor 1 (SERPINE1) LDTP02085 20.00  LDD0391 
Protein canopy homolog 3 (CNPY3) LDTP11176 5.00  LDD0392 
Protein PRRC2C (PRRC2C) LDTP14085 5.00  LDD0389 
Receptor expression-enhancing protein 5 (REEP5) LDTP05257 3.00  LDD0392 
Reticulon-4 (RTN4) LDTP12412 11.00  LDD0390 
Small ribosomal subunit protein mS35 (MRPS35) LDTP14788 20.00  LDD0392 
Spectrin beta chain, non-erythrocytic 2 (SPTBN2) LDTP00510 3.00  LDD0390 
Tetratricopeptide repeat protein 38 (TTC38) LDTP19372 14.00  LDD0389 
Zinc finger protein 318 (ZNF318) LDTP07223 3.00  LDD0390 
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⏷ Show the Full List of 18 Other

Competitor(s) Related To This Probe

Competitor ID Name Concentration Cell-system Ref
 LDCM0099  Phenelzine 10 mM Human normal cells (HEK-293T) [1]

Full Information of The Labelling Profiles of This Probe

Quantification: Probe vs DMSO
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Interaction Atlas ID
  
Experiment 2 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Breast
Disease Model
Breast adenocarcinoma [ICD-11:2C60]
Model Name
Human breast adenocarcinoma cells (MDA-MB-231)
Interaction Atlas ID
Quantification: Probe vs (Probe+Competitor)
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
Competitor Name
Phenelzine
Competitor Concentration
10 mM
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Interaction Atlas ID
  
Experiment 2 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
Competitor Name
Phenelzine
Competitor Concentration
10 mM
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Breast
Disease Model
Breast adenocarcinoma [ICD-11:2C60]
Model Name
Human breast adenocarcinoma cells (MDA-MB-231)
Interaction Atlas ID

References

1 Hydrazines as versatile chemical biology probes and drug-discovery tools for cofactor-dependent enzymes. bioRxiv, 2020-06.