General Information of Target

Target ID LDTP06501
Target Name Ras-related protein Rab-11B (RAB11B)
Gene Name RAB11B
Gene ID 9230
Synonyms
YPT3; Ras-related protein Rab-11B; EC 3.6.5.2; GTP-binding protein YPT3
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ
IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
Target Bioclass
Enzyme
Family
Small GTPase superfamily, Rab family
Subcellular location
Recycling endosome membrane
Function
The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11B plays a role in endocytic recycling, regulating apical recycling of several transmembrane proteins including cystic fibrosis transmembrane conductance regulator/CFTR, epithelial sodium channel/ENaC, potassium voltage-gated channel, and voltage-dependent L-type calcium channel. May also regulate constitutive and regulated secretion, like insulin granule exocytosis. Required for melanosome transport and release from melanocytes. Also regulates V-ATPase intracellular transport in response to extracellular acidosis. Promotes Rabin8/RAB3IP preciliary vesicular trafficking to mother centriole by forming a ciliary targeting complex containing Rab11, ASAP1, Rabin8/RAB3IP, RAB11FIP3 and ARF4, thereby regulating ciliogenesis initiation (Probable). On the contrary, upon LPAR1 receptor signaling pathway activation, interaction with phosphorylated WDR44 prevents Rab11-RAB3IP-RAB11FIP3 complex formation and cilia growth (Probable).
Uniprot ID
Q15907
Ensemble ID
ENST00000328024.11
HGNC ID
HGNC:9761

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
JURKAT SNV: p.A68T .
LS180 SNV: p.A79V .
MOLT4 SNV: p.L131M .
NCIH716 SNV: p.R33H .
RL952 SNV: p.R82H .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 10 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
FBPP2
 Probe Info 
4.73  LDD0318  [1]
TH211
 Probe Info 
Y91(7.45)  LDD0260  [2]
ONAyne
 Probe Info 
K179(3.12); K58(1.08)  LDD0274  [3]
STPyne
 Probe Info 
K179(9.65)  LDD0277  [3]
AZ-9
 Probe Info 
E39(1.05)  LDD2208  [4]
OPA-S-S-alkyne
 Probe Info 
K179(3.25)  LDD3494  [5]
Alkylaryl probe 2
 Probe Info 
4.00  LDD0392  [6]
Jackson_14
 Probe Info 
2.08  LDD0123  [7]
Acrolein
 Probe Info 
H96(0.00); H112(0.00)  LDD0217  [8]
Crotonaldehyde
 Probe Info 
N.A.  LDD0219  [8]
PAL-AfBPP Probe
Click To Hide/Show 34 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
ILS-1 PP
 Probe Info 
2.85  LDD0417  [9]
C004
 Probe Info 
5.54  LDD1714  [10]
C022
 Probe Info 
9.32  LDD1728  [10]
C040
 Probe Info 
13.55  LDD1740  [10]
C055
 Probe Info 
12.47  LDD1752  [10]
C056
 Probe Info 
25.63  LDD1753  [10]
C063
 Probe Info 
14.03  LDD1760  [10]
C178
 Probe Info 
17.27  LDD1857  [10]
C187
 Probe Info 
15.35  LDD1865  [10]
C210
 Probe Info 
48.17  LDD1884  [10]
C231
 Probe Info 
22.32  LDD1904  [10]
C232
 Probe Info 
47.84  LDD1905  [10]
C235
 Probe Info 
33.13  LDD1908  [10]
C264
 Probe Info 
26.35  LDD1935  [10]
C265
 Probe Info 
15.56  LDD1936  [10]
C270
 Probe Info 
6.50  LDD1940  [10]
C285
 Probe Info 
25.28  LDD1955  [10]
C289
 Probe Info 
44.32  LDD1959  [10]
C293
 Probe Info 
28.64  LDD1963  [10]
C296
 Probe Info 
12.38  LDD1966  [10]
C343
 Probe Info 
14.12  LDD2005  [10]
C388
 Probe Info 
61.82  LDD2047  [10]
C390
 Probe Info 
99.73  LDD2049  [10]
C391
 Probe Info 
16.11  LDD2050  [10]
C392
 Probe Info 
5.74  LDD2051  [10]
C393
 Probe Info 
5.17  LDD2052  [10]
C396
 Probe Info 
5.13  LDD2055  [10]
FFF probe11
 Probe Info 
19.84  LDD0471  [11]
FFF probe13
 Probe Info 
20.00  LDD0475  [11]
FFF probe14
 Probe Info 
19.06  LDD0477  [11]
FFF probe2
 Probe Info 
20.00  LDD0463  [11]
FFF probe3
 Probe Info 
20.00  LDD0464  [11]
DA-2
 Probe Info 
N.A.  LDD0072  [12]
OEA-DA
 Probe Info 
19.75  LDD0046  [13]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0108  Chloroacetamide HeLa H96(0.00); H112(0.00)  LDD0222  [8]
 LDCM0107  IAA HeLa H112(0.00); H96(0.00)  LDD0221  [8]
 LDCM0109  NEM HeLa H112(0.00); H96(0.00)  LDD0223  [8]
 LDCM0099  Phenelzine MDA-MB-231 4.00  LDD0392  [6]
 LDCM0016  Ranjitkar_cp1 MDA-MB-231 2.08  LDD0123  [7]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Proto-oncogene tyrosine-protein kinase Src (SRC) Tyr protein kinase family P12931
Transporter and channel
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Glutamate receptor 1 (GRIA1) Glutamate-gated ion channel family P42261
Wolframin (WFS1) . O76024
Transcription factor
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Protein c-Fos (FOS) BZIP family P01100
Other
Click To Hide/Show 5 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Growth factor receptor-bound protein 2 (GRB2) GRB2/sem-5/DRK family P62993
SH3 domain-binding protein 5-like (SH3BP5L) SH3BP5 family Q7L8J4
Rab11 family-interacting protein 2 (RAB11FIP2) . Q7L804
Sprouty-related, EVH1 domain-containing protein 1 (SPRED1) . Q7Z699
TBC1 domain family member 14 (TBC1D14) . Q9P2M4

References

1 Tranylcypromine specificity for monoamine oxidase is limited by promiscuous protein labelling and lysosomal trapping. RSC Chem Biol. 2020 Aug 12;1(4):209-213. doi: 10.1039/d0cb00048e. eCollection 2020 Oct 1.
Mass spectrometry data entry: PXD018580
2 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
3 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
4 2H-Azirine-Based Reagents for Chemoselective Bioconjugation at Carboxyl Residues Inside Live Cells. J Am Chem Soc. 2020 Apr 1;142(13):6051-6059. doi: 10.1021/jacs.9b12116. Epub 2020 Mar 23.
5 A chemical proteomics approach for global mapping of functional lysines on cell surface of living cell. Nat Commun. 2024 Apr 8;15(1):2997. doi: 10.1038/s41467-024-47033-w.
Mass spectrometry data entry: PXD042888
6 Hydrazines as versatile chemical biology probes and drug-discovery tools for cofactor-dependent enzymes. bioRxiv, 2020-06.
7 Appendage and Scaffold Diverse Fully Functionalized Small-Molecule Probes via a Minimalist Terminal Alkyne-Aliphatic Diazirine Isocyanide. J Org Chem. 2018 Sep 21;83(18):11245-11253. doi: 10.1021/acs.joc.8b01831. Epub 2018 Aug 31.
8 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
9 A Chemical Proteomic Analysis of Illudin-Interacting Proteins. Chemistry. 2019 Sep 25;25(54):12644-12651. doi: 10.1002/chem.201902919. Epub 2019 Sep 3.
Mass spectrometry data entry: PXD014175
10 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
11 Ligand and Target Discovery by Fragment-Based Screening in Human Cells. Cell. 2017 Jan 26;168(3):527-541.e29. doi: 10.1016/j.cell.2016.12.029. Epub 2017 Jan 19.
12 Cell-based proteome profiling of potential dasatinib targets by use of affinity-based probes. J Am Chem Soc. 2012 Feb 15;134(6):3001-14. doi: 10.1021/ja208518u. Epub 2012 Feb 1.
13 Mapping Protein Targets of Bioactive Small Molecules Using Lipid-Based Chemical Proteomics. ACS Chem Biol. 2017 Oct 20;12(10):2671-2681. doi: 10.1021/acschembio.7b00581. Epub 2017 Sep 20.
Mass spectrometry data entry: PXD007570