General Information of Target

Target ID LDTP04293
Target Name Transmembrane emp24 domain-containing protein 10 (TMED10)
Gene Name TMED10
Gene ID 10972
Synonyms
TMP21; Transmembrane emp24 domain-containing protein 10; Protein TMED10; 21 kDa transmembrane-trafficking protein; S31I125; S31III125; Tmp-21-I; Transmembrane protein Tmp21; p23; p24 family protein delta-1; p24delta1; p24delta
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MSGLSGPPARRGPFPLALLLLFLLGPRLVLAISFHLPINSRKCLREEIHKDLLVTGAYEI
SDQSGGAGGLRSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQ
LVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNE
STNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE
Target Bioclass
Transporter and channel
Family
EMP24/GP25L family
Subcellular location
Endoplasmic reticulum membrane
Function
Cargo receptor involved in protein vesicular trafficking and quality control in the endoplasmic reticulum (ER) and Golgi. The p24 protein family is a group of transmembrane proteins that bind coat protein complex I/COPI and coat protein complex II/COPII involved in vesicular trafficking between the membranes. Acts at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and involved in vesicle coat formation at the cytoplasmic side. Mainly functions in the early secretory pathway and cycles between the ER, ER-Golgi intermediate compartment (ERGIC) and Golgi, mediating cargo transport through COPI and COPII-coated vesicles. In COPII vesicle-mediated anterograde transport, involved in the transport of GPI-anchored proteins by acting together with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by the GPI inositol-deacylase/PGAP1 and the metallophosphoesterase MPPE1/PGAP5. In COPI vesicle-mediated retrograde transport, involved in the biogenesis of COPI vesicles and vesicle coat recruitment. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent from the modulation of gamma-secretase activity). Involved in the KDELR2-mediated retrograde transport of the toxin A subunit (CTX-A-K63)together with COPI and the COOH terminus of KDELR2. On Golgi membranes, acts as a primary receptor for ARF1-GDP, a GTP-binding protein involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2 which mediates the hydrolysis of ARF1-bound GTP and therefore modulates protein trafficking from the Golgi apparatus. Involved in the exocytic trafficking of G protein-coupled receptors F2LR1/PAR2 (trypsin and tryspin-like enzyme receptor), OPRM1 (opioid receptor) and P2RY4 (UTD and UDP receptor) from the Golgi to the plasma membrane, thus contributing to receptor resensitization. In addition to its cargo receptor activity, may also act as a protein channel after oligomerization, facilitating the post-translational entry of leaderless cytoplasmic cargo into the ERGIC. Involved in the translocation into ERGIC, the vesicle entry and the secretion of leaderless cargos (lacking the secretion signal sequence), including the mature form of interleukin 1/IL-1 family members, the alpha-crystallin B chain HSPB5, the carbohydrate-binding proteins galectin-1/LGALS1 and galectin-3/LGALS3, the microtubule-associated protein Tau/MAPT, and the annexin A1/ANXA1; the translocation process is dependent on cargo protein unfolding and enhanced by chaperones HSP90AB1 and HSP90B1/GRP9. Could also associates with the presenilin-dependent gamma-secretase complex in order to regulate gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40/Abeta40.
Uniprot ID
P49755
Ensemble ID
ENST00000303575.9
HGNC ID
HGNC:16998
ChEMBL ID
CHEMBL4295772

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 21 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
m-APA
 Probe Info 
6.87  LDD0402  [1]
FBPP2
 Probe Info 
2.29  LDD0318  [2]
TH211
 Probe Info 
Y167(8.02)  LDD0260  [3]
C-Sul
 Probe Info 
4.33  LDD0066  [4]
YN-1
 Probe Info 
100.00  LDD0444  [5]
ONAyne
 Probe Info 
N.A.  LDD0273  [6]
OPA-S-S-alkyne
 Probe Info 
K145(4.28)  LDD3494  [7]
Probe 1
 Probe Info 
Y85(7.82); Y135(56.05)  LDD3495  [8]
ATP probe
 Probe Info 
K75(0.00); K87(0.00); K92(0.00); K133(0.00)  LDD0199  [9]
1d-yne
 Probe Info 
N.A.  LDD0358  [10]
IA-alkyne
 Probe Info 
N.A.  LDD0165  [11]
NHS
 Probe Info 
K143(0.00); K145(0.00)  LDD0010  [12]
SF
 Probe Info 
K75(0.00); Y135(0.00)  LDD0028  [13]
STPyne
 Probe Info 
N.A.  LDD0009  [12]
1c-yne
 Probe Info 
N.A.  LDD0228  [10]
Acrolein
 Probe Info 
N.A.  LDD0217  [14]
Crotonaldehyde
 Probe Info 
N.A.  LDD0219  [14]
AOyne
 Probe Info 
5.60  LDD0443  [15]
MPP-AC
 Probe Info 
N.A.  LDD0428  [16]
TER-AC
 Probe Info 
N.A.  LDD0426  [16]
TPP-AC
 Probe Info 
N.A.  LDD0427  [16]
PAL-AfBPP Probe
Click To Hide/Show 42 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C022
 Probe Info 
7.21  LDD1728  [17]
C040
 Probe Info 
13.27  LDD1740  [17]
C055
 Probe Info 
11.96  LDD1752  [17]
C056
 Probe Info 
22.01  LDD1753  [17]
C091
 Probe Info 
13.93  LDD1782  [17]
C092
 Probe Info 
18.90  LDD1783  [17]
C094
 Probe Info 
25.63  LDD1785  [17]
C106
 Probe Info 
16.45  LDD1793  [17]
C112
 Probe Info 
21.11  LDD1799  [17]
C134
 Probe Info 
21.41  LDD1816  [17]
C143
 Probe Info 
12.30  LDD1825  [17]
C161
 Probe Info 
10.34  LDD1841  [17]
C201
 Probe Info 
25.99  LDD1877  [17]
C206
 Probe Info 
17.27  LDD1881  [17]
C218
 Probe Info 
11.47  LDD1892  [17]
C228
 Probe Info 
17.63  LDD1901  [17]
C231
 Probe Info 
15.03  LDD1904  [17]
C235
 Probe Info 
19.70  LDD1908  [17]
C238
 Probe Info 
11.08  LDD1911  [17]
C246
 Probe Info 
12.47  LDD1919  [17]
C289
 Probe Info 
38.32  LDD1959  [17]
C349
 Probe Info 
13.36  LDD2010  [17]
C350
 Probe Info 
27.67  LDD2011  [17]
C362
 Probe Info 
35.51  LDD2023  [17]
C380
 Probe Info 
7.06  LDD2039  [17]
C388
 Probe Info 
60.97  LDD2047  [17]
C390
 Probe Info 
31.34  LDD2049  [17]
C429
 Probe Info 
12.30  LDD2084  [17]
FFF probe11
 Probe Info 
20.00  LDD0471  [18]
FFF probe12
 Probe Info 
9.79  LDD0473  [18]
FFF probe13
 Probe Info 
18.02  LDD0475  [18]
FFF probe14
 Probe Info 
13.82  LDD0477  [18]
FFF probe15
 Probe Info 
5.11  LDD0478  [18]
FFF probe2
 Probe Info 
20.00  LDD0463  [18]
FFF probe3
 Probe Info 
16.54  LDD0464  [18]
FFF probe4
 Probe Info 
16.59  LDD0466  [18]
FFF probe9
 Probe Info 
14.57  LDD0470  [18]
JN0003
 Probe Info 
15.30  LDD0469  [18]
STS-1
 Probe Info 
N.A.  LDD0136  [19]
STS-2
 Probe Info 
N.A.  LDD0138  [19]
DA-2
 Probe Info 
N.A.  LDD0072  [20]
OEA-DA
 Probe Info 
11.48  LDD0046  [21]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0108  Chloroacetamide HeLa H35(0.00); H128(0.00); H82(0.00)  LDD0222  [14]
 LDCM0107  IAA HeLa H35(0.00); H82(0.00); H128(0.00)  LDD0221  [14]
 LDCM0109  NEM HeLa H82(0.00); H35(0.00)  LDD0223  [14]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Presenilin-1 (PSEN1) Peptidase A22A family P49768
Transporter and channel
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Amyloid-beta precursor protein (APP) APP family P05067
Transmembrane emp24 domain-containing protein 2 (TMED2) EMP24/GP25L family Q15363
Junctophilin-3 (JPH3) Junctophilin family Q8WXH2
Other
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Nicastrin (NCSTN) Nicastrin family Q92542
Gamma-secretase subunit PEN-2 (PSENEN) PEN-2 family Q9NZ42

References

1 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
2 Tranylcypromine specificity for monoamine oxidase is limited by promiscuous protein labelling and lysosomal trapping. RSC Chem Biol. 2020 Aug 12;1(4):209-213. doi: 10.1039/d0cb00048e. eCollection 2020 Oct 1.
Mass spectrometry data entry: PXD018580
3 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
4 Low-Toxicity Sulfonium-Based Probes for Cysteine-Specific Profiling in Live Cells. Anal Chem. 2022 Mar 15;94(10):4366-4372. doi: 10.1021/acs.analchem.1c05129. Epub 2022 Mar 4.
5 Ynamide Electrophile for the Profiling of Ligandable Carboxyl Residues in Live Cells and the Development of New Covalent Inhibitors. J Med Chem. 2022 Aug 11;65(15):10408-10418. doi: 10.1021/acs.jmedchem.2c00272. Epub 2022 Jul 26.
6 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
7 A chemical proteomics approach for global mapping of functional lysines on cell surface of living cell. Nat Commun. 2024 Apr 8;15(1):2997. doi: 10.1038/s41467-024-47033-w.
Mass spectrometry data entry: PXD042888
8 An Azo Coupling-Based Chemoproteomic Approach to Systematically Profile the Tyrosine Reactivity in the Human Proteome. Anal Chem. 2021 Jul 27;93(29):10334-10342. doi: 10.1021/acs.analchem.1c01935. Epub 2021 Jul 12.
9 Targeted Proteomic Approaches for Proteome-Wide Characterizations of the AMP-Binding Capacities of Kinases. J Proteome Res. 2022 Aug 5;21(8):2063-2070. doi: 10.1021/acs.jproteome.2c00225. Epub 2022 Jul 12.
10 Tunable Amine-Reactive Electrophiles for Selective Profiling of Lysine. Angew Chem Int Ed Engl. 2022 Jan 26;61(5):e202112107. doi: 10.1002/anie.202112107. Epub 2021 Dec 16.
11 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
12 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
13 Solid Phase Synthesis of Fluorosulfate Containing Macrocycles for Chemoproteomic Workflows. bioRxiv [Preprint]. 2023 Feb 18:2023.02.17.529022. doi: 10.1101/2023.02.17.529022.
Mass spectrometry data entry: PXD039931
14 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
15 Chemoproteomic profiling of targets of lipid-derived electrophiles by bioorthogonal aminooxy probe. Redox Biol. 2017 Aug;12:712-718. doi: 10.1016/j.redox.2017.04.001. Epub 2017 Apr 5.
16 Differently Tagged Probes for Protein Profiling of Mitochondria. Chembiochem. 2019 May 2;20(9):1155-1160. doi: 10.1002/cbic.201800735. Epub 2019 Mar 26.
17 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
18 Ligand and Target Discovery by Fragment-Based Screening in Human Cells. Cell. 2017 Jan 26;168(3):527-541.e29. doi: 10.1016/j.cell.2016.12.029. Epub 2017 Jan 19.
19 Design and synthesis of minimalist terminal alkyne-containing diazirine photo-crosslinkers and their incorporation into kinase inhibitors for cell- and tissue-based proteome profiling. Angew Chem Int Ed Engl. 2013 Aug 12;52(33):8551-6. doi: 10.1002/anie.201300683. Epub 2013 Jun 10.
20 Cell-based proteome profiling of potential dasatinib targets by use of affinity-based probes. J Am Chem Soc. 2012 Feb 15;134(6):3001-14. doi: 10.1021/ja208518u. Epub 2012 Feb 1.
21 Mapping Protein Targets of Bioactive Small Molecules Using Lipid-Based Chemical Proteomics. ACS Chem Biol. 2017 Oct 20;12(10):2671-2681. doi: 10.1021/acschembio.7b00581. Epub 2017 Sep 20.
Mass spectrometry data entry: PXD007570