General Information of Target

Target ID LDTP09829
Target Name Peroxidasin homolog (PXDN)
Gene Name PXDN
Gene ID 7837
Synonyms
KIAA0230; MG50; PRG2; PXD01; VPO; VPO1; Peroxidasin homolog; EC 1.11.2.-; Melanoma-associated antigen MG50; Peroxidasin 1; hsPxd01; Vascular peroxidase 1; p53-responsive gene 2 protein) [Cleaved into: PXDN active fragment]
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MGKEQELLEAARTGHLPAVEKLLSGKRLSSGFGGGGGGGSGGGGGGSGGGGGGLGSSSHP
LSSLLSMWRGPNVNCVDSTGYTPLHHAALNGHKDVVEVLLRNDALTNVADSKGCYPLHLA
AWKGDAQIVRLLIHQGPSHTRVNEQNNDNETALHCAAQYGHTEVVKVLLEELTDPTMRNN
KFETPLDLAALYGRLEVVKMLLNAHPNLLSCNTKKHTPLHLAARNGHKAVVQVLLDAGMD
SNYQTEMGSALHEAALFGKTDVVQILLAAGTDVNIKDNHGLTALDTVRELPSQKSQQIAA
LIEDHMTGKRSTKEVDKTPPPQPPLISSMDSISQKSQGDVEKAVTELIIDFDANAEEEGP
YEALYNAISCHSLDSMASGRSSDQDSTNKEAEAAGVKPAGVRPRERPPPPAKPPPDEEEE
DHIDKKYFPLTASEVLSMRPRIHGSAAREEDEHPYELLLTAETKKVVLVDGKTKDHRRSS
SSRSQDSAEGQDGQVPEQFSGLLHGSSPVCEVGQDPFQLLCTAGQSHPDGSPQQGACHKA
SMQLEETGVHAPGASQPSALDQSKRVGYLTGLPTTNSRSHPETLTHTASPHPGGAEEGDR
SGARSRAPPTSKPKAELKLSRSLSKSDSDLLTCSPTEDATMGSRSESLSNCSIGKKRLEK
SPSFASEWDEIEKIMSSIGEGIDFSQERQKISGLRTLEQSVGEWLESIGLQQYESKLLLN
GFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKVKALGYDGNSPPSVPSWLD
SLGLQDYVHSFLSSGYSSIDTVKNLWELELVNVLKVQLLGHRKRIIASLADRPYEEPPQK
PPRFSQLRCQDLLSQTSSPLSQNDSCTGRSADLLLPPGDTGRRRHDSLHDPAAPSRAERF
RIQEEHREAKLTLRPPSLAAPYAPVQSWQHQPEKLIFESCGYEANYLGSMLIKDLRGTES
TQDACAKMRKSTEHMKKIPTIILSITYKGVKFIDASNKNVIAEHEIRNISCAAQDPEDLC
TFAYITKDLQTSHHYCHVFSTVDVNLTYEIILTLGQAFEVAYQLALQAQKSRATGASAAE
MIETKSSKPVPKPRVGVRKSALEPPDMDQDAQSHASVSWVVDPKPDSKRSLSTN
Target Bioclass
Enzyme
Family
Peroxidase family, XPO subfamily
Subcellular location
Secreted, extracellular space, extracellular matrix
Function
Catalyzes the two-electron oxidation of bromide by hydrogen peroxide and generates hypobromite as a reactive intermediate which mediates the formation of sulfilimine cross-links between methionine and hydroxylysine residues within an uncross-linked collagen IV/COL4A1 NC1 hexamer. In turns, directly contributes to the collagen IV network-dependent fibronectin/FN and laminin assembly, which is required for full extracellular matrix (ECM)-mediated signaling. Thus, sulfilimine cross-links are essential for growth factor-induced cell proliferation and survival in endothelial cells, an event essential to basement membrane integrity. In addition, through the bromide oxidation, may promote tubulogenesis and induce angiogenesis through ERK1/2, Akt, and FAK pathways. Moreover brominates alpha2 collagen IV chain/COL4A2 at 'Tyr-1485' and leads to bromine enrichment of the basement membranes. In vitro, can also catalyze the two-electron oxidation of thiocyanate and iodide and these two substrates could effectively compete with bromide and thus inhibit the formation of sulfilimine bonds. Binds laminins. May play a role in the organization of eyeball structure and lens development during eye development.
Uniprot ID
Q92626
Ensemble ID
ENST00000252804.9
HGNC ID
HGNC:14966

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
A2780 SNV: p.M1044K .
AN3CA SNV: p.T809K .
BT549 SNV: p.T376A .
CAMA1 SNV: p.Q1264Ter .
COLO792 SNV: p.P795S .
DU145 Deletion: p.N865MfsTer25
SNV: p.L1080V
.
EFO27 SNV: p.R840H .
HCC15 SNV: p.R1272S .
HL60 SNV: p.R39L; p.C42F .
HLF SNV: p.K1200R .
HUCCT1 Substitution: p.D911N .
IPC298 SNV: p.E501K .
KASUMI1 SNV: p.K274N .
KASUMI2 SNV: p.R880H .
KMCH1 SNV: p.A835S .
KYSE410 SNV: p.C1301R .
LS123 SNV: p.L93F .
MCC13 Substitution: p.T761I .
MDST8 SNV: p.Q1027Ter .
MELJUSO SNV: p.R281Q; p.S484L .
MOLT4 Deletion: p.N865MfsTer25
SNV: p.G569V
.
NCIH1793 SNV: p.R1129L .
NCIH2172 SNV: p.Q1264H .
NCIH2286 SNV: p.G405V; p.R880S .
NUGC3 SNV: p.E1041G .
PATU8988T SNV: p.M1392T .
RD SNV: p.S871N DBIA    Probe Info 
SNU1196 SNV: p.V808I .
SUPT1 SNV: p.R977H .
SW1783 SNV: p.R727W .
SW756 SNV: p.Q30L .
T24 SNV: p.D1432H .
TOV21G SNV: p.E994Ter; p.G1123W .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 8 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
Alkylaryl probe 2
 Probe Info 
20.00  LDD0391  [1]
IPM
 Probe Info 
N.A.  LDD0241  [2]
DBIA
 Probe Info 
C243(2.01)  LDD3314  [3]
IA-alkyne
 Probe Info 
C243(0.00); C1234(0.00)  LDD0165  [4]
TFBX
 Probe Info 
N.A.  LDD0148  [5]
Acrolein
 Probe Info 
N.A.  LDD0217  [6]
Methacrolein
 Probe Info 
C1301(0.00); C1415(0.00)  LDD0218  [6]
NAIA_5
 Probe Info 
C1234(0.00); C1415(0.00); C243(0.00)  LDD2223  [7]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0215  AC10 HEK-293T C732(1.18)  LDD1508  [8]
 LDCM0237  AC12 HEK-293T C243(1.09); C732(1.27)  LDD1510  [8]
 LDCM0259  AC14 HEK-293T C243(0.86)  LDD1512  [8]
 LDCM0270  AC15 HEK-293T C243(1.17)  LDD1513  [8]
 LDCM0277  AC18 HEK-293T C732(1.08)  LDD1516  [8]
 LDCM0279  AC2 HEK-293T C732(1.09)  LDD1518  [8]
 LDCM0280  AC20 HEK-293T C243(0.93); C732(1.05)  LDD1519  [8]
 LDCM0281  AC21 HEK-293T C748(1.05)  LDD1520  [8]
 LDCM0282  AC22 HEK-293T C243(0.89)  LDD1521  [8]
 LDCM0283  AC23 HEK-293T C243(0.94)  LDD1522  [8]
 LDCM0284  AC24 HEK-293T C243(1.01)  LDD1523  [8]
 LDCM0286  AC26 HEK-293T C732(1.23)  LDD1525  [8]
 LDCM0288  AC28 HEK-293T C243(0.98); C732(1.21)  LDD1527  [8]
 LDCM0289  AC29 HEK-293T C748(1.30)  LDD1528  [8]
 LDCM0291  AC30 HEK-293T C243(1.28)  LDD1530  [8]
 LDCM0292  AC31 HEK-293T C243(0.74)  LDD1531  [8]
 LDCM0293  AC32 HEK-293T C243(1.03)  LDD1532  [8]
 LDCM0295  AC34 HEK-293T C732(1.03)  LDD1534  [8]
 LDCM0297  AC36 HEK-293T C243(0.98); C732(1.26)  LDD1536  [8]
 LDCM0298  AC37 HEK-293T C748(1.04)  LDD1537  [8]
 LDCM0299  AC38 HEK-293T C243(0.98)  LDD1538  [8]
 LDCM0300  AC39 HEK-293T C243(0.92)  LDD1539  [8]
 LDCM0301  AC4 HEK-293T C243(1.12); C732(1.04)  LDD1540  [8]
 LDCM0302  AC40 HEK-293T C243(1.00)  LDD1541  [8]
 LDCM0304  AC42 HEK-293T C732(1.10)  LDD1543  [8]
 LDCM0306  AC44 HEK-293T C243(1.07); C732(1.24)  LDD1545  [8]
 LDCM0307  AC45 HEK-293T C748(0.90)  LDD1546  [8]
 LDCM0308  AC46 HEK-293T C243(1.06)  LDD1547  [8]
 LDCM0309  AC47 HEK-293T C243(0.74)  LDD1548  [8]
 LDCM0310  AC48 HEK-293T C243(0.95)  LDD1549  [8]
 LDCM0312  AC5 HEK-293T C748(1.20)  LDD1551  [8]
 LDCM0313  AC50 HEK-293T C732(1.16)  LDD1552  [8]
 LDCM0315  AC52 HEK-293T C243(0.97); C732(1.12)  LDD1554  [8]
 LDCM0316  AC53 HEK-293T C748(0.92)  LDD1555  [8]
 LDCM0317  AC54 HEK-293T C243(0.89)  LDD1556  [8]
 LDCM0318  AC55 HEK-293T C243(0.82)  LDD1557  [8]
 LDCM0319  AC56 HEK-293T C243(0.94)  LDD1558  [8]
 LDCM0321  AC58 HEK-293T C732(1.16)  LDD1560  [8]
 LDCM0323  AC6 HEK-293T C243(1.08)  LDD1562  [8]
 LDCM0324  AC60 HEK-293T C243(0.98); C732(1.31)  LDD1563  [8]
 LDCM0325  AC61 HEK-293T C748(1.38)  LDD1564  [8]
 LDCM0326  AC62 HEK-293T C243(0.87)  LDD1565  [8]
 LDCM0327  AC63 HEK-293T C243(0.88)  LDD1566  [8]
 LDCM0328  AC64 HEK-293T C243(0.85)  LDD1567  [8]
 LDCM0334  AC7 HEK-293T C243(0.80)  LDD1568  [8]
 LDCM0345  AC8 HEK-293T C243(0.93)  LDD1569  [8]
 LDCM0248  AKOS034007472 HEK-293T C748(0.97)  LDD1511  [8]
 LDCM0275  AKOS034007705 HEK-293T C243(1.09)  LDD1514  [8]
 LDCM0108  Chloroacetamide HeLa C1415(0.00); C243(0.00)  LDD0222  [6]
 LDCM0367  CL1 HEK-293T C736(1.25)  LDD1571  [8]
 LDCM0368  CL10 HEK-293T C243(1.17)  LDD1572  [8]
 LDCM0369  CL100 HEK-293T C243(1.32)  LDD1573  [8]
 LDCM0370  CL101 HEK-293T C736(0.95)  LDD1574  [8]
 LDCM0372  CL103 HEK-293T C243(0.92); C736(1.09)  LDD1576  [8]
 LDCM0373  CL104 HEK-293T C243(0.92)  LDD1577  [8]
 LDCM0374  CL105 HEK-293T C736(1.26)  LDD1578  [8]
 LDCM0376  CL107 HEK-293T C243(1.06); C736(1.14)  LDD1580  [8]
 LDCM0377  CL108 HEK-293T C243(1.23)  LDD1581  [8]
 LDCM0378  CL109 HEK-293T C736(0.92)  LDD1582  [8]
 LDCM0379  CL11 HEK-293T C243(0.85)  LDD1583  [8]
 LDCM0381  CL111 HEK-293T C243(0.97); C736(1.03)  LDD1585  [8]
 LDCM0382  CL112 HEK-293T C243(1.09)  LDD1586  [8]
 LDCM0383  CL113 HEK-293T C736(1.26)  LDD1587  [8]
 LDCM0385  CL115 HEK-293T C243(1.15); C736(1.16)  LDD1589  [8]
 LDCM0386  CL116 HEK-293T C243(0.88)  LDD1590  [8]
 LDCM0387  CL117 HEK-293T C736(1.02)  LDD1591  [8]
 LDCM0389  CL119 HEK-293T C243(1.09); C736(1.13)  LDD1593  [8]
 LDCM0390  CL12 HEK-293T C243(1.31)  LDD1594  [8]
 LDCM0391  CL120 HEK-293T C243(1.01)  LDD1595  [8]
 LDCM0392  CL121 HEK-293T C736(1.26)  LDD1596  [8]
 LDCM0394  CL123 HEK-293T C243(0.90); C736(1.12)  LDD1598  [8]
 LDCM0395  CL124 HEK-293T C243(1.34)  LDD1599  [8]
 LDCM0396  CL125 HEK-293T C736(1.11)  LDD1600  [8]
 LDCM0398  CL127 HEK-293T C243(1.08); C736(1.03)  LDD1602  [8]
 LDCM0399  CL128 HEK-293T C243(1.05)  LDD1603  [8]
 LDCM0400  CL13 HEK-293T C736(2.31)  LDD1604  [8]
 LDCM0402  CL15 HEK-293T C243(1.08); C736(1.19)  LDD1606  [8]
 LDCM0403  CL16 HEK-293T C243(0.90)  LDD1607  [8]
 LDCM0405  CL18 HEK-293T C732(1.13)  LDD1609  [8]
 LDCM0408  CL20 HEK-293T C243(1.03); C732(1.20)  LDD1612  [8]
 LDCM0409  CL21 HEK-293T C748(1.02)  LDD1613  [8]
 LDCM0410  CL22 HEK-293T C243(0.94)  LDD1614  [8]
 LDCM0411  CL23 HEK-293T C243(0.84)  LDD1615  [8]
 LDCM0412  CL24 HEK-293T C243(1.09)  LDD1616  [8]
 LDCM0413  CL25 HEK-293T C736(1.17)  LDD1617  [8]
 LDCM0415  CL27 HEK-293T C243(0.90); C736(1.25)  LDD1619  [8]
 LDCM0416  CL28 HEK-293T C243(1.30)  LDD1620  [8]
 LDCM0418  CL3 HEK-293T C243(1.06); C736(1.09)  LDD1622  [8]
 LDCM0419  CL30 HEK-293T C732(0.93)  LDD1623  [8]
 LDCM0421  CL32 HEK-293T C243(1.17); C732(1.32)  LDD1625  [8]
 LDCM0422  CL33 HEK-293T C748(1.84)  LDD1626  [8]
 LDCM0423  CL34 HEK-293T C243(0.84)  LDD1627  [8]
 LDCM0424  CL35 HEK-293T C243(0.89)  LDD1628  [8]
 LDCM0425  CL36 HEK-293T C243(0.91)  LDD1629  [8]
 LDCM0426  CL37 HEK-293T C736(1.19)  LDD1630  [8]
 LDCM0428  CL39 HEK-293T C243(1.10); C736(1.09)  LDD1632  [8]
 LDCM0429  CL4 HEK-293T C243(1.08)  LDD1633  [8]
 LDCM0430  CL40 HEK-293T C243(0.89)  LDD1634  [8]
 LDCM0432  CL42 HEK-293T C732(1.11)  LDD1636  [8]
 LDCM0434  CL44 HEK-293T C243(1.06); C732(1.38)  LDD1638  [8]
 LDCM0435  CL45 HEK-293T C748(1.46)  LDD1639  [8]
 LDCM0436  CL46 HEK-293T C243(1.23)  LDD1640  [8]
 LDCM0437  CL47 HEK-293T C243(0.98)  LDD1641  [8]
 LDCM0438  CL48 HEK-293T C243(1.10)  LDD1642  [8]
 LDCM0439  CL49 HEK-293T C736(1.14)  LDD1643  [8]
 LDCM0443  CL52 HEK-293T C243(1.04)  LDD1646  [8]
 LDCM0445  CL54 HEK-293T C732(1.54)  LDD1648  [8]
 LDCM0447  CL56 HEK-293T C243(1.18); C732(1.01)  LDD1650  [8]
 LDCM0448  CL57 HEK-293T C748(1.52)  LDD1651  [8]
 LDCM0449  CL58 HEK-293T C243(1.25)  LDD1652  [8]
 LDCM0450  CL59 HEK-293T C243(0.86)  LDD1653  [8]
 LDCM0451  CL6 HEK-293T C732(1.08)  LDD1654  [8]
 LDCM0452  CL60 HEK-293T C243(1.18)  LDD1655  [8]
 LDCM0453  CL61 HEK-293T C736(1.35)  LDD1656  [8]
 LDCM0455  CL63 HEK-293T C243(1.17); C736(1.06)  LDD1658  [8]
 LDCM0456  CL64 HEK-293T C243(1.00)  LDD1659  [8]
 LDCM0458  CL66 HEK-293T C732(1.33)  LDD1661  [8]
 LDCM0460  CL68 HEK-293T C243(0.99); C732(0.96)  LDD1663  [8]
 LDCM0461  CL69 HEK-293T C748(1.04)  LDD1664  [8]
 LDCM0463  CL70 HEK-293T C243(0.93)  LDD1666  [8]
 LDCM0464  CL71 HEK-293T C243(1.05)  LDD1667  [8]
 LDCM0465  CL72 HEK-293T C243(1.08)  LDD1668  [8]
 LDCM0466  CL73 HEK-293T C736(1.18)  LDD1669  [8]
 LDCM0469  CL76 HEK-293T C243(0.97)  LDD1672  [8]
 LDCM0471  CL78 HEK-293T C732(1.11)  LDD1674  [8]
 LDCM0473  CL8 HEK-293T C243(1.15); C732(1.10)  LDD1676  [8]
 LDCM0474  CL80 HEK-293T C243(1.18); C732(1.47)  LDD1677  [8]
 LDCM0475  CL81 HEK-293T C748(0.88)  LDD1678  [8]
 LDCM0476  CL82 HEK-293T C243(1.13)  LDD1679  [8]
 LDCM0477  CL83 HEK-293T C243(1.05)  LDD1680  [8]
 LDCM0478  CL84 HEK-293T C243(1.04)  LDD1681  [8]
 LDCM0479  CL85 HEK-293T C736(1.15)  LDD1682  [8]
 LDCM0481  CL87 HEK-293T C243(1.14); C736(1.12)  LDD1684  [8]
 LDCM0482  CL88 HEK-293T C243(0.98)  LDD1685  [8]
 LDCM0484  CL9 HEK-293T C748(1.18)  LDD1687  [8]
 LDCM0485  CL90 HEK-293T C732(1.11)  LDD1688  [8]
 LDCM0487  CL92 HEK-293T C243(1.00); C732(0.97)  LDD1690  [8]
 LDCM0488  CL93 HEK-293T C748(1.11)  LDD1691  [8]
 LDCM0489  CL94 HEK-293T C243(1.15)  LDD1692  [8]
 LDCM0490  CL95 HEK-293T C243(1.30)  LDD1693  [8]
 LDCM0491  CL96 HEK-293T C243(0.97)  LDD1694  [8]
 LDCM0492  CL97 HEK-293T C736(1.14)  LDD1695  [8]
 LDCM0494  CL99 HEK-293T C243(0.98); C736(1.06)  LDD1697  [8]
 LDCM0495  E2913 HEK-293T C243(1.00); C736(0.98)  LDD1698  [8]
 LDCM0468  Fragment33 HEK-293T C243(1.08); C736(1.02)  LDD1671  [8]
 LDCM0022  KB02 Caov-3 C748(2.12)  LDD2295  [3]
 LDCM0023  KB03 Caov-3 C748(2.81)  LDD2712  [3]
 LDCM0024  KB05 IGR37 C243(2.01)  LDD3314  [3]
 LDCM0109  NEM HeLa N.A.  LDD0224  [6]
 LDCM0099  Phenelzine MDA-MB-231 5.00  LDD0392  [1]

References

1 Hydrazines as versatile chemical biology probes and drug-discovery tools for cofactor-dependent enzymes. bioRxiv, 2020-06.
2 Oxidant-Induced Bioconjugation for Protein Labeling in Live Cells. ACS Chem Biol. 2023 Jan 20;18(1):112-122. doi: 10.1021/acschembio.2c00740. Epub 2022 Dec 21.
3 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
4 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
5 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
6 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
7 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
8 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402