General Information of Target

Target ID LDTP05231
Target Name Cytochrome c (CYCS)
Gene Name CYCS
Gene ID 54205
Synonyms
CYC; Cytochrome c
3D Structure
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2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Sequence
MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIW
GEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE
Target Bioclass
Transporter and channel
Family
Cytochrome c family
Subcellular location
Mitochondrion intermembrane space
Function
Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.; Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.
Uniprot ID
P99999
Ensemble ID
ENST00000305786.7
HGNC ID
HGNC:19986
ChEMBL ID
CHEMBL2189163

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 21 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
Alkylaryl probe 2
 Probe Info 
7.00  LDD0389  [1]
Alkylaryl probe 3
 Probe Info 
5.72  LDD0381  [1]
P8
 Probe Info 
1.55  LDD0455  [2]
TH211
 Probe Info 
Y49(20.00); Y68(20.00); Y47(18.74); Y75(9.18)  LDD0260  [3]
FBP2
 Probe Info 
3.00  LDD0323  [4]
ONAyne
 Probe Info 
N.A.  LDD0273  [5]
m-APA
 Probe Info 
7.96  LDD0403  [6]
DBIA
 Probe Info 
C15(1.22)  LDD1507  [7]
5E-2FA
 Probe Info 
N.A.  LDD2235  [8]
ATP probe
 Probe Info 
K28(0.00); K87(0.00); K88(0.00)  LDD0199  [9]
ATP probe
 Probe Info 
K6(0.00); K74(0.00); K40(0.00)  LDD0035  [10]
1d-yne
 Probe Info 
N.A.  LDD0356  [11]
NHS
 Probe Info 
K40(0.00); K100(0.00); K56(0.00)  LDD0010  [12]
SF
 Probe Info 
N.A.  LDD0028  [13]
STPyne
 Probe Info 
K54(0.00); K40(0.00)  LDD0009  [12]
1c-yne
 Probe Info 
N.A.  LDD0228  [11]
Acrolein
 Probe Info 
N.A.  LDD0217  [14]
Crotonaldehyde
 Probe Info 
N.A.  LDD0219  [14]
MPP-AC
 Probe Info 
N.A.  LDD0428  [15]
TER-AC
 Probe Info 
N.A.  LDD0426  [15]
HHS-465
 Probe Info 
K40(0.00); K54(0.00); Y49(0.00); E0(0.00)  LDD2240  [16]
PAL-AfBPP Probe
Click To Hide/Show 1 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
OEA-DA
 Probe Info 
3.32  LDD0046  [17]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HEK-293T C15(1.22)  LDD1507  [7]
 LDCM0226  AC11 HEK-293T C15(1.08)  LDD1509  [7]
 LDCM0237  AC12 HEK-293T C15(1.09)  LDD1510  [7]
 LDCM0259  AC14 HEK-293T C15(1.07)  LDD1512  [7]
 LDCM0270  AC15 HEK-293T C15(0.96)  LDD1513  [7]
 LDCM0276  AC17 HEK-293T C15(1.36)  LDD1515  [7]
 LDCM0278  AC19 HEK-293T C15(1.07)  LDD1517  [7]
 LDCM0280  AC20 HEK-293T C15(1.01)  LDD1519  [7]
 LDCM0281  AC21 HEK-293T C15(0.94)  LDD1520  [7]
 LDCM0282  AC22 HEK-293T C15(0.97)  LDD1521  [7]
 LDCM0283  AC23 HEK-293T C15(1.08)  LDD1522  [7]
 LDCM0285  AC25 HEK-293T C15(1.27)  LDD1524  [7]
 LDCM0287  AC27 HEK-293T C15(1.08)  LDD1526  [7]
 LDCM0288  AC28 HEK-293T C15(1.10)  LDD1527  [7]
 LDCM0289  AC29 HEK-293T C15(0.94)  LDD1528  [7]
 LDCM0290  AC3 HEK-293T C15(1.06)  LDD1529  [7]
 LDCM0291  AC30 HEK-293T C15(0.99)  LDD1530  [7]
 LDCM0292  AC31 HEK-293T C15(1.11)  LDD1531  [7]
 LDCM0294  AC33 HEK-293T C15(1.45)  LDD1533  [7]
 LDCM0296  AC35 HEK-293T C15(1.25)  LDD1535  [7]
 LDCM0297  AC36 HEK-293T C15(1.23)  LDD1536  [7]
 LDCM0298  AC37 HEK-293T C15(1.17)  LDD1537  [7]
 LDCM0299  AC38 HEK-293T C15(1.14)  LDD1538  [7]
 LDCM0300  AC39 HEK-293T C15(1.17)  LDD1539  [7]
 LDCM0301  AC4 HEK-293T C15(1.10)  LDD1540  [7]
 LDCM0303  AC41 HEK-293T C15(1.42)  LDD1542  [7]
 LDCM0305  AC43 HEK-293T C15(1.12)  LDD1544  [7]
 LDCM0306  AC44 HEK-293T C15(1.09)  LDD1545  [7]
 LDCM0307  AC45 HEK-293T C15(1.11)  LDD1546  [7]
 LDCM0308  AC46 HEK-293T C15(1.01)  LDD1547  [7]
 LDCM0309  AC47 HEK-293T C15(0.94)  LDD1548  [7]
 LDCM0311  AC49 HEK-293T C15(1.12)  LDD1550  [7]
 LDCM0312  AC5 HEK-293T C15(0.91)  LDD1551  [7]
 LDCM0314  AC51 HEK-293T C15(1.09)  LDD1553  [7]
 LDCM0315  AC52 HEK-293T C15(1.02)  LDD1554  [7]
 LDCM0316  AC53 HEK-293T C15(1.06)  LDD1555  [7]
 LDCM0317  AC54 HEK-293T C15(0.87)  LDD1556  [7]
 LDCM0318  AC55 HEK-293T C15(1.07)  LDD1557  [7]
 LDCM0320  AC57 HEK-293T C15(1.36)  LDD1559  [7]
 LDCM0322  AC59 HEK-293T C15(0.98)  LDD1561  [7]
 LDCM0323  AC6 HEK-293T C15(0.99)  LDD1562  [7]
 LDCM0324  AC60 HEK-293T C15(1.17)  LDD1563  [7]
 LDCM0325  AC61 HEK-293T C15(0.94)  LDD1564  [7]
 LDCM0326  AC62 HEK-293T C15(0.97)  LDD1565  [7]
 LDCM0327  AC63 HEK-293T C15(0.98)  LDD1566  [7]
 LDCM0334  AC7 HEK-293T C15(1.07)  LDD1568  [7]
 LDCM0248  AKOS034007472 HEK-293T C15(1.00)  LDD1511  [7]
 LDCM0356  AKOS034007680 HEK-293T C15(1.12)  LDD1570  [7]
 LDCM0156  Aniline NCI-H1299 7.96  LDD0403  [6]
 LDCM0108  Chloroacetamide HeLa N.A.  LDD0222  [14]
 LDCM0367  CL1 HEK-293T C15(1.00)  LDD1571  [7]
 LDCM0368  CL10 HEK-293T C15(1.27)  LDD1572  [7]
 LDCM0369  CL100 HEK-293T C15(1.03)  LDD1573  [7]
 LDCM0370  CL101 HEK-293T C15(1.05)  LDD1574  [7]
 LDCM0372  CL103 HEK-293T C15(1.14)  LDD1576  [7]
 LDCM0373  CL104 HEK-293T C15(1.10)  LDD1577  [7]
 LDCM0374  CL105 HEK-293T C15(1.03)  LDD1578  [7]
 LDCM0376  CL107 HEK-293T C15(1.23)  LDD1580  [7]
 LDCM0377  CL108 HEK-293T C15(1.10)  LDD1581  [7]
 LDCM0378  CL109 HEK-293T C15(1.16)  LDD1582  [7]
 LDCM0379  CL11 HEK-293T C15(0.99)  LDD1583  [7]
 LDCM0381  CL111 HEK-293T C15(0.98)  LDD1585  [7]
 LDCM0382  CL112 HEK-293T C15(1.08)  LDD1586  [7]
 LDCM0383  CL113 HEK-293T C15(1.13)  LDD1587  [7]
 LDCM0385  CL115 HEK-293T C15(1.06)  LDD1589  [7]
 LDCM0386  CL116 HEK-293T C15(1.13)  LDD1590  [7]
 LDCM0387  CL117 HEK-293T C15(1.13)  LDD1591  [7]
 LDCM0389  CL119 HEK-293T C15(1.21)  LDD1593  [7]
 LDCM0391  CL120 HEK-293T C15(1.00)  LDD1595  [7]
 LDCM0392  CL121 HEK-293T C15(1.09)  LDD1596  [7]
 LDCM0394  CL123 HEK-293T C15(1.05)  LDD1598  [7]
 LDCM0395  CL124 HEK-293T C15(0.94)  LDD1599  [7]
 LDCM0396  CL125 HEK-293T C15(0.93)  LDD1600  [7]
 LDCM0398  CL127 HEK-293T C15(0.90)  LDD1602  [7]
 LDCM0399  CL128 HEK-293T C15(1.05)  LDD1603  [7]
 LDCM0400  CL13 HEK-293T C15(0.95)  LDD1604  [7]
 LDCM0402  CL15 HEK-293T C15(1.17)  LDD1606  [7]
 LDCM0403  CL16 HEK-293T C15(1.04)  LDD1607  [7]
 LDCM0404  CL17 HEK-293T C15(1.40)  LDD1608  [7]
 LDCM0406  CL19 HEK-293T C15(1.05)  LDD1610  [7]
 LDCM0408  CL20 HEK-293T C15(1.03)  LDD1612  [7]
 LDCM0409  CL21 HEK-293T C15(1.22)  LDD1613  [7]
 LDCM0410  CL22 HEK-293T C15(1.08)  LDD1614  [7]
 LDCM0411  CL23 HEK-293T C15(1.09)  LDD1615  [7]
 LDCM0413  CL25 HEK-293T C15(0.85)  LDD1617  [7]
 LDCM0415  CL27 HEK-293T C15(1.00)  LDD1619  [7]
 LDCM0416  CL28 HEK-293T C15(1.27)  LDD1620  [7]
 LDCM0417  CL29 HEK-293T C15(1.63)  LDD1621  [7]
 LDCM0418  CL3 HEK-293T C15(0.94)  LDD1622  [7]
 LDCM0420  CL31 HEK-293T C15(1.12)  LDD1624  [7]
 LDCM0421  CL32 HEK-293T C15(1.21)  LDD1625  [7]
 LDCM0422  CL33 HEK-293T C15(1.08)  LDD1626  [7]
 LDCM0423  CL34 HEK-293T C15(0.97)  LDD1627  [7]
 LDCM0424  CL35 HEK-293T C15(1.04)  LDD1628  [7]
 LDCM0426  CL37 HEK-293T C15(0.91)  LDD1630  [7]
 LDCM0428  CL39 HEK-293T C15(1.15)  LDD1632  [7]
 LDCM0429  CL4 HEK-293T C15(0.97)  LDD1633  [7]
 LDCM0430  CL40 HEK-293T C15(0.99)  LDD1634  [7]
 LDCM0431  CL41 HEK-293T C15(1.59)  LDD1635  [7]
 LDCM0433  CL43 HEK-293T C15(1.00)  LDD1637  [7]
 LDCM0434  CL44 HEK-293T C15(1.10)  LDD1638  [7]
 LDCM0435  CL45 HEK-293T C15(1.05)  LDD1639  [7]
 LDCM0436  CL46 HEK-293T C15(0.96)  LDD1640  [7]
 LDCM0437  CL47 HEK-293T C15(1.06)  LDD1641  [7]
 LDCM0439  CL49 HEK-293T C15(0.93)  LDD1643  [7]
 LDCM0440  CL5 HEK-293T C15(1.00)  LDD1644  [7]
 LDCM0443  CL52 HEK-293T C15(1.09)  LDD1646  [7]
 LDCM0444  CL53 HEK-293T C15(1.51)  LDD1647  [7]
 LDCM0446  CL55 HEK-293T C15(1.06)  LDD1649  [7]
 LDCM0447  CL56 HEK-293T C15(1.08)  LDD1650  [7]
 LDCM0448  CL57 HEK-293T C15(1.28)  LDD1651  [7]
 LDCM0449  CL58 HEK-293T C15(1.06)  LDD1652  [7]
 LDCM0450  CL59 HEK-293T C15(1.04)  LDD1653  [7]
 LDCM0453  CL61 HEK-293T C15(0.92)  LDD1656  [7]
 LDCM0455  CL63 HEK-293T C15(0.98)  LDD1658  [7]
 LDCM0456  CL64 HEK-293T C15(1.11)  LDD1659  [7]
 LDCM0457  CL65 HEK-293T C15(1.46)  LDD1660  [7]
 LDCM0459  CL67 HEK-293T C15(1.14)  LDD1662  [7]
 LDCM0460  CL68 HEK-293T C15(1.11)  LDD1663  [7]
 LDCM0461  CL69 HEK-293T C15(1.07)  LDD1664  [7]
 LDCM0462  CL7 HEK-293T C15(0.84)  LDD1665  [7]
 LDCM0463  CL70 HEK-293T C15(1.16)  LDD1666  [7]
 LDCM0464  CL71 HEK-293T C15(1.19)  LDD1667  [7]
 LDCM0466  CL73 HEK-293T C15(0.92)  LDD1669  [7]
 LDCM0469  CL76 HEK-293T C15(1.02)  LDD1672  [7]
 LDCM0470  CL77 HEK-293T C15(1.28)  LDD1673  [7]
 LDCM0472  CL79 HEK-293T C15(1.08)  LDD1675  [7]
 LDCM0473  CL8 HEK-293T C15(0.93)  LDD1676  [7]
 LDCM0474  CL80 HEK-293T C15(0.98)  LDD1677  [7]
 LDCM0475  CL81 HEK-293T C15(1.13)  LDD1678  [7]
 LDCM0476  CL82 HEK-293T C15(1.26)  LDD1679  [7]
 LDCM0477  CL83 HEK-293T C15(1.18)  LDD1680  [7]
 LDCM0479  CL85 HEK-293T C15(0.86)  LDD1682  [7]
 LDCM0481  CL87 HEK-293T C15(0.77)  LDD1684  [7]
 LDCM0482  CL88 HEK-293T C15(0.83)  LDD1685  [7]
 LDCM0483  CL89 HEK-293T C15(1.02)  LDD1686  [7]
 LDCM0484  CL9 HEK-293T C15(1.17)  LDD1687  [7]
 LDCM0486  CL91 HEK-293T C15(0.83)  LDD1689  [7]
 LDCM0487  CL92 HEK-293T C15(1.08)  LDD1690  [7]
 LDCM0488  CL93 HEK-293T C15(0.98)  LDD1691  [7]
 LDCM0489  CL94 HEK-293T C15(1.02)  LDD1692  [7]
 LDCM0490  CL95 HEK-293T C15(0.96)  LDD1693  [7]
 LDCM0492  CL97 HEK-293T C15(0.98)  LDD1695  [7]
 LDCM0494  CL99 HEK-293T C15(0.99)  LDD1697  [7]
 LDCM0495  E2913 HEK-293T C15(1.14)  LDD1698  [7]
 LDCM0468  Fragment33 HEK-293T C15(1.02)  LDD1671  [7]
 LDCM0107  IAA HeLa N.A.  LDD0221  [14]
 LDCM0109  NEM HeLa N.A.  LDD0223  [14]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 4 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Eukaryotic translation initiation factor 3 subunit F (EIF3F) EIF-3 subunit F family O00303
Cytochrome c oxidase assembly factor 7 (COA7) Hcp beta-lactamase family Q96BR5
Tyrosine-protein kinase Fyn (FYN) Tyr protein kinase family P06241
LON peptidase N-terminal domain and RING finger protein 2 (LONRF2) . Q1L5Z9
Transporter and channel
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Amyloid-beta precursor protein (APP) APP family P05067
Alpha-synuclein (SNCA) Synuclein family P37840
Apoptotic protease-activating factor 1 (APAF1) . O14727
Transcription factor
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Zinc finger and BTB domain-containing protein 14 (ZBTB14) Krueppel C2H2-type zinc-finger protein family O43829
Achaete-scute homolog 4 (ASCL4) . Q6XD76
Forkhead box protein D4-like 6 (FOXD4L6) . Q3SYB3
Other
Click To Hide/Show 8 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Protein FAM9A (FAM9A) FAM9 family Q8IZU1
Keratin, type I cytoskeletal 40 (KRT40) Intermediate filament family Q6A162
Leucine-rich repeat-containing protein 56 (LRRC56) LRRC56 family Q8IYG6
PHD finger protein 23 (PHF23) PHF23 family Q9BUL5
SNW domain-containing protein 1 (SNW1) SNW family Q13573
BTB/POZ domain-containing protein KCTD17 (KCTD17) . Q8N5Z5
Putative uncharacterized protein RUSC1-AS1 (RUSC1-AS1) . Q66K80
Uncharacterized protein C3orf36 (C3orf36) . Q3SXR2

The Drug(s) Related To This Target

Approved
Click To Hide/Show 2 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Minocycline Small molecular drug DB01017
Artenimol . DB11638
Investigative
Click To Hide/Show 6 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Protoporphyrin Ix Containing Co Small molecular drug DB02110
Trimethyllysine Small molecular drug DB03977
Ferroheme C . DB03317
Imidazole . DB03366
Zinc Protoporphyrin . DB03934
Zinc Substituted Heme C . DB04249

References

1 Hydrazines as versatile chemical biology probes and drug-discovery tools for cofactor-dependent enzymes. bioRxiv, 2020-06.
2 Comparison of Different Competitive Proteome Profiling Approaches in Target Identification of Covalent Inhibitors. Chembiochem. 2022 Dec 16;23(24):e202200389. doi: 10.1002/cbic.202200389. Epub 2022 Nov 22.
3 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
4 Tranylcypromine specificity for monoamine oxidase is limited by promiscuous protein labelling and lysosomal trapping. RSC Chem Biol. 2020 Aug 12;1(4):209-213. doi: 10.1039/d0cb00048e. eCollection 2020 Oct 1.
Mass spectrometry data entry: PXD018580
5 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
6 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
7 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
8 Global profiling of functional histidines in live cells using small-molecule photosensitizer and chemical probe relay labelling. Nat Chem. 2024 Jun 4. doi: 10.1038/s41557-024-01545-6. Online ahead of print.
Mass spectrometry data entry: PXD042377
9 Targeted Proteomic Approaches for Proteome-Wide Characterizations of the AMP-Binding Capacities of Kinases. J Proteome Res. 2022 Aug 5;21(8):2063-2070. doi: 10.1021/acs.jproteome.2c00225. Epub 2022 Jul 12.
10 Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer. J Proteome Res. 2018 Jan 5;17(1):63-75. doi: 10.1021/acs.jproteome.7b00329. Epub 2017 Nov 22.
Mass spectrometry data entry: PXD006095 , PXD006096
11 Tunable Amine-Reactive Electrophiles for Selective Profiling of Lysine. Angew Chem Int Ed Engl. 2022 Jan 26;61(5):e202112107. doi: 10.1002/anie.202112107. Epub 2021 Dec 16.
12 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
13 Solid Phase Synthesis of Fluorosulfate Containing Macrocycles for Chemoproteomic Workflows. bioRxiv [Preprint]. 2023 Feb 18:2023.02.17.529022. doi: 10.1101/2023.02.17.529022.
Mass spectrometry data entry: PXD039931
14 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
15 Differently Tagged Probes for Protein Profiling of Mitochondria. Chembiochem. 2019 May 2;20(9):1155-1160. doi: 10.1002/cbic.201800735. Epub 2019 Mar 26.
16 Global profiling identifies a stress-responsive tyrosine site on EDC3 regulating biomolecular condensate formation. Cell Chem Biol. 2022 Dec 15;29(12):1709-1720.e7. doi: 10.1016/j.chembiol.2022.11.008. Epub 2022 Dec 6.
Mass spectrometry data entry: PXD038010
17 Mapping Protein Targets of Bioactive Small Molecules Using Lipid-Based Chemical Proteomics. ACS Chem Biol. 2017 Oct 20;12(10):2671-2681. doi: 10.1021/acschembio.7b00581. Epub 2017 Sep 20.
Mass spectrometry data entry: PXD007570