Details of the Probe

General Information of Probe

Probe ID
LDPC0411
Probe Name
C171
Synonyms
Z4282859626
Probe Type
PAL-AfBPP Probe
Structure
3D MOL 2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 290.4
Lipid-water partition coefficient (xlogp) 2.1
Rotatable Bond Count (rotbonds) 7
Hydrogen Bond Donor Count (hbonddonor) 1
Hydrogen Bond Acceptor Count (hbondacc) 4
Chemical Identifiers
Formula
C16H26N4O
IUPAC Name
3-(3-but-3-ynyldiazirin-3-yl)-N-(1-ethyl-4,4-dimethylpyrrolidin-3-yl)propanamide
Canonical SMILES
CCN1CC(C(C1)(C)C)NC(=O)CCC2(N=N2)CCC#C
InChI
InChI=1S/C16H26N4O/c1-5-7-9-16(18-19-16)10-8-14(21)17-13-11-20(6-2)12-15(13,3)4/h1,13H,6-12H2,2-4H3,(H,17,21)
InChIKey
GQZQKFZKBPDIBN-UHFFFAOYSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

47 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
5'-3' exonuclease PLD3 (PLD3) LDTP08476 7.57  LDD1851 
7-dehydrocholesterol reductase (DHCR7) LDTP13131 8.63  LDD1851 
Acid ceramidase (ASAH1) LDTP05905 8.51  LDD1851 
Acid sphingomyelinase-like phosphodiesterase 3b (SMPDL3B) LDTP09764 6.28  LDD1851 
Alpha-galactosidase A (GLA) LDTP02141 8.82  LDD1851 
Alpha-N-acetylglucosaminidase (NAGLU) LDTP04634 8.57  LDD1851 
Arylsulfatase A (ARSA) LDTP02776 6.50  LDD1851 
Beta-galactosidase (GLB1) LDTP02837 6.02  LDD1851 
Beta-glucuronidase (GUSB) LDTP02260 8.46  LDD1851 
Beta-hexosaminidase subunit alpha (HEXA) LDTP02169 8.11  LDD1851 
Beta-hexosaminidase subunit beta (HEXB) LDTP02216 5.58  LDD1851 
Beta-mannosidase (MANBA) LDTP00282 8.57  LDD1851 
Bis(5'-adenosyl)-triphosphatase ENPP4 (ENPP4) LDTP14305 6.32  LDD1851 
Bis(monoacylglycero)phosphate synthase CLN5 (CLN5) LDTP01241 9.92  LDD1851 
Cathepsin B (CTSB) LDTP02223 13.64  LDD1851 
Chondroitin sulfate N-acetylgalactosaminyltransferase 2 (CSGALNACT2) LDTP08933 5.10  LDD1851 
Delta(14)-sterol reductase LBR (LBR) LDTP06200 8.11  LDD1851 
Delta(24)-sterol reductase (DHCR24) LDTP06375 27.67  LDD1851 
Deoxyribonuclease-2-alpha (DNASE2) LDTP00185 12.82  LDD1851 
Di-N-acetylchitobiase (CTBS) LDTP14801 8.94  LDD1851 
Dipeptidyl peptidase 1 (CTSC) LDTP04572 9.78  LDD1851 
Endothelin-converting enzyme 1 (ECE1) LDTP04008 6.06  LDD1851 
Gamma-glutamyl hydrolase (GGH) LDTP09886 6.59  LDD1851 
Histone-lysine N-methyltransferase SMYD3 (SMYD3) LDTP12020 6.82  LDD1851 
Legumain (LGMN) LDTP10888 9.45  LDD1851 
Leucyl-cystinyl aminopeptidase (LNPEP) LDTP13358 8.82  LDD1851 
Lysosomal acid phosphatase (ACP2) LDTP02539 8.88  LDD1851 
Lysosomal alpha-glucosidase (GAA) LDTP02486 8.06  LDD1851 
Lysosomal alpha-mannosidase (MAN2B1) LDTP00338 7.41  LDD1851 
Lysosomal Pro-X carboxypeptidase (PRCP) LDTP04004 8.82  LDD1851 
Lysosomal protective protein (CTSA) LDTP02505 6.77  LDD1851 
Lysosomal thioesterase PPT2 (PPT2) LDTP13620 18.38  LDD1851 
N-acetylgalactosamine-6-sulfatase (GALNS) LDTP03683 5.24  LDD1851 
N-acetylglucosamine-6-sulfatase (GNS) LDTP02799 18.00  LDD1851 
Palmitoyl-protein thioesterase 1 (PPT1) LDTP04388 8.34  LDD1851 
Peptidyl-glycine alpha-amidating monooxygenase (PAM) LDTP02976 6.92  LDD1851 
Phospholipase A2 group XV (PLA2G15) LDTP09088 7.26  LDD1851 
Plasma alpha-L-fucosidase (FUCA2) LDTP11215 7.57  LDD1851 
Probable serine carboxypeptidase CPVL (CPVL) LDTP15988 7.26  LDD1851 
Procathepsin L (CTSL) LDTP02217 15.56  LDD1851 
Putative phospholipase B-like 2 (PLBD2) LDTP09256 12.47  LDD1851 
Retinoid-inducible serine carboxypeptidase (SCPEP1) LDTP16032 16.34  LDD1851 
Ribonuclease T2 (RNASET2) LDTP00316 10.56  LDD1851 
Sialate O-acetylesterase (SIAE) LDTP12135 8.57  LDD1851 
Sphingomyelin phosphodiesterase (SMPD1) LDTP02896 7.16  LDD1851 
Tripeptidyl-peptidase 1 (TPP1) LDTP00428 25.99  LDD1851 
Uracil-DNA glycosylase (UNG) LDTP02643 5.21  LDD1851 
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⏷ Show the Full List of 47 Enzyme
22 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Amyloid-beta precursor protein (APP) LDTP02071 11.71  LDD1851 
Cation-independent mannose-6-phosphate receptor (IGF2R) LDTP02586 5.98  LDD1851 
Integral membrane protein 2B (ITM2B) LDTP13833 6.45  LDD1851 
Low-density lipoprotein receptor (LDLR) LDTP01829 6.32  LDD1851 
Low-density lipoprotein receptor-related protein 2 (LRP2) LDTP05218 8.82  LDD1851 
Lysosome membrane protein 2 (SCARB2) LDTP06034 9.92  LDD1851 
Lysosome-associated membrane glycoprotein 1 (LAMP1) LDTP02562 6.06  LDD1851 
Lysosome-associated membrane glycoprotein 2 (LAMP2) LDTP02655 11.08  LDD1851 
NPC intracellular cholesterol transporter 2 (NPC2) LDTP04940 17.63  LDD1851 
Osteopetrosis-associated transmembrane protein 1 (OSTM1) LDTP08327 7.26  LDD1851 
Podocalyxin (PODXL) LDTP00321 7.06  LDD1851 
Prosaposin (PSAP) LDTP02215 13.93  LDD1851 
Protein tweety homolog 3 (TTYH3) LDTP11615 10.06  LDD1851 
Proton-activated chloride channel (PACC1) LDTP12042 14.83  LDD1851 
Sigma intracellular receptor 2 (TMEM97) LDTP06945 5.66  LDD1851 
Sigma non-opioid intracellular receptor 1 (SIGMAR1) LDTP10958 6.59  LDD1851 
Sodium-dependent neutral amino acid transporter B(0)AT2 (SLC6A15) LDTP11826 5.13  LDD1851 
Solute carrier family 35 member F2 (SLC35F2) LDTP17641 9.06  LDD1851 
Sortilin-related receptor (SORL1) LDTP09838 8.69  LDD1851 
Tetraspanin-3 (TSPAN3) LDTP16813 7.67  LDD1851 
Transferrin receptor protein 1 (TFRC) LDTP01969 5.50  LDD1851 
Transmembrane protein 59 (TMEM59) LDTP11406 16.80  LDD1851 
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⏷ Show the Full List of 22 Transporter and channel
1 Immunoglobulin Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
IgG receptor FcRn large subunit p51 (FCGRT) LDTP04720 7.89  LDD1851 
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1 Cytokine and receptor Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Interferon gamma receptor 1 (IFNGR1) LDTP02775 8.51  LDD1851 
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25 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Amyloid beta precursor like protein 2 (APLP2) LDTP05491 9.32  LDD1851 
Brain-specific angiogenesis inhibitor 1-associated protein 2 (BAIAP2) LDTP13755 5.39  LDD1851 
C-type mannose receptor 2 (MRC2) LDTP13114 6.36  LDD1851 
Calsyntenin-3 (CLSTN3) LDTP11096 8.00  LDD1851 
CD109 antigen (CD109) LDTP07760 5.62  LDD1851 
CD320 antigen (CD320) LDTP12352 7.89  LDD1851 
Collectin-12 (COLEC12) LDTP07031 11.96  LDD1851 
Desmocollin-3 (DSC3) LDTP06154 5.17  LDD1851 
Dyslexia-associated protein KIAA0319-like protein (KIAA0319L) LDTP08689 5.90  LDD1851 
Endothelial protein C receptor (PROCR) LDTP13669 5.35  LDD1851 
Galectin-3-binding protein (LGALS3BP) LDTP05558 9.25  LDD1851 
Ganglioside GM2 activator (GM2A) LDTP02927 9.58  LDD1851 
Golgi apparatus protein 1 (GLG1) LDTP09920 5.31  LDD1851 
Keratinocyte-associated transmembrane protein 2 (KCT2) LDTP19780 12.38  LDD1851 
Mammalian ependymin-related protein 1 (EPDR1) LDTP13606 18.51  LDD1851 
Nidogen-1 (NID1) LDTP02728 5.70  LDD1851 
Protein CREG1 (CREG1) LDTP01279 19.29  LDD1851 
Protein CutA (CUTA) LDTP01075 4.96  LDD1851 
Protein unc-119 homolog B (UNC119B) LDTP00105 13.55  LDD1851 
Seizure 6-like protein 2 (SEZ6L2) LDTP07703 8.82  LDD1851 
Synaptic vesicle glycoprotein 2A (SV2A) LDTP07934 5.70  LDD1851 
Tetraspanin-6 (TSPAN6) LDTP14458 6.36  LDD1851 
Trans-Golgi network integral membrane protein 2 (TGOLN2) LDTP00779 5.06  LDD1851 
UPF0606 protein KIAA1549 (KIAA1549) LDTP12256 7.26  LDD1851 
Very low-density lipoprotein receptor (VLDLR) LDTP05215 8.88  LDD1851 
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⏷ Show the Full List of 25 Other

Full Information of The Labelling Profiles of This Probe

Quantification: AfBPP Probe vs Negative Probe
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
Probe:50uM; negative probe:50uM
Quantitative Method
TMT
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Note
Negative probe:C#CCCC1(CCC(NC)=O)N=N1
Interaction Atlas ID
 LDD1851 
Download The Altas

References

1 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587