Details of the Target

General Information of Target

Target ID LDTP02150
Target Name ATP synthase subunit beta, mitochondrial (ATP5F1B)
Gene Name ATP5F1B
Gene ID 506
Synonyms
ATP5B; ATPMB; ATPSB; ATP synthase subunit beta, mitochondrial; EC 7.1.2.2; ATP synthase F1 subunit beta
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAAT
GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV
RGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQ
EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT
REGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQD
VLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAI
YVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDV
ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGK
LVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEHSS
Target Bioclass
Enzyme
Family
ATPase alpha/beta chains family
Subcellular location
Mitochondrion inner membrane
Function
Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Uniprot ID
P06576
Ensemble ID
ENST00000262030.8
HGNC ID
HGNC:830
ChEMBL ID
CHEMBL2062350

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 34 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
P8
 Probe Info  		10.00  LDD0451  [1]
A-EBA
 Probe Info  		2.25  LDD0215  [2]
CHEMBL5175495
 Probe Info  		6.30  LDD0196  [3]
CY4
 Probe Info  		100.00  LDD0244  [4]
N1
 Probe Info  		100.00  LDD0242  [4]
C-Sul
 Probe Info  		5.70  LDD0066  [5]
TH211
 Probe Info  		Y331(20.00); Y418(20.00); Y431(20.00); Y230(6.39)  LDD0257  [6]
TH214
 Probe Info  		Y230(20.00); Y247(20.00)  LDD0258  [6]
TH216
 Probe Info  		Y196(20.00); Y230(20.00); Y331(20.00); Y395(20.00)  LDD0259  [6]
YN-1
 Probe Info  		100.00  LDD0444  [7]
AZ-9
 Probe Info  		D402(1.42)  LDD2208  [8]
ONAyne
 Probe Info  		K426(0.00); K133(0.00); K159(0.00); K485(0.00)  LDD0273  [9]
OPA-S-S-alkyne
 Probe Info  		K522(3.50); K133(3.53); K264(4.08)  LDD3494  [10]
Probe 1
 Probe Info  		Y230(32.02); Y247(19.59); Y269(12.38); Y395(31.08)  LDD3495  [11]
HHS-482
 Probe Info  		Y395(0.83); Y418(0.82); Y431(1.06)  LDD0285  [12]
HHS-475
 Probe Info  		Y395(0.58); Y431(0.86); Y418(0.91)  LDD0264  [13]
5E-2FA
 Probe Info  		H227(0.00); H248(0.00); H477(0.00); H417(0.00)  LDD2235  [14]
ATP probe
 Probe Info  		K522(0.00); K124(0.00); K426(0.00); K259(0.00)  LDD0199  [15]
m-APA
 Probe Info  		H227(0.00); H248(0.00); H477(0.00); H501(0.00)  LDD2231  [14]
ATP probe
 Probe Info  		K124(0.00); K161(0.00); K133(0.00); K480(0.00)  LDD0035  [16]
1d-yne
 Probe Info  		N.A.  LDD0356  [17]
NHS
 Probe Info  		K426(0.00); K259(0.00); K264(0.00); K124(0.00)  LDD0010  [18]
OSF
 Probe Info  		H417(0.00); Y418(0.00)  LDD0029  [19]
SF
 Probe Info  		Y431(0.00); Y361(0.00); K485(0.00); K522(0.00)  LDD0028  [19]
STPyne
 Probe Info  		K198(0.00); K201(0.00); K133(0.00)  LDD0009  [18]
1c-yne
 Probe Info  		K133(0.00); K351(0.00); K259(0.00); K161(0.00)  LDD0228  [17]
Acrolein
 Probe Info  		H477(0.00); H248(0.00); H102(0.00); H417(0.00)  LDD0217  [20]
Crotonaldehyde
 Probe Info  		H417(0.00); H102(0.00); H527(0.00)  LDD0219  [20]
Methacrolein
 Probe Info  		H527(0.00); H102(0.00)  LDD0218  [20]
W1
 Probe Info  		E472(0.00); Q469(0.00); H477(0.00)  LDD0236  [21]
MPP-AC
 Probe Info  		N.A.  LDD0428  [22]
TER-AC
 Probe Info  		N.A.  LDD0426  [22]
TPP-AC
 Probe Info  		N.A.  LDD0427  [22]
HHS-465
 Probe Info  		K432(0.00); Y418(0.00); Y431(0.00); K133(0.00)  LDD2240  [23]
PAL-AfBPP Probe
Click To Hide/Show 42 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C003
 Probe Info  		14.42  LDD1713  [24]
C017
 Probe Info  		7.73  LDD1725  [24]
C040
 Probe Info  		7.31  LDD1740  [24]
C041
 Probe Info  		6.45  LDD1741  [24]
C044
 Probe Info  		5.86  LDD1743  [24]
C056
 Probe Info  		18.64  LDD1753  [24]
C063
 Probe Info  		9.92  LDD1760  [24]
C082
 Probe Info  		5.62  LDD1774  [24]
C087
 Probe Info  		7.67  LDD1779  [24]
C102
 Probe Info  		5.86  LDD1790  [24]
C106
 Probe Info  		16.68  LDD1793  [24]
C112
 Probe Info  		39.95  LDD1799  [24]
C158
 Probe Info  		15.89  LDD1838  [24]
C161
 Probe Info  		11.88  LDD1841  [24]
C201
 Probe Info  		25.11  LDD1877  [24]
C218
 Probe Info  		12.91  LDD1892  [24]
C232
 Probe Info  		34.54  LDD1905  [24]
C269
 Probe Info  		9.06  LDD1939  [24]
C274
 Probe Info  		11.63  LDD1944  [24]
C284
 Probe Info  		22.78  LDD1954  [24]
C305
 Probe Info  		11.16  LDD1974  [24]
C338
 Probe Info  		14.93  LDD2001  [24]
C355
 Probe Info  		22.94  LDD2016  [24]
C362
 Probe Info  		39.95  LDD2023  [24]
C388
 Probe Info  		51.27  LDD2047  [24]
C391
 Probe Info  		15.14  LDD2050  [24]
C407
 Probe Info  		19.70  LDD2064  [24]
FFF probe11
 Probe Info  		7.22  LDD0471  [25]
FFF probe13
 Probe Info  		17.82  LDD0475  [25]
FFF probe14
 Probe Info  		13.27  LDD0477  [25]
FFF probe2
 Probe Info  		9.64  LDD0463  [25]
FFF probe3
 Probe Info  		18.41  LDD0464  [25]
FFF probe6
 Probe Info  		8.80  LDD0467  [25]
FFF probe9
 Probe Info  		5.67  LDD0470  [25]
JN0003
 Probe Info  		15.57  LDD0469  [25]
VE-P
 Probe Info  		N.A.  LDD0396  [26]
BD-F
 Probe Info  		E391(0.00); L392(0.00)  LDD0024  [27]
TM-F
 Probe Info  		A388(0.00); G393(0.00); A397(0.00)  LDD0020  [27]
Photocelecoxib
 Probe Info  		I389(0.00); E391(0.00)  LDD0019  [28]
Photonaproxen
 Probe Info  		Y395(0.00); D402(0.00)  LDD0156  [28]
OEA-DA
 Probe Info  		4.98  LDD0046  [29]
STS-1
 Probe Info  		N.A.  LDD0069  [30]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0108  Chloroacetamide HeLa H477(0.00); H248(0.00); H417(0.00); H102(0.00)  LDD0222  [20]
 LDCM0189  Compound 16 HEK-293T 6.31  LDD0492  [25]
 LDCM0191  Compound 21 HEK-293T 3.84  LDD0493  [25]
 LDCM0190  Compound 34 HEK-293T 5.74  LDD0497  [25]
 LDCM0192  Compound 35 HEK-293T 4.81  LDD0491  [25]
 LDCM0193  Compound 36 HEK-293T 3.51  LDD0494  [25]
 LDCM0194  Compound 37 HEK-293T 5.36  LDD0498  [25]
 LDCM0195  Compound 38 HEK-293T 7.10  LDD0499  [25]
 LDCM0197  Compound 40 HEK-293T 3.84  LDD0495  [25]
 LDCM0116  HHS-0101 DM93 Y395(0.58); Y431(0.86); Y418(0.91)  LDD0264  [13]
 LDCM0117  HHS-0201 DM93 Y395(0.18); Y418(1.20); Y431(1.21)  LDD0265  [13]
 LDCM0118  HHS-0301 DM93 Y395(0.27); Y431(0.78); Y418(0.87)  LDD0266  [13]
 LDCM0119  HHS-0401 DM93 Y395(0.23); Y418(1.10); Y431(1.84)  LDD0267  [13]
 LDCM0120  HHS-0701 DM93 Y395(0.25); Y431(0.97); Y418(1.62)  LDD0268  [13]
 LDCM0107  IAA HeLa H477(0.00); H102(0.00); H417(0.00); H527(0.00)  LDD0221  [20]
 LDCM0123  JWB131 DM93 Y395(0.83); Y418(0.82); Y431(1.06)  LDD0285  [12]
 LDCM0124  JWB142 DM93 Y395(3.13); Y418(1.07); Y431(1.51)  LDD0286  [12]
 LDCM0125  JWB146 DM93 Y395(5.89); Y418(0.89); Y431(1.37)  LDD0287  [12]
 LDCM0126  JWB150 DM93 Y395(8.95); Y418(4.08); Y431(3.90)  LDD0288  [12]
 LDCM0127  JWB152 DM93 Y395(6.95); Y418(2.11); Y431(2.74)  LDD0289  [12]
 LDCM0128  JWB198 DM93 Y395(0.61); Y418(1.19); Y431(1.22)  LDD0290  [12]
 LDCM0129  JWB202 DM93 Y395(1.93); Y418(0.76); Y431(0.93)  LDD0291  [12]
 LDCM0130  JWB211 DM93 Y395(0.84); Y418(1.02); Y431(1.22)  LDD0292  [12]
 LDCM0109  NEM HeLa H477(0.00); H417(0.00); H102(0.00); H527(0.00)  LDD0223  [20]
 LDCM0111  W14 Hep-G2 K485(0.52)  LDD0238  [21]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Transporter and channel
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
14-3-3 protein zeta/delta (YWHAZ) 14-3-3 family P63104
ATP synthase subunit alpha, mitochondrial (ATP5F1A) ATPase alpha/beta chains family P25705
ATPase inhibitor, mitochondrial (ATP5IF1) ATPase inhibitor family Q9UII2
Other
Click To Hide/Show 4 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
ATP synthase mitochondrial F1 complex assembly factor 2 (ATPAF2) ATP12 family Q8N5M1
Ataxin-1 (ATXN1) ATXN1 family P54253
Bystin (BYSL) Bystin family Q13895
Ligand of Numb protein X 2 (LNX2) . Q8N448

The Drug(s) Related To This Target

Approved
Click To Hide/Show 1 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Inositol Nicotinate . DB08949
Investigative
Click To Hide/Show 6 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Phenethyl Isothiocyanate Small molecular drug DB12695
Piceatannol Small molecular drug DB08399
Quercetin Small molecular drug DB04216
1-acetyl-2-carboxypiperidine . DB07384
Aurovertin B . DB07394
N1-(2-amino-4-methylpentyl)Octahydro-pyrrolo[12-a] Pyrimidine . DB08629

References

1 Comparison of Different Competitive Proteome Profiling Approaches in Target Identification of Covalent Inhibitors. Chembiochem. 2022 Dec 16;23(24):e202200389. doi: 10.1002/cbic.202200389. Epub 2022 Nov 22.
2 2-Ethynylbenzaldehyde-Based, Lysine-Targeting Irreversible Covalent Inhibitors for Protein Kinases and Nonkinases. J Am Chem Soc. 2023 Feb 12. doi: 10.1021/jacs.2c11595. Online ahead of print.
Mass spectrometry data entry: PXD037665
3 Charting the Chemical Space of Acrylamide-Based Inhibitors of zDHHC20. ACS Med Chem Lett. 2022 Sep 26;13(10):1648-1654. doi: 10.1021/acsmedchemlett.2c00336. eCollection 2022 Oct 13.
4 Cyclopropenone, Cyclopropeniminium Ion, and Cyclopropenethione as Novel Electrophilic Warheads for Potential Target Discovery of Triple-Negative Breast Cancer. J Med Chem. 2023 Feb 23;66(4):2851-2864. doi: 10.1021/acs.jmedchem.2c01889. Epub 2023 Feb 10.
5 Low-Toxicity Sulfonium-Based Probes for Cysteine-Specific Profiling in Live Cells. Anal Chem. 2022 Mar 15;94(10):4366-4372. doi: 10.1021/acs.analchem.1c05129. Epub 2022 Mar 4.
6 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
7 Ynamide Electrophile for the Profiling of Ligandable Carboxyl Residues in Live Cells and the Development of New Covalent Inhibitors. J Med Chem. 2022 Aug 11;65(15):10408-10418. doi: 10.1021/acs.jmedchem.2c00272. Epub 2022 Jul 26.
8 2H-Azirine-Based Reagents for Chemoselective Bioconjugation at Carboxyl Residues Inside Live Cells. J Am Chem Soc. 2020 Apr 1;142(13):6051-6059. doi: 10.1021/jacs.9b12116. Epub 2020 Mar 23.
9 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
10 A chemical proteomics approach for global mapping of functional lysines on cell surface of living cell. Nat Commun. 2024 Apr 8;15(1):2997. doi: 10.1038/s41467-024-47033-w.
Mass spectrometry data entry: PXD042888
11 An Azo Coupling-Based Chemoproteomic Approach to Systematically Profile the Tyrosine Reactivity in the Human Proteome. Anal Chem. 2021 Jul 27;93(29):10334-10342. doi: 10.1021/acs.analchem.1c01935. Epub 2021 Jul 12.
12 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
13 Discovery of a Cell-Active SuTEx Ligand of Prostaglandin Reductase 2. Chembiochem. 2021 Jun 15;22(12):2134-2139. doi: 10.1002/cbic.202000879. Epub 2021 Apr 29.
14 Global profiling of functional histidines in live cells using small-molecule photosensitizer and chemical probe relay labelling. Nat Chem. 2024 Jun 4. doi: 10.1038/s41557-024-01545-6. Online ahead of print.
Mass spectrometry data entry: PXD042377
15 Targeted Proteomic Approaches for Proteome-Wide Characterizations of the AMP-Binding Capacities of Kinases. J Proteome Res. 2022 Aug 5;21(8):2063-2070. doi: 10.1021/acs.jproteome.2c00225. Epub 2022 Jul 12.
16 Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer. J Proteome Res. 2018 Jan 5;17(1):63-75. doi: 10.1021/acs.jproteome.7b00329. Epub 2017 Nov 22.
Mass spectrometry data entry: PXD006095 , PXD006096
17 Tunable Amine-Reactive Electrophiles for Selective Profiling of Lysine. Angew Chem Int Ed Engl. 2022 Jan 26;61(5):e202112107. doi: 10.1002/anie.202112107. Epub 2021 Dec 16.
18 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
19 Solid Phase Synthesis of Fluorosulfate Containing Macrocycles for Chemoproteomic Workflows. bioRxiv [Preprint]. 2023 Feb 18:2023.02.17.529022. doi: 10.1101/2023.02.17.529022.
Mass spectrometry data entry: PXD039931
20 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
21 Oxidant-Induced Bioconjugation for Protein Labeling in Live Cells. ACS Chem Biol. 2023 Jan 20;18(1):112-122. doi: 10.1021/acschembio.2c00740. Epub 2022 Dec 21.
22 Differently Tagged Probes for Protein Profiling of Mitochondria. Chembiochem. 2019 May 2;20(9):1155-1160. doi: 10.1002/cbic.201800735. Epub 2019 Mar 26.
23 Global profiling identifies a stress-responsive tyrosine site on EDC3 regulating biomolecular condensate formation. Cell Chem Biol. 2022 Dec 15;29(12):1709-1720.e7. doi: 10.1016/j.chembiol.2022.11.008. Epub 2022 Dec 6.
Mass spectrometry data entry: PXD038010
24 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
25 Ligand and Target Discovery by Fragment-Based Screening in Human Cells. Cell. 2017 Jan 26;168(3):527-541.e29. doi: 10.1016/j.cell.2016.12.029. Epub 2017 Jan 19.
26 Pharmacological Targeting of Vacuolar H(+)-ATPase via Subunit V1G Combats Multidrug-Resistant Cancer. Cell Chem Biol. 2020 Nov 19;27(11):1359-1370.e8. doi: 10.1016/j.chembiol.2020.06.011. Epub 2020 Jul 9.
27 Evaluation of fully-functionalized diazirine tags for chemical proteomic applications. Chem Sci. 2021 May 7;12(22):7839-7847. doi: 10.1039/d1sc01360b.
Mass spectrometry data entry: PXD025652
28 Small Molecule Interactome Mapping by Photoaffinity Labeling Reveals Binding Site Hotspots for the NSAIDs. J Am Chem Soc. 2018 Mar 28;140(12):4259-4268. doi: 10.1021/jacs.7b11639. Epub 2018 Mar 15.
Mass spectrometry data entry: PXD007094
29 Mapping Protein Targets of Bioactive Small Molecules Using Lipid-Based Chemical Proteomics. ACS Chem Biol. 2017 Oct 20;12(10):2671-2681. doi: 10.1021/acschembio.7b00581. Epub 2017 Sep 20.
Mass spectrometry data entry: PXD007570
30 Proteome profiling reveals potential cellular targets of staurosporine using a clickable cell-permeable probe. Chem Commun (Camb). 2011 Oct 28;47(40):11306-8. doi: 10.1039/c1cc14824a. Epub 2011 Sep 16.