General Information of Probe

Probe ID
LDPC0201
Probe Name
Alkylaryl probe 3
Probe Type
ABPP Probe
Structure
2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 231.299
Lipid-water partition coefficient (xlogp) 0.4455
Rotatable Bond Count (rotbonds) 7
Hydrogen Bond Donor Count (hbonddonor) 3
Hydrogen Bond Acceptor Count (hbondacc) 3
Chemical Identifiers
Formula
C13H17N3O
Canonical SMILES
[H]C#CC([H])([H])C([H])([H])N([H])C(=O)c1c([H])c([H])c(C([H])([H])C([H])([H])N([H])N([H])[H])c([H])c1[H]
InChI
InChI=1S/C13H17N3O/c1-2-3-9-15-13(17)12-6-4-11(5-7-12)8-10-16-14/h1,4-7,16H,3,8-10,14H2,(H,15,17)
InChIKey
PFOISSVZTIBCCB-UHFFFAOYSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

73 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
2-aminoethanethiol dioxygenase (ADO) LDTP10828 20.00  LDD0381 
3-ketoacyl-CoA thiolase, peroxisomal (ACAA1) LDTP02329 20.00  LDD0381 
4-trimethylaminobutyraldehyde dehydrogenase (ALDH9A1) LDTP04232 7.29  LDD0282 
5'-3' exonuclease PLD3 (PLD3) LDTP08476 4.68  LDD0283 
5-demethoxyubiquinone hydroxylase, mitochondrial (COQ7) LDTP10984 20.00  LDD0381 
Acetyl-CoA acetyltransferase, cytosolic (ACAT2) LDTP11321 15.69  LDD0381 
Acid ceramidase (ASAH1) LDTP05905 3.82  LDD0384 
Acireductone dioxygenase (ADI1) LDTP11268 20.00  LDD0381 
Acyl-CoA (8-3)-desaturase (FADS1) LDTP00968 5.08  LDD0282 
Acyl-CoA 6-desaturase (FADS2) LDTP01699 20.00  LDD0282 
Aldehyde dehydrogenase 1A1 (ALDH1A1) LDTP01767 20.00  LDD0381 
Aldehyde dehydrogenase family 3 member A2 (ALDH3A2) LDTP04437 3.68  LDD0282 
Aldehyde dehydrogenase X, mitochondrial (ALDH1B1) LDTP03560 5.56  LDD0282 
Aldehyde dehydrogenase, mitochondrial (ALDH2) LDTP02074 11.81  LDD0282 
Aldo-keto reductase family 1 member B1 (AKR1B1) LDTP02765 7.14  LDD0381 
Amine oxidase [flavin-containing] A (MAOA) LDTP03109 20.00  LDD0282 
Amine oxidase [flavin-containing] B (MAOB) LDTP03384 20.00  LDD0282 
Apoptosis-inducing factor 1, mitochondrial (AIFM1) LDTP01687 20.00  LDD0384 
Biotinidase (BTD) LDTP04030 3.15  LDD0282 
Bleomycin hydrolase (BLMH) LDTP05992 7.13  LDD0381 
Branched-chain-amino-acid aminotransferase, cytosolic (BCAT1) LDTP04622 3.23  LDD0282 
Branched-chain-amino-acid aminotransferase, mitochondrial (BCAT2) LDTP00624 17.57  LDD0282 
Carboxymethylenebutenolidase homolog (CMBL) LDTP10215 15.30  LDD0381 
Cathepsin B (CTSB) LDTP02223 4.74  LDD0384 
Cathepsin D (CTSD) LDTP02198 10.30  LDD0282 
Cathepsin S (CTSS) LDTP03329 4.78  LDD0283 
Cathepsin Z (CTSZ) LDTP13147 5.98  LDD0283 
Cyclin-dependent kinase 11A (CDK11A) LDTP13752 12.36  LDD0382 
DBH-like monooxygenase protein 1 (MOXD1) LDTP07662 8.32  LDD0282 
Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial (ECH1) LDTP05724 4.38  LDD0282 
Dipeptidyl peptidase 3 (DPP3) LDTP12803 20.00  LDD0381 
Endoribonuclease LACTB2 (LACTB2) LDTP06910 12.75  LDD0381 
Eukaryotic translation initiation factor 5B (EIF5B) LDTP01063 7.78  LDD0384 
Ferritin heavy chain (FTH1) LDTP01974 5.32  LDD0383 
Glutathione S-transferase 3, mitochondrial (MGST3) LDTP00464 20.00  LDD0381 
Glutathione S-transferase P (GSTP1) LDTP02333 5.78  LDD0381 
Heme oxygenase 2 (HMOX2) LDTP03540 3.32  LDD0282 
Holocytochrome c-type synthase (HCCS) LDTP04581 7.93  LDD0282 
L-2-hydroxyglutarate dehydrogenase, mitochondrial (L2HGDH) LDTP12105 8.01  LDD0382 
Lactoylglutathione lyase (GLO1) LDTP05434 13.53  LDD0381 
Lysine-specific histone demethylase 1A (KDM1A) LDTP00957 3.93  LDD0282 
Lysosomal protective protein (CTSA) LDTP02505 3.17  LDD0384 
Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial (MCCC2) LDTP12227 4.81  LDD0384 
Mitochondrial intermediate peptidase (MIPEP) LDTP10981 10.00  LDD0381 
Neurolysin, mitochondrial (NLN) LDTP11494 20.00  LDD0381 
Nucleoside diphosphate kinase 6 (NME6) LDTP01211 20.00  LDD0384 
Oxidized purine nucleoside triphosphate hydrolase (NUDT1) LDTP03816 20.00  LDD0381 
Parkinson disease protein 7 (PARK7) LDTP10878 6.18  LDD0381 
Phytanoyl-CoA dioxygenase domain-containing protein 1 (PHYHD1) LDTP07065 20.00  LDD0381 
Prenylcysteine oxidase 1 (PCYOX1) LDTP13282 7.69  LDD0283 
Prolyl 4-hydroxylase subunit alpha-1 (P4HA1) LDTP02679 12.92  LDD0381 
Prostaglandin E synthase 2 (PTGES2) LDTP12040 14.64  LDD0282 
Protein phosphatase 1G (PPM1G) LDTP00616 20.00  LDD0382 
Putative transferase CAF17, mitochondrial (IBA57) LDTP07110 8.31  LDD0381 
Retinal dehydrogenase 2 (ALDH1A2) LDTP01419 3.13  LDD0282 
Retinaldehyde dehydrogenase 3 (ALDH1A3) LDTP04134 7.47  LDD0282 
Ribonucleoside-diphosphate reductase subunit M2 B (RRM2B) LDTP07989 20.00  LDD0381 
Ribosyldihydronicotinamide dehydrogenase [quinone] (NQO2) LDTP02824 5.03  LDD0282 
Secernin-2 (SCRN2) LDTP15725 20.00  LDD0282 
Secernin-3 (SCRN3) LDTP17022 3.12  LDD0382 
Serine--tRNA ligase, mitochondrial (SARS2) LDTP12319 20.00  LDD0384 
Sialic acid synthase (NANS) LDTP12473 4.64  LDD0282 
Stearoyl-CoA desaturase (SCD) LDTP00344 20.00  LDD0282 
Sterol carrier protein 2 (SCP2) LDTP03163 20.00  LDD0282 
Succinate dehydrogenase flavoprotein subunit, mitochondrial (SDHA) LDTP03572 20.00  LDD0382 
Succinate-semialdehyde dehydrogenase, mitochondrial (ALDH5A1) LDTP04438 6.62  LDD0381 
Synaptic vesicle membrane protein VAT-1 homolog (VAT1) LDTP10887 20.00  LDD0381 
Thioredoxin domain-containing protein 12 (TXNDC12) LDTP01707 11.65  LDD0381 
Trifunctional enzyme subunit beta, mitochondrial (HADHB) LDTP04671 3.03  LDD0384 
Trimethyllysine dioxygenase, mitochondrial (TMLHE) LDTP12679 15.11  LDD0381 
Tripeptidyl-peptidase 1 (TPP1) LDTP00428 5.41  LDD0384 
Xaa-Pro aminopeptidase 1 (XPNPEP1) LDTP12444 14.14  LDD0381 
Zinc phosphodiesterase ELAC protein 2 (ELAC2) LDTP11054 17.57  LDD0381 
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⏷ Show the Full List of 73 Enzyme
11 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Amino acid transporter heavy chain SLC3A2 (SLC3A2) LDTP02256 20.00  LDD0381 
Cytochrome c (CYCS) LDTP05231 5.72  LDD0381 
High affinity cationic amino acid transporter 1 (SLC7A1) LDTP03559 5.65  LDD0381 
Mitochondrial carnitine/acylcarnitine carrier protein (SLC25A20) LDTP00865 20.00  LDD0381 
Mitochondrial carrier homolog 2 (MTCH2) LDTP14235 6.88  LDD0381 
Monocarboxylate transporter 1 (SLC16A1) LDTP04592 3.93  LDD0382 
NPC intracellular cholesterol transporter 2 (NPC2) LDTP04940 3.21  LDD0384 
Prosaposin (PSAP) LDTP02215 4.04  LDD0384 
Solute carrier family 25 member 3 (SLC25A3) LDTP05238 6.74  LDD0381 
Voltage-dependent anion-selective channel protein 2 (VDAC2) LDTP04071 6.41  LDD0381 
Voltage-dependent anion-selective channel protein 3 (VDAC3) LDTP13824 7.30  LDD0381 
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⏷ Show the Full List of 11 Transporter and channel
23 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
17S U2 SnRNP complex component HTATSF1 (HTATSF1) LDTP00849 20.00  LDD0382 
Craniofacial development protein 1 (CFDP1) LDTP16193 20.00  LDD0382 
Cytochrome c oxidase copper chaperone (COX17) LDTP06030 3.15  LDD0282 
F-box only protein 22 (FBXO22) LDTP09187 20.00  LDD0381 
General transcription factor IIF subunit 1 (GTF2F1) LDTP03729 20.00  LDD0382 
Glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial (GATD3) LDTP16938 7.75  LDD0381 
GPALPP motifs-containing protein 1 (GPALPP1) LDTP17638 13.00  LDD0382 
Microfibrillar-associated protein 1 (MFAP1) LDTP04668 20.00  LDD0382 
Microtubule-associated protein RP/EB family member 1 (MAPRE1) LDTP06444 6.16  LDD0383 
Neudesin (NENF) LDTP13630 5.96  LDD0381 
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial (NFU1) LDTP13622 5.27  LDD0384 
Nucleophosmin (NPM1) LDTP02164 3.36  LDD0384 
Probable RNA-binding protein EIF1AD (EIF1AD) LDTP09008 20.00  LDD0382 
Protein IWS1 homolog (IWS1) LDTP10822 20.00  LDD0382 
Protein pelota homolog (PELO) LDTP11138 7.84  LDD0382 
Protein SET (SET) LDTP05277 16.68  LDD0382 
RNA polymerase II-associated factor 1 homolog (PAF1) LDTP08965 4.14  LDD0382 
RNA polymerase-associated protein CTR9 homolog (CTR9) LDTP07563 3.55  LDD0382 
Scaffold attachment factor B2 (SAFB2) LDTP06054 11.59  LDD0384 
Small acidic protein (SMAP) LDTP19007 15.68  LDD0382 
Transcription elongation factor SPT5 (SUPT5H) LDTP00236 20.00  LDD0382 
WD repeat-containing protein 70 (WDR70) LDTP18478 20.00  LDD0382 
WW domain-binding protein 11 (WBP11) LDTP13920 20.00  LDD0382 
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⏷ Show the Full List of 23 Other

Competitor(s) Related To This Probe

Competitor ID Name Concentration Cell-system Ref
 LDCM0099  Phenelzine 10 mM Human normal cells (HEK-293T) [2]

Full Information of The Labelling Profiles of This Probe

Quantification: Probe vs DMSO
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Interaction Atlas ID
  
Experiment 2 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Breast
Disease Model
Breast adenocarcinoma [ICD-11:2C60]
Model Name
Human breast adenocarcinoma cells (MDA-MB-231)
Interaction Atlas ID
Quantification: Probe vs (Probe+Competitor)
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [2]
Probe concentration
1 mM
Quantitative Method
SILAC
Competitor Name
Phenelzine
Competitor Concentration
10 mM
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Interaction Atlas ID
  
Experiment 2 Reporting the Labelling Profiles of This Probe
REF [2]
Probe concentration
1 mM
Quantitative Method
SILAC
Competitor Name
Phenelzine
Competitor Concentration
10 mM
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Breast
Disease Model
Breast adenocarcinoma [ICD-11:2C60]
Model Name
Human breast adenocarcinoma cells (MDA-MB-231)
Interaction Atlas ID
  
Experiment 3 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
Competitor Name
Phenelzine
Competitor Concentration
10 mM
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Interaction Atlas ID
  
Experiment 4 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
1 mM
Quantitative Method
SILAC
Competitor Name
Phenelzine
Competitor Concentration
10 mM
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Breast
Disease Model
Breast adenocarcinoma [ICD-11:2C60]
Model Name
Human breast adenocarcinoma cells (MDA-MB-231)
Interaction Atlas ID

References

1 Hydrazines as versatile chemical biology probes and drug-discovery tools for cofactor-dependent enzymes. bioRxiv, 2020-06.
2 Activity-Based Hydrazine Probes for Protein Profiling of Electrophilic Functionality in Therapeutic Targets. ACS Cent Sci. 2021 Sep 22;7(9):1524-1534. doi: 10.1021/acscentsci.1c00616. Epub 2021 Aug 19.