Details of the Probe

General Information of Probe

Probe ID
LDPC0606
Probe Name
C387
Synonyms
Z4282860527
Probe Type
PAL-AfBPP Probe
Structure
3D MOL 2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 315.4
Lipid-water partition coefficient (xlogp) 2
Rotatable Bond Count (rotbonds) 5
Hydrogen Bond Donor Count (hbonddonor) 0
Hydrogen Bond Acceptor Count (hbondacc) 4
Chemical Identifiers
Formula
C18H25N3O2
IUPAC Name
3-(3-but-3-ynyldiazirin-3-yl)-1-(5-oxa-11-azadispiro[3.1.36.34]dodecan-11-yl)propan-1-one
Canonical SMILES
C#CCCC1(N=N1)CCC(=O)N2CC3(CCC3)OC4(C2)CCC4
InChI
InChI=1S/C18H25N3O2/c1-2-3-11-18(19-20-18)12-6-15(22)21-13-16(7-4-8-16)23-17(14-21)9-5-10-17/h1H,3-14H2
InChIKey
MWYCPSDHWGYLRZ-UHFFFAOYSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

37 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
3-ketodihydrosphingosine reductase (KDSR) LDTP05476 5.66  LDD2046 
5'-3' exonuclease PLD3 (PLD3) LDTP08476 9.58  LDD2046 
Acid ceramidase (ASAH1) LDTP05905 7.01  LDD2046 
Bifunctional epoxide hydrolase 2 (EPHX2) LDTP03692 12.21  LDD2046 
Ceramide synthase 1 (CERS1) LDTP03394 6.87  LDD2046 
Delta(24)-sterol reductase (DHCR24) LDTP06375 7.57  LDD2046 
Dihydrofolate reductase (DHFR) LDTP01769 21.11  LDD2046 
Dynamin-1-like protein (DNM1L) LDTP00273 5.98  LDD2046 
Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial (ETFDH) LDTP06511 8.75  LDD2046 
Epoxide hydrolase 1 (EPHX1) LDTP02175 5.43  LDD2046 
FAD-dependent oxidoreductase domain-containing protein 1 (FOXRED1) LDTP10188 5.13  LDD2046 
Heme oxygenase 1 (HMOX1) LDTP02359 8.51  LDD2046 
Heme oxygenase 2 (HMOX2) LDTP03540 5.43  LDD2046 
Lipid droplet-associated hydrolase (LDAH) LDTP16007 25.28  LDD2046 
Lysosomal Pro-X carboxypeptidase (PRCP) LDTP04004 8.75  LDD2046 
Lysosomal protective protein (CTSA) LDTP02505 10.06  LDD2046 
Lysosomal thioesterase PPT2 (PPT2) LDTP13620 5.35  LDD2046 
Methylsterol monooxygenase 1 (MSMO1) LDTP06477 7.06  LDD2046 
NADH-ubiquinone oxidoreductase chain 1 (MT-ND1) LDTP01982 6.19  LDD2046 
Obg-like ATPase 1 (OLA1) LDTP12610 6.96  LDD2046 
Palmitoyl-protein thioesterase 1 (PPT1) LDTP04388 8.46  LDD2046 
Palmitoyl-protein thioesterase ABHD10, mitochondrial (ABHD10) LDTP12628 17.88  LDD2046 
Prenylcysteine oxidase 1 (PCYOX1) LDTP13282 11.96  LDD2046 
Prenylcysteine oxidase-like (PCYOX1L) LDTP15480 5.10  LDD2046 
Probable serine carboxypeptidase CPVL (CPVL) LDTP15988 5.21  LDD2046 
Proteasome subunit beta type-1 (PSMB1) LDTP03060 9.45  LDD2046 
Proteasome subunit beta type-2 (PSMB2) LDTP04285 10.13  LDD2046 
Proteasome subunit beta type-3 (PSMB3) LDTP04284 5.70  LDD2046 
Proteasome subunit beta type-4 (PSMB4) LDTP03417 6.23  LDD2046 
Proteasome subunit beta type-6 (PSMB6) LDTP03418 8.57  LDD2046 
Protein O-GlcNAcase (OGA) LDTP00988 5.31  LDD2046 
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (PDE6D) LDTP00907 15.24  LDD2046 
Retinoid-inducible serine carboxypeptidase (SCPEP1) LDTP16032 9.58  LDD2046 
S-methyl-5'-thioadenosine phosphorylase (MTAP) LDTP05758 27.47  LDD2046 
Sphingomyelin phosphodiesterase (SMPD1) LDTP02896 8.00  LDD2046 
TLC domain-containing protein 1 (TLCD1) LDTP10182 11.39  LDD2046 
Tripeptidyl-peptidase 1 (TPP1) LDTP00428 9.00  LDD2046 
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⏷ Show the Full List of 37 Enzyme
16 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
ER lumen protein-retaining receptor 1 (KDELR1) LDTP03277 13.45  LDD2046 
Gasdermin-E (GSDME) LDTP00970 5.03  LDD2046 
Importin-8 (IPO8) LDTP00630 8.06  LDD2046 
Lysosome membrane protein 2 (SCARB2) LDTP06034 6.59  LDD2046 
Major facilitator superfamily domain-containing protein 3 (MFSD3) LDTP18153 6.50  LDD2046 
Mitochondrial carnitine/acylcarnitine carrier protein (SLC25A20) LDTP00865 5.28  LDD2046 
Mitochondrial import inner membrane translocase subunit Tim17-A (TIMM17A) LDTP10913 10.41  LDD2046 
Mitochondrial import inner membrane translocase subunit Tim17-B (TIMM17B) LDTP01059 10.78  LDD2046 
Prosaposin (PSAP) LDTP02215 4.96  LDD2046 
Protein GPR107 (GPR107) LDTP07236 7.67  LDD2046 
Scavenger receptor class B member 1 (SCARB1) LDTP09547 4.96  LDD2046 
Solute carrier family 25 member 44 (SLC25A44) LDTP15733 5.50  LDD2046 
Translocating chain-associated membrane protein 1 (TRAM1) LDTP06426 5.17  LDD2046 
Transmembrane protein 199 (TMEM199) LDTP08881 7.21  LDD2046 
Voltage-dependent anion-selective channel protein 1 (VDAC1) LDTP03132 14.22  LDD2046 
Voltage-dependent anion-selective channel protein 2 (VDAC2) LDTP04071 11.55  LDD2046 
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⏷ Show the Full List of 16 Transporter and channel
1 Immunoglobulin Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
IgG receptor FcRn large subunit p51 (FCGRT) LDTP04720 4.99  LDD2046 
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21 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Ankyrin repeat and LEM domain-containing protein 2 (ANKLE2) LDTP08364 5.10  LDD2046 
Apolipoprotein L2 (APOL2) LDTP11076 6.41  LDD2046 
Brain-specific angiogenesis inhibitor 1-associated protein 2 (BAIAP2) LDTP13755 5.78  LDD2046 
Capping protein-inhibiting regulator of actin dynamics (CRACD) LDTP07839 6.28  LDD2046 
CYFIP-related Rac1 interactor B (CYRIB) LDTP12642 5.03  LDD2046 
Diablo IAP-binding mitochondrial protein (DIABLO) LDTP12468 6.32  LDD2046 
Endoplasmic reticulum-Golgi intermediate compartment protein 3 (ERGIC3) LDTP13828 6.96  LDD2046 
Eukaryotic translation initiation factor 5 (EIF5) LDTP04652 5.46  LDD2046 
Large proline-rich protein BAG6 (BAG6) LDTP04094 9.71  LDD2046 
Membralin (TMEM259) LDTP14939 5.28  LDD2046 
Microtubule nucleation factor SSNA1 (SSNA1) LDTP00871 8.75  LDD2046 
Mitochondrial import receptor subunit TOM22 homolog (TOMM22) LDTP12565 8.34  LDD2046 
Neuferricin (CYB5D2) LDTP15623 8.00  LDD2046 
Nucleobindin-1 (NUCB1) LDTP05375 6.77  LDD2046 
Nucleobindin-2 (NUCB2) LDTP05160 18.77  LDD2046 
p53 and DNA damage-regulated protein 1 (PDRG1) LDTP16099 38.59  LDD2046 
RAD50-interacting protein 1 (RINT1) LDTP07476 10.85  LDD2046 
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L (TAF6L) LDTP14263 5.54  LDD2046 
Tetraspanin-6 (TSPAN6) LDTP14458 5.35  LDD2046 
Ubiquinol-cytochrome c reductase complex assembly factor 5 (UQCC5) LDTP15634 9.71  LDD2046 
Ubiquinol-cytochrome c reductase complex assembly factor 6 (UQCC6) LDTP15067 8.22  LDD2046 
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⏷ Show the Full List of 21 Other

Full Information of The Labelling Profiles of This Probe

Quantification: AfBPP Probe vs Negative Probe
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
Probe:50uM; negative probe:50uM
Quantitative Method
TMT
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Note
Negative probe:C#CCCC1(CCC(NC)=O)N=N1
Interaction Atlas ID
 LDD2046 
Download The Altas

References

1 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587