General Information of Target

Target ID LDTP04114
Target Name E3 ubiquitin-protein ligase NEDD4 (NEDD4)
Gene Name NEDD4
Gene ID 4734
Synonyms
KIAA0093; NEDD4-1; RPF1; E3 ubiquitin-protein ligase NEDD4; EC 2.3.2.26; Cell proliferation-inducing gene 53 protein; HECT-type E3 ubiquitin transferase NEDD4; Neural precursor cell expressed developmentally down-regulated protein 4; NEDD-4
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Sequence
MAQSLRLHFAARRSNTYPLSETSGDDLDSHVHMCFKRPTRISTSNVVQMKLTPRQTALAP
LIKENVQSQERSSVPSSENVNKKSSCLQISLQPTRYSGYLQSSNVLADSDDASFTCILKD
GIYSSAVVDNELNAVNDGHLVSSPAICSGSLSNFSTSDNGSYSSNGSDFGSCASITSGGS
YTNSVISDSSSYTFPPSDDTFLGGNLPSDSTSNRSVPNRNTTPCEIFSRSTSTDPFVQDD
LEHGLEIMKLPVSRNTKIPLKRYSSLVIFPRSPSTTRPTSPTSLCTLLSKGSYQTSHQFI
ISPSEIAHNEDGTSAKGFLSTAVNGLRLSKTICTPGEVRDIRPLHRKGSLQKKIVLSNNT
PRQTVCEKSSEGYSCVSVHFTQRKAATLDCETTNGDCKPEMSEIKLNSDSEYIKLMHRTS
ACLPSSQNVDCQININGELERPHSQMNKNHGILRRSISLGGAYPNISCLSSLKHNCSKGG
PSQLLIKFASGNEGKVDNLSRDSNRDCTNELSNSCKTRDDFLGQVDVPLYPLPTENPRLE
RPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKTSGSEDDNAEQAEELEPGWVVLDQPDAA
CHLQQQQEPSPLPPGWEERQDILGRTYYVNHESRRTQWKRPTPQDNLTDAENGNIQLQAQ
RAFTTRRQISEETESVDNRESSENWEIIREDEATMYSNQAFPSPPPSSNLDVPTHLAEEL
NARLTIFGNSAVSQPASSSNHSSRRGSLQAYTFEEQPTLPVLLPTSSGLPPGWEEKQDER
GRSYYVDHNSRTTTWTKPTVQATVETSQLTSSQSSAGPQSQASTSDSGQQVTQPSEIEQG
FLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAHLRGKTSLDTSNDLGPLPPGWEE
RTHTDGRIFYINHNIKRTQWEDPRLENVAITGPAVPYSRDYKRKYEFFRRKLKKQNDIPN
KFEMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMF
NPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFY
KMMLHKPITLHDMESVDSEYYNSLRWILENDPTELDLRFIIDEELFGQTHQHELKNGGSE
IVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLG
DVDVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAEL
YGSNGPQSFTVEQWGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQGFDGVD
Target Type
Literature-reported
Target Bioclass
Enzyme
Subcellular location
Cytoplasm
Function
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Specifically ubiquitinates 'Lys-63' in target proteins. Involved in the pathway leading to the degradation of VEGFR-2/KDFR, independently of its ubiquitin-ligase activity. Monoubiquitinates IGF1R at multiple sites, thus leading to receptor internalization and degradation in lysosomes. Ubiquitinates FGFR1, leading to receptor internalization and degradation in lysosomes. Promotes ubiquitination of RAPGEF2. According tothe direct link between NEDD4 and PTEN regulation through polyubiquitination described inis questionable. Involved in ubiquitination of ERBB4 intracellular domain E4ICD. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. Ubiquitinates TNK2 and regulates EGF-induced degradation of EGFR and TNF2. Ubiquitinates BRAT1 and this ubiquitination is enhanced in the presence of NDFIP1. Ubiquitinates DAZAP2, leading to its proteasomal degradation. Ubiquitinates POLR2A. Functions as a platform to recruit USP13 to form an NEDD4-USP13 deubiquitination complex that plays a critical role in cleaving the 'Lys-48'-linked ubiquitin chains of VPS34 and then stabilizing VPS34, thus promoting the formation of autophagosomes.; (Microbial infection) Involved in the ubiquitination of Ebola virus protein VP40 which plays a role in viral budding.
TTD ID
T94980
Uniprot ID
P46934
DrugMap ID
TT1QU6G
Ensemble ID
ENST00000338963.6
HGNC ID
HGNC:7727
ChEMBL ID
CHEMBL3621023

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 10 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
m-APA
 Probe Info 
15.00  LDD0402  [1]
TH211
 Probe Info 
Y627(17.41)  LDD0260  [2]
STPyne
 Probe Info 
K546(6.67); K566(6.49)  LDD0277  [3]
Probe 1
 Probe Info 
Y1004(13.13)  LDD3495  [4]
DBIA
 Probe Info 
C663(1.21)  LDD3312  [5]
AHL-Pu-1
 Probe Info 
C601(2.72)  LDD0170  [6]
IA-alkyne
 Probe Info 
N.A.  LDD0036  [7]
Lodoacetamide azide
 Probe Info 
N.A.  LDD0037  [7]
NAIA_4
 Probe Info 
N.A.  LDD2226  [8]
IPM
 Probe Info 
N.A.  LDD0005  [9]
PAL-AfBPP Probe
Click To Hide/Show 19 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C004
 Probe Info 
8.75  LDD1714  [10]
C022
 Probe Info 
27.28  LDD1728  [10]
C048
 Probe Info 
7.31  LDD1746  [10]
C106
 Probe Info 
59.30  LDD1793  [10]
C153
 Probe Info 
19.70  LDD1834  [10]
C159
 Probe Info 
11.08  LDD1839  [10]
C161
 Probe Info 
16.11  LDD1841  [10]
C169
 Probe Info 
23.10  LDD1849  [10]
C210
 Probe Info 
66.72  LDD1884  [10]
C282
 Probe Info 
46.85  LDD1952  [10]
C305
 Probe Info 
24.93  LDD1974  [10]
C313
 Probe Info 
22.78  LDD1980  [10]
C326
 Probe Info 
9.58  LDD1990  [10]
C349
 Probe Info 
10.63  LDD2010  [10]
C350
 Probe Info 
43.11  LDD2011  [10]
C353
 Probe Info 
18.77  LDD2014  [10]
C361
 Probe Info 
24.59  LDD2022  [10]
C397
 Probe Info 
15.35  LDD2056  [10]
C399
 Probe Info 
7.26  LDD2058  [10]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0025  4SU-RNA DM93 C601(2.72)  LDD0170  [6]
 LDCM0026  4SU-RNA+native RNA DM93 C601(6.41)  LDD0171  [6]
 LDCM0214  AC1 HEK-293T C601(1.01)  LDD1507  [11]
 LDCM0276  AC17 HEK-293T C601(1.40)  LDD1515  [11]
 LDCM0285  AC25 HEK-293T C601(1.39)  LDD1524  [11]
 LDCM0294  AC33 HEK-293T C601(1.14)  LDD1533  [11]
 LDCM0303  AC41 HEK-293T C601(1.15)  LDD1542  [11]
 LDCM0311  AC49 HEK-293T C601(1.11)  LDD1550  [11]
 LDCM0320  AC57 HEK-293T C601(0.87)  LDD1559  [11]
 LDCM0356  AKOS034007680 HEK-293T C601(1.03)  LDD1570  [11]
 LDCM0156  Aniline NCI-H1299 11.52  LDD0403  [1]
 LDCM0630  CCW28-3 231MFP C601(1.42)  LDD2214  [12]
 LDCM0404  CL17 HEK-293T C601(1.17)  LDD1608  [11]
 LDCM0417  CL29 HEK-293T C601(1.08)  LDD1621  [11]
 LDCM0431  CL41 HEK-293T C601(1.11)  LDD1635  [11]
 LDCM0440  CL5 HEK-293T C601(1.15)  LDD1644  [11]
 LDCM0444  CL53 HEK-293T C601(1.27)  LDD1647  [11]
 LDCM0457  CL65 HEK-293T C601(1.22)  LDD1660  [11]
 LDCM0470  CL77 HEK-293T C601(1.27)  LDD1673  [11]
 LDCM0483  CL89 HEK-293T C601(1.70)  LDD1686  [11]
 LDCM0022  KB02 22RV1 C663(1.43)  LDD2243  [5]
 LDCM0023  KB03 22RV1 C663(1.54)  LDD2660  [5]
 LDCM0024  KB05 HMCB C663(1.21)  LDD3312  [5]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 8 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
DNA-directed RNA polymerases I and III subunit RPAC1 (POLR1C) Archaeal Rpo3/eukaryotic RPB3 RNA polymerase subunit family O15160
PR domain zinc finger protein 4 (PRDM4) Class V-like SAM-binding methyltransferase superfamily Q9UKN5
Transmembrane gamma-carboxyglutamic acid protein 4 (PRRG4) Commissureless family Q9BZD6
OTU domain-containing protein 7B (OTUD7B) Peptidase C64 family Q6GQQ9
Epidermal growth factor receptor (EGFR) Tyr protein kinase family P00533
Fibroblast growth factor receptor 1 (FGFR1) Tyr protein kinase family P11362
Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (PTEN) PTEN phosphatase protein family P60484
E3 ubiquitin-protein ligase SMURF2 (SMURF2) . Q9HAU4
Transporter and channel
Click To Hide/Show 6 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Amiloride-sensitive sodium channel subunit alpha (SCNN1A) Amiloride-sensitive sodium channel family P37088
Amiloride-sensitive sodium channel subunit beta (SCNN1B) Amiloride-sensitive sodium channel (TC 1.A.6) family P51168
Arrestin domain-containing protein 3 (ARRDC3) Arrestin family Q96B67
Gamma-aminobutyric acid receptor-associated protein (GABARAP) ATG8 family O95166
Protein shisa-6 (SHISA6) Shisa family Q6ZSJ9
Transmembrane protein 139 (TMEM139) . Q8IV31
Transcription factor
Click To Hide/Show 4 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Mothers against decapentaplegic homolog 3 (SMAD3) Dwarfin/SMAD family P84022
Nuclear factor of activated T-cells, cytoplasmic 4 (NFATC4) . Q14934
Transcriptional-regulating factor 1 (TRERF1) . Q96PN7
Trinucleotide repeat-containing gene 18 protein (TNRC18) . O15417
Other
Click To Hide/Show 10 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Gamma-aminobutyric acid receptor-associated protein-like 1 (GABARAPL1) ATG8 family Q9H0R8
Gamma-aminobutyric acid receptor-associated protein-like 2 (GABARAPL2) ATG8 family P60520
Microtubule-associated proteins 1A/1B light chain 3B (MAP1LC3B) ATG8 family Q9GZQ8
Cell death-inducing p53-target protein 1 (CDIP1) CDIP1/LITAF family Q9H305
Lipopolysaccharide-induced tumor necrosis factor-alpha factor (LITAF) CDIP1/LITAF family Q99732
Transmembrane protein 151A (TMEM151A) TMEM151 family Q8N4L1
Polyubiquitin-B (UBB) Ubiquitin family P0CG47
Atrophin-1 (ATN1) . P54259
Nuclear receptor coactivator 6 (NCOA6) . Q14686
RING finger protein 11 (RNF11) . Q9Y3C5

References

1 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
2 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
3 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
4 An Azo Coupling-Based Chemoproteomic Approach to Systematically Profile the Tyrosine Reactivity in the Human Proteome. Anal Chem. 2021 Jul 27;93(29):10334-10342. doi: 10.1021/acs.analchem.1c01935. Epub 2021 Jul 12.
5 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
6 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
7 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
8 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
9 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
10 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
11 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
12 Covalent Ligand Screening Uncovers a RNF4 E3 Ligase Recruiter for Targeted Protein Degradation Applications. ACS Chem Biol. 2019 Nov 15;14(11):2430-2440. doi: 10.1021/acschembio.8b01083. Epub 2019 May 13.