Details of the Probe

General Information of Probe

Probe ID
LDPC0527
Probe Name
C297
Synonyms
Z4225931125
Probe Type
PAL-AfBPP Probe
Structure
3D MOL 2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 321.4
Lipid-water partition coefficient (xlogp) 2
Rotatable Bond Count (rotbonds) 8
Hydrogen Bond Donor Count (hbonddonor) 1
Hydrogen Bond Acceptor Count (hbondacc) 4
Chemical Identifiers
Formula
C18H19N5O
IUPAC Name
N-[2-(3-but-3-ynyldiazirin-3-yl)ethyl]-1-(pyridin-3-ylmethyl)pyrrole-2-carboxamide
Canonical SMILES
C#CCCC1(N=N1)CCNC(=O)C2=CC=CN2CC3=CN=CC=C3
InChI
InChI=1S/C18H19N5O/c1-2-3-8-18(21-22-18)9-11-20-17(24)16-7-5-12-23(16)14-15-6-4-10-19-13-15/h1,4-7,10,12-13H,3,8-9,11,14H2,(H,20,24)
InChIKey
CKRXAZGTCGLTPG-UHFFFAOYSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

70 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
5'-3' exonuclease PLD3 (PLD3) LDTP08476 8.22  LDD1967 
5'-3' exonuclease PLD3 (PLD3) LDTP08476 8.22  LDD1967 
Adenosine deaminase (ADA) LDTP01803 14.32  LDD1967 
Adenosine deaminase (ADA) LDTP01803 14.32  LDD1967 
ATP-dependent translocase ABCB1 (ABCB1) LDTP02254 5.28  LDD1967 
ATP-dependent translocase ABCB1 (ABCB1) LDTP02254 5.28  LDD1967 
CAAX prenyl protease 1 homolog (ZMPSTE24) LDTP01328 5.86  LDD1967 
CAAX prenyl protease 1 homolog (ZMPSTE24) LDTP01328 5.86  LDD1967 
Carnitine O-palmitoyltransferase 2, mitochondrial (CPT2) LDTP03257 7.89  LDD1967 
Carnitine O-palmitoyltransferase 2, mitochondrial (CPT2) LDTP03257 7.89  LDD1967 
Delta(24)-sterol reductase (DHCR24) LDTP06375 14.83  LDD1967 
Delta(24)-sterol reductase (DHCR24) LDTP06375 14.83  LDD1967 
Dihydrofolate reductase (DHFR) LDTP01769 16.34  LDD1967 
Dihydrofolate reductase (DHFR) LDTP01769 16.34  LDD1967 
Dolichyldiphosphatase 1 (DOLPP1) LDTP15328 6.92  LDD1967 
Dolichyldiphosphatase 1 (DOLPP1) LDTP15328 6.92  LDD1967 
E3 ubiquitin-protein ligase RNF14 (RNF14) LDTP13154 5.46  LDD1967 
E3 ubiquitin-protein ligase RNF14 (RNF14) LDTP13154 5.46  LDD1967 
Endoplasmic reticulum transmembrane helix translocase (ATP13A1) LDTP12279 7.21  LDD1967 
Endoplasmic reticulum transmembrane helix translocase (ATP13A1) LDTP12279 7.21  LDD1967 
Endothelin-converting enzyme 1 (ECE1) LDTP04008 5.17  LDD1967 
Endothelin-converting enzyme 1 (ECE1) LDTP04008 5.17  LDD1967 
Ethanolamine kinase 1 (ETNK1) LDTP12197 7.67  LDD1967 
Ethanolamine kinase 1 (ETNK1) LDTP12197 7.67  LDD1967 
Heme oxygenase 2 (HMOX2) LDTP03540 4.99  LDD1967 
Heme oxygenase 2 (HMOX2) LDTP03540 4.99  LDD1967 
Lanosterol 14-alpha demethylase (CYP51A1) LDTP06648 10.34  LDD1967 
Lanosterol 14-alpha demethylase (CYP51A1) LDTP06648 10.34  LDD1967 
Lipid droplet-associated hydrolase (LDAH) LDTP16007 6.59  LDD1967 
Lipid droplet-associated hydrolase (LDAH) LDTP16007 6.59  LDD1967 
Lysophosphatidic acid phosphatase type 6 (ACP6) LDTP12363 10.06  LDD1967 
Lysophosphatidic acid phosphatase type 6 (ACP6) LDTP12363 10.06  LDD1967 
Lysosomal Pro-X carboxypeptidase (PRCP) LDTP04004 7.52  LDD1967 
Lysosomal Pro-X carboxypeptidase (PRCP) LDTP04004 7.52  LDD1967 
N-terminal Xaa-Pro-Lys N-methyltransferase 1 (NTMT1) LDTP11273 9.32  LDD1967 
N-terminal Xaa-Pro-Lys N-methyltransferase 1 (NTMT1) LDTP11273 9.32  LDD1967 
NAD(P) transhydrogenase, mitochondrial (NNT) LDTP05862 5.66  LDD1967 
NAD(P) transhydrogenase, mitochondrial (NNT) LDTP05862 5.66  LDD1967 
NAD-capped RNA hydrolase NUDT12 (NUDT12) LDTP11081 8.94  LDD1967 
NAD-capped RNA hydrolase NUDT12 (NUDT12) LDTP11081 8.94  LDD1967 
NADH-ubiquinone oxidoreductase chain 1 (MT-ND1) LDTP01982 6.06  LDD1967 
NADH-ubiquinone oxidoreductase chain 1 (MT-ND1) LDTP01982 6.06  LDD1967 
Palmitoyl-protein thioesterase ABHD10, mitochondrial (ABHD10) LDTP12628 7.36  LDD1967 
Palmitoyl-protein thioesterase ABHD10, mitochondrial (ABHD10) LDTP12628 7.36  LDD1967 
Peptidyl-prolyl cis-trans isomerase FKBP1A (FKBP1A) LDTP05029 12.04  LDD1967 
Peptidyl-prolyl cis-trans isomerase FKBP1A (FKBP1A) LDTP05029 12.04  LDD1967 
Peptidyl-prolyl cis-trans isomerase FKBP2 (FKBP2) LDTP03374 7.41  LDD1967 
Peptidyl-prolyl cis-trans isomerase FKBP2 (FKBP2) LDTP03374 7.41  LDD1967 
Phospholipase A2 group XV (PLA2G15) LDTP09088 11.16  LDD1967 
Phospholipase A2 group XV (PLA2G15) LDTP09088 11.16  LDD1967 
Prenylcysteine oxidase 1 (PCYOX1) LDTP13282 11.88  LDD1967 
Prenylcysteine oxidase 1 (PCYOX1) LDTP13282 11.88  LDD1967 
Probable serine carboxypeptidase CPVL (CPVL) LDTP15988 16.45  LDD1967 
Probable serine carboxypeptidase CPVL (CPVL) LDTP15988 16.45  LDD1967 
Prolyl endopeptidase-like (PREPL) LDTP06849 5.62  LDD1967 
Prolyl endopeptidase-like (PREPL) LDTP06849 5.62  LDD1967 
Protein O-GlcNAcase (OGA) LDTP00988 6.45  LDD1967 
Protein O-GlcNAcase (OGA) LDTP00988 6.45  LDD1967 
Protein-S-isoprenylcysteine O-methyltransferase (ICMT) LDTP01039 21.41  LDD1967 
Protein-S-isoprenylcysteine O-methyltransferase (ICMT) LDTP01039 21.41  LDD1967 
Puromycin-sensitive aminopeptidase (NPEPPS) LDTP04712 6.59  LDD1967 
Puromycin-sensitive aminopeptidase (NPEPPS) LDTP04712 6.59  LDD1967 
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (PDE6D) LDTP00907 9.25  LDD1967 
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta (PDE6D) LDTP00907 9.25  LDD1967 
S-methyl-5'-thioadenosine phosphorylase (MTAP) LDTP05758 18.64  LDD1967 
S-methyl-5'-thioadenosine phosphorylase (MTAP) LDTP05758 18.64  LDD1967 
Saccharopine dehydrogenase-like oxidoreductase (SCCPDH) LDTP15484 13.00  LDD1967 
Saccharopine dehydrogenase-like oxidoreductase (SCCPDH) LDTP15484 13.00  LDD1967 
Squalene synthase (FDFT1) LDTP03842 6.19  LDD1967 
Squalene synthase (FDFT1) LDTP03842 6.19  LDD1967 
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⏷ Show the Full List of 70 Enzyme
44 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Acetyl-coenzyme A transporter 1 (SLC33A1) LDTP00262 9.99  LDD1967 
Acetyl-coenzyme A transporter 1 (SLC33A1) LDTP00262 9.99  LDD1967 
ATP synthase subunit a (MT-ATP6) LDTP01804 16.22  LDD1967 
ATP synthase subunit a (MT-ATP6) LDTP01804 16.22  LDD1967 
ER lumen protein-retaining receptor 1 (KDELR1) LDTP03277 20.39  LDD1967 
ER lumen protein-retaining receptor 1 (KDELR1) LDTP03277 20.39  LDD1967 
Lysosome membrane protein 2 (SCARB2) LDTP06034 6.23  LDD1967 
Lysosome membrane protein 2 (SCARB2) LDTP06034 6.23  LDD1967 
MFS-type transporter SLC18B1 (SLC18B1) LDTP07462 5.58  LDD1967 
MFS-type transporter SLC18B1 (SLC18B1) LDTP07462 5.58  LDD1967 
Mitochondrial carnitine/acylcarnitine carrier protein (SLC25A20) LDTP00865 6.87  LDD1967 
Mitochondrial carnitine/acylcarnitine carrier protein (SLC25A20) LDTP00865 6.87  LDD1967 
Mitochondrial import inner membrane translocase subunit Tim17-A (TIMM17A) LDTP10913 8.69  LDD1967 
Mitochondrial import inner membrane translocase subunit Tim17-A (TIMM17A) LDTP10913 8.69  LDD1967 
Mitochondrial import inner membrane translocase subunit Tim17-B (TIMM17B) LDTP01059 12.82  LDD1967 
Mitochondrial import inner membrane translocase subunit Tim17-B (TIMM17B) LDTP01059 12.82  LDD1967 
Mitochondrial import inner membrane translocase subunit Tim22 (TIMM22) LDTP14099 4.92  LDD1967 
Mitochondrial import inner membrane translocase subunit Tim22 (TIMM22) LDTP14099 4.92  LDD1967 
Mitochondrial S-adenosylmethionine carrier protein (SLC25A26) LDTP07885 7.73  LDD1967 
Mitochondrial S-adenosylmethionine carrier protein (SLC25A26) LDTP07885 7.73  LDD1967 
Monocarboxylate transporter 1 (SLC16A1) LDTP04592 8.88  LDD1967 
Monocarboxylate transporter 1 (SLC16A1) LDTP04592 8.88  LDD1967 
Mpv17-like protein 2 (MPV17L2) LDTP14952 8.00  LDD1967 
Mpv17-like protein 2 (MPV17L2) LDTP14952 8.00  LDD1967 
Peroxisomal membrane protein 2 (PXMP2) LDTP16069 20.39  LDD1967 
Peroxisomal membrane protein 2 (PXMP2) LDTP16069 20.39  LDD1967 
Protein GPR107 (GPR107) LDTP07236 8.94  LDD1967 
Protein GPR107 (GPR107) LDTP07236 8.94  LDD1967 
Protein wntless homolog (WLS) LDTP07156 7.52  LDD1967 
Protein wntless homolog (WLS) LDTP07156 7.52  LDD1967 
Scavenger receptor class B member 1 (SCARB1) LDTP09547 7.16  LDD1967 
Scavenger receptor class B member 1 (SCARB1) LDTP09547 7.16  LDD1967 
Sigma intracellular receptor 2 (TMEM97) LDTP06945 5.10  LDD1967 
Sigma intracellular receptor 2 (TMEM97) LDTP06945 5.10  LDD1967 
Sigma non-opioid intracellular receptor 1 (SIGMAR1) LDTP10958 5.03  LDD1967 
Sigma non-opioid intracellular receptor 1 (SIGMAR1) LDTP10958 5.03  LDD1967 
Signal recognition particle subunit SRP68 (SRP68) LDTP13262 9.92  LDD1967 
Signal recognition particle subunit SRP68 (SRP68) LDTP13262 9.92  LDD1967 
Solute carrier family 25 member 32 (SLC25A32) LDTP11813 6.63  LDD1967 
Solute carrier family 25 member 32 (SLC25A32) LDTP11813 6.63  LDD1967 
Voltage-dependent anion-selective channel protein 1 (VDAC1) LDTP03132 11.88  LDD1967 
Voltage-dependent anion-selective channel protein 1 (VDAC1) LDTP03132 11.88  LDD1967 
Voltage-dependent anion-selective channel protein 2 (VDAC2) LDTP04071 11.63  LDD1967 
Voltage-dependent anion-selective channel protein 2 (VDAC2) LDTP04071 11.63  LDD1967 
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⏷ Show the Full List of 44 Transporter and channel
36 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Ankyrin repeat and LEM domain-containing protein 2 (ANKLE2) LDTP08364 6.50  LDD1967 
Ankyrin repeat and LEM domain-containing protein 2 (ANKLE2) LDTP08364 6.50  LDD1967 
Apolipoprotein L2 (APOL2) LDTP11076 6.87  LDD1967 
Apolipoprotein L2 (APOL2) LDTP11076 6.87  LDD1967 
EF-hand calcium-binding domain-containing protein 14 (EFCAB14) LDTP19021 5.78  LDD1967 
EF-hand calcium-binding domain-containing protein 14 (EFCAB14) LDTP19021 5.78  LDD1967 
ER lumen protein-retaining receptor 2 (KDELR2) LDTP03678 9.51  LDD1967 
ER lumen protein-retaining receptor 2 (KDELR2) LDTP03678 9.51  LDD1967 
Eukaryotic translation initiation factor 5 (EIF5) LDTP04652 6.06  LDD1967 
Eukaryotic translation initiation factor 5 (EIF5) LDTP04652 6.06  LDD1967 
Hepatoma-derived growth factor (HDGF) LDTP04483 6.45  LDD1967 
Hepatoma-derived growth factor (HDGF) LDTP04483 6.45  LDD1967 
Hepatoma-derived growth factor-related protein 2 (HDGFL2) LDTP08081 11.47  LDD1967 
Hepatoma-derived growth factor-related protein 2 (HDGFL2) LDTP08081 11.47  LDD1967 
Large proline-rich protein BAG6 (BAG6) LDTP04094 11.55  LDD1967 
Large proline-rich protein BAG6 (BAG6) LDTP04094 11.55  LDD1967 
Mdm2-binding protein (MTBP) LDTP15714 6.02  LDD1967 
Mdm2-binding protein (MTBP) LDTP15714 6.02  LDD1967 
Microtubule nucleation factor SSNA1 (SSNA1) LDTP00871 7.11  LDD1967 
Microtubule nucleation factor SSNA1 (SSNA1) LDTP00871 7.11  LDD1967 
Nucleobindin-2 (NUCB2) LDTP05160 4.92  LDD1967 
Nucleobindin-2 (NUCB2) LDTP05160 4.92  LDD1967 
Polyadenylate-binding protein-interacting protein 2 (PAIP2) LDTP11044 5.98  LDD1967 
Polyadenylate-binding protein-interacting protein 2 (PAIP2) LDTP11044 5.98  LDD1967 
Protein CEBPZOS (CEBPZOS) LDTP18883 5.13  LDD1967 
Protein CEBPZOS (CEBPZOS) LDTP18883 5.13  LDD1967 
Protein unc-119 homolog B (UNC119B) LDTP00105 7.52  LDD1967 
Protein unc-119 homolog B (UNC119B) LDTP00105 7.52  LDD1967 
Rap guanine nucleotide exchange factor 2 (RAPGEF2) LDTP14058 7.94  LDD1967 
Rap guanine nucleotide exchange factor 2 (RAPGEF2) LDTP14058 7.94  LDD1967 
Retinol-binding protein 1 (RBP1) LDTP02345 5.54  LDD1967 
Retinol-binding protein 1 (RBP1) LDTP02345 5.54  LDD1967 
Synaptic vesicle glycoprotein 2A (SV2A) LDTP07934 5.31  LDD1967 
Synaptic vesicle glycoprotein 2A (SV2A) LDTP07934 5.31  LDD1967 
Tetraspanin-6 (TSPAN6) LDTP14458 8.63  LDD1967 
Tetraspanin-6 (TSPAN6) LDTP14458 8.63  LDD1967 
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⏷ Show the Full List of 36 Other

Full Information of The Labelling Profiles of This Probe

Quantification: AfBPP Probe vs Negative Probe
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
Probe:50uM; negative probe:50uM
Quantitative Method
TMT
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Note
Negative probe:C#CCCC1(CCC(NC)=O)N=N1
Interaction Atlas ID
 LDD1967 
Download The Altas

References

1 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587