General Information of Target

Target ID LDTP03001
Target Name E3 ubiquitin-protein ligase TRIM21 (TRIM21)
Gene Name TRIM21
Gene ID 6737
Synonyms
RNF81; RO52; SSA1; E3 ubiquitin-protein ligase TRIM21; EC 2.3.2.27; 52 kDa Ro protein; 52 kDa ribonucleoprotein autoantigen Ro/SS-A; RING finger protein 81; Ro(SS-A); Sjoegren syndrome type A antigen; SS-A; Tripartite motif-containing protein 21
3D Structure
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2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Sequence
MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLL
KNLRPNRQLANMVNNLKEISQEAREGTQGERCAVHGERLHLFCEKDGKALCWVCAQSRKH
RDHAMVPLEEAAQEYQEKLQVALGELRRKQELAEKLEVEIAIKRADWKKTVETQKSRIHA
EFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEAKLAQQSQALQELISELDRRCHSSA
LELLQEVIIVLERSESWNLKDLDITSPELRSVCHVPGLKKMLRTCAVHITLDPDTANPWL
ILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCR
DSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSF
YNITDHGSLIYSFSECAFTGPLRPFFSPGFNDGGKNTAPLTLCPLNIGSQGSTDY
Target Bioclass
Enzyme
Family
TRIM/RBCC family
Subcellular location
Cytoplasm
Function
E3 ubiquitin-protein ligase whose activity is dependent on E2 enzymes, UBE2D1, UBE2D2, UBE2E1 and UBE2E2 . Forms a ubiquitin ligase complex in cooperation with the E2 UBE2D2 that is used not only for the ubiquitination of USP4 and IKBKB but also for its self-ubiquitination. Component of cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes such as SCF(SKP2)-like complexes. A TRIM21-containing SCF(SKP2)-like complex is shown to mediate ubiquitination of CDKN1B ('Thr-187' phosphorylated-form), thereby promoting its degradation by the proteasome. Monoubiquitinates IKBKB that will negatively regulates Tax-induced NF-kappa-B signaling. Negatively regulates IFN-beta production post-pathogen recognition by catalyzing polyubiquitin-mediated degradation of IRF3. Mediates the ubiquitin-mediated proteasomal degradation of IgG1 heavy chain, which is linked to the VCP-mediated ER-associated degradation (ERAD) pathway. Promotes IRF8 ubiquitination, which enhanced the ability of IRF8 to stimulate cytokine genes transcription in macrophages. Plays a role in the regulation of the cell cycle progression. Enhances the decapping activity of DCP2. Exists as a ribonucleoprotein particle present in all mammalian cells studied and composed of a single polypeptide and one of four small RNA molecules. At least two isoforms are present in nucleated and red blood cells, and tissue specific differences in RO/SSA proteins have been identified. The common feature of these proteins is their ability to bind HY RNAs.2. Involved in the regulation of innate immunity and the inflammatory response in response to IFNG/IFN-gamma. Organizes autophagic machinery by serving as a platform for the assembly of ULK1, Beclin 1/BECN1 and ATG8 family members and recognizes specific autophagy targets, thus coordinating target recognition with assembly of the autophagic apparatus and initiation of autophagy. Regulates also autophagy through FIP200/RB1CC1 ubiquitination and subsequent decreased protein stability. Represses the innate antiviral response by facilitating the formation of the NMI-IFI35 complex through 'Lys-63'-linked ubiquitination of NMI. During viral infection, promotes cell pyroptosis by mediating 'Lys-6'-linked ubiquitination of ISG12a/IFI27, facilitating its translocation into the mitochondria and subsequent CASP3 activation. When up-regulated through the IFN/JAK/STAT signaling pathway, promotes 'Lys-27'-linked ubiquitination of MAVS, leading to the recruitment of TBK1 and up-regulation of innate immunity. Mediates 'Lys-63'-linked polyubiquitination of G3BP1 in response to heat shock, leading to stress granule disassembly.
Uniprot ID
P19474
Ensemble ID
ENST00000254436.8
HGNC ID
HGNC:11312

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
HEC1B SNV: p.T379I .
ICC137 SNV: p.R443W .
K562 SNV: p.G416D .
MEC1 SNV: p.L356M DBIA    Probe Info 
NCIH358 Deletion: p.E304del
SNV: p.S3L
DBIA    Probe Info 
OVK18 SNV: p.K45E .
TE8 SNV: p.A334D DBIA    Probe Info 
TOV21G SNV: p.G416C DBIA    Probe Info 

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 9 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
BTD
 Probe Info 
C273(1.10)  LDD2111  [1]
NAIA_5
 Probe Info 
C463(1.82)  LDD2227  [2]
IPM
 Probe Info 
C273(1.70)  LDD1701  [1]
Acrolein
 Probe Info 
N.A.  LDD0221  [3]
DBIA
 Probe Info 
C103(1.00)  LDD0531  [4]
4-Iodoacetamidophenylacetylene
 Probe Info 
C236(0.00); C359(0.00); C103(0.00); C92(0.00)  LDD0038  [5]
IA-alkyne
 Probe Info 
C236(0.00); C359(0.00); C103(0.00); C273(0.00)  LDD0036  [5]
Lodoacetamide azide
 Probe Info 
C236(0.00); C359(0.00); C103(0.00); C273(0.00)  LDD0037  [5]
TFBX
 Probe Info 
N.A.  LDD0148  [6]
PAL-AfBPP Probe
Click To Hide/Show 11 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C187
 Probe Info 
15.24  LDD1865  [7]
C191
 Probe Info 
14.72  LDD1868  [7]
C286
 Probe Info 
6.15  LDD1956  [7]
C290
 Probe Info 
5.03  LDD1960  [7]
C322
 Probe Info 
6.28  LDD1988  [7]
C326
 Probe Info 
7.36  LDD1990  [7]
C342
 Probe Info 
5.54  LDD2004  [7]
C347
 Probe Info 
6.15  LDD2008  [7]
C353
 Probe Info 
8.75  LDD2014  [7]
C354
 Probe Info 
11.47  LDD2015  [7]
C414
 Probe Info 
5.17  LDD2070  [7]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HCT 116 C103(1.00)  LDD0531  [4]
 LDCM0215  AC10 HCT 116 C103(0.92)  LDD0532  [4]
 LDCM0226  AC11 HCT 116 C103(0.97)  LDD0543  [4]
 LDCM0230  AC113 HCT 116 C103(1.11)  LDD0547  [4]
 LDCM0231  AC114 HCT 116 C103(1.01)  LDD0548  [4]
 LDCM0232  AC115 HCT 116 C103(1.06)  LDD0549  [4]
 LDCM0233  AC116 HCT 116 C103(1.06)  LDD0550  [4]
 LDCM0234  AC117 HCT 116 C103(1.01)  LDD0551  [4]
 LDCM0235  AC118 HCT 116 C103(1.11)  LDD0552  [4]
 LDCM0236  AC119 HCT 116 C103(1.22)  LDD0553  [4]
 LDCM0237  AC12 HCT 116 C103(0.91)  LDD0554  [4]
 LDCM0238  AC120 HCT 116 C103(0.99)  LDD0555  [4]
 LDCM0239  AC121 HCT 116 C103(0.91)  LDD0556  [4]
 LDCM0240  AC122 HCT 116 C103(0.95)  LDD0557  [4]
 LDCM0241  AC123 HCT 116 C103(0.83)  LDD0558  [4]
 LDCM0242  AC124 HCT 116 C103(0.85)  LDD0559  [4]
 LDCM0243  AC125 HCT 116 C103(1.00)  LDD0560  [4]
 LDCM0244  AC126 HCT 116 C103(1.17)  LDD0561  [4]
 LDCM0245  AC127 HCT 116 C103(0.99)  LDD0562  [4]
 LDCM0259  AC14 HCT 116 C103(0.86)  LDD0576  [4]
 LDCM0263  AC143 HCT 116 C103(0.96)  LDD0580  [4]
 LDCM0264  AC144 HCT 116 C103(0.99)  LDD0581  [4]
 LDCM0265  AC145 HCT 116 C103(1.05)  LDD0582  [4]
 LDCM0266  AC146 HCT 116 C103(1.27)  LDD0583  [4]
 LDCM0267  AC147 HCT 116 C103(0.87)  LDD0584  [4]
 LDCM0268  AC148 HCT 116 C103(1.88)  LDD0585  [4]
 LDCM0269  AC149 HCT 116 C103(1.66)  LDD0586  [4]
 LDCM0270  AC15 HCT 116 C103(0.82)  LDD0587  [4]
 LDCM0271  AC150 HCT 116 C103(0.99)  LDD0588  [4]
 LDCM0272  AC151 HCT 116 C103(1.07)  LDD0589  [4]
 LDCM0273  AC152 HCT 116 C103(0.99)  LDD0590  [4]
 LDCM0274  AC153 HCT 116 C103(1.56)  LDD0591  [4]
 LDCM0621  AC154 HCT 116 C103(1.02)  LDD2158  [4]
 LDCM0622  AC155 HCT 116 C103(1.20)  LDD2159  [4]
 LDCM0623  AC156 HCT 116 C103(1.21)  LDD2160  [4]
 LDCM0624  AC157 HCT 116 C103(1.24)  LDD2161  [4]
 LDCM0276  AC17 HCT 116 C103(1.09)  LDD0593  [4]
 LDCM0277  AC18 HCT 116 C103(1.16)  LDD0594  [4]
 LDCM0278  AC19 HCT 116 C103(1.05)  LDD0595  [4]
 LDCM0279  AC2 HCT 116 C103(0.82)  LDD0596  [4]
 LDCM0280  AC20 HCT 116 C103(1.15)  LDD0597  [4]
 LDCM0281  AC21 HCT 116 C103(1.07)  LDD0598  [4]
 LDCM0282  AC22 HCT 116 C103(0.94)  LDD0599  [4]
 LDCM0283  AC23 HCT 116 C103(0.99)  LDD0600  [4]
 LDCM0284  AC24 HCT 116 C103(1.04)  LDD0601  [4]
 LDCM0290  AC3 HCT 116 C103(0.80)  LDD0607  [4]
 LDCM0296  AC35 HCT 116 C103(1.00)  LDD0613  [4]
 LDCM0297  AC36 HCT 116 C103(1.13)  LDD0614  [4]
 LDCM0298  AC37 HCT 116 C103(1.11)  LDD0615  [4]
 LDCM0299  AC38 HCT 116 C103(1.09)  LDD0616  [4]
 LDCM0300  AC39 HCT 116 C103(1.14)  LDD0617  [4]
 LDCM0301  AC4 HCT 116 C103(0.88)  LDD0618  [4]
 LDCM0302  AC40 HCT 116 C103(1.02)  LDD0619  [4]
 LDCM0303  AC41 HCT 116 C103(1.07)  LDD0620  [4]
 LDCM0304  AC42 HCT 116 C103(1.05)  LDD0621  [4]
 LDCM0305  AC43 HCT 116 C103(1.07)  LDD0622  [4]
 LDCM0306  AC44 HCT 116 C103(1.16)  LDD0623  [4]
 LDCM0307  AC45 HCT 116 C103(1.03)  LDD0624  [4]
 LDCM0308  AC46 HCT 116 C103(0.86)  LDD0625  [4]
 LDCM0309  AC47 HCT 116 C103(1.00)  LDD0626  [4]
 LDCM0310  AC48 HCT 116 C103(1.07)  LDD0627  [4]
 LDCM0311  AC49 HCT 116 C103(0.79)  LDD0628  [4]
 LDCM0312  AC5 HCT 116 C103(0.91)  LDD0629  [4]
 LDCM0313  AC50 HCT 116 C103(0.83)  LDD0630  [4]
 LDCM0314  AC51 HCT 116 C103(0.81)  LDD0631  [4]
 LDCM0315  AC52 HCT 116 C103(0.86)  LDD0632  [4]
 LDCM0316  AC53 HCT 116 C103(0.93)  LDD0633  [4]
 LDCM0317  AC54 HCT 116 C103(0.83)  LDD0634  [4]
 LDCM0318  AC55 HCT 116 C103(0.89)  LDD0635  [4]
 LDCM0319  AC56 HCT 116 C103(0.82)  LDD0636  [4]
 LDCM0323  AC6 HCT 116 C103(0.99)  LDD0640  [4]
 LDCM0334  AC7 HCT 116 C103(0.94)  LDD0651  [4]
 LDCM0345  AC8 HCT 116 C103(0.84)  LDD0662  [4]
 LDCM0349  AC83 HCT 116 C103(1.19)  LDD0666  [4]
 LDCM0350  AC84 HCT 116 C103(1.28)  LDD0667  [4]
 LDCM0351  AC85 HCT 116 C103(1.10)  LDD0668  [4]
 LDCM0352  AC86 HCT 116 C103(1.07)  LDD0669  [4]
 LDCM0353  AC87 HCT 116 C103(0.99)  LDD0670  [4]
 LDCM0354  AC88 HCT 116 C103(1.04)  LDD0671  [4]
 LDCM0355  AC89 HCT 116 C103(1.01)  LDD0672  [4]
 LDCM0357  AC90 HCT 116 C103(1.00)  LDD0674  [4]
 LDCM0358  AC91 HCT 116 C103(1.06)  LDD0675  [4]
 LDCM0359  AC92 HCT 116 C103(0.93)  LDD0676  [4]
 LDCM0360  AC93 HCT 116 C103(0.82)  LDD0677  [4]
 LDCM0361  AC94 HCT 116 C103(1.00)  LDD0678  [4]
 LDCM0362  AC95 HCT 116 C103(0.98)  LDD0679  [4]
 LDCM0363  AC96 HCT 116 C103(1.19)  LDD0680  [4]
 LDCM0364  AC97 HCT 116 C103(0.90)  LDD0681  [4]
 LDCM0248  AKOS034007472 HCT 116 C103(0.87)  LDD0565  [4]
 LDCM0356  AKOS034007680 HCT 116 C103(0.96)  LDD0673  [4]
 LDCM0275  AKOS034007705 HCT 116 C103(0.80)  LDD0592  [4]
 LDCM0632  CL-Sc Hep-G2 C463(1.82)  LDD2227  [2]
 LDCM0367  CL1 HCT 116 C103(0.88)  LDD0684  [4]
 LDCM0368  CL10 HCT 116 C103(1.02)  LDD0685  [4]
 LDCM0369  CL100 HCT 116 C103(0.71)  LDD0686  [4]
 LDCM0370  CL101 HCT 116 C103(0.93)  LDD0687  [4]
 LDCM0371  CL102 HCT 116 C103(0.88)  LDD0688  [4]
 LDCM0372  CL103 HCT 116 C103(1.07)  LDD0689  [4]
 LDCM0373  CL104 HCT 116 C103(0.79)  LDD0690  [4]
 LDCM0374  CL105 HCT 116 C103(1.16)  LDD0691  [4]
 LDCM0375  CL106 HCT 116 C103(1.07)  LDD0692  [4]
 LDCM0376  CL107 HCT 116 C103(1.11)  LDD0693  [4]
 LDCM0377  CL108 HCT 116 C103(1.14)  LDD0694  [4]
 LDCM0378  CL109 HCT 116 C103(1.13)  LDD0695  [4]
 LDCM0379  CL11 HCT 116 C103(0.72)  LDD0696  [4]
 LDCM0380  CL110 HCT 116 C103(1.02)  LDD0697  [4]
 LDCM0381  CL111 HCT 116 C103(1.01)  LDD0698  [4]
 LDCM0387  CL117 HCT 116 C103(1.06)  LDD0704  [4]
 LDCM0388  CL118 HCT 116 C103(1.07)  LDD0705  [4]
 LDCM0389  CL119 HCT 116 C103(0.95)  LDD0706  [4]
 LDCM0390  CL12 HCT 116 C103(0.93)  LDD0707  [4]
 LDCM0391  CL120 HCT 116 C103(1.03)  LDD0708  [4]
 LDCM0392  CL121 HCT 116 C103(0.74)  LDD0709  [4]
 LDCM0393  CL122 HCT 116 C103(0.93)  LDD0710  [4]
 LDCM0394  CL123 HCT 116 C103(0.82)  LDD0711  [4]
 LDCM0395  CL124 HCT 116 C103(0.85)  LDD0712  [4]
 LDCM0400  CL13 HCT 116 C103(0.91)  LDD0717  [4]
 LDCM0401  CL14 HCT 116 C103(0.74)  LDD0718  [4]
 LDCM0402  CL15 HCT 116 C103(0.73)  LDD0719  [4]
 LDCM0407  CL2 HCT 116 C103(0.99)  LDD0724  [4]
 LDCM0418  CL3 HCT 116 C103(0.99)  LDD0735  [4]
 LDCM0420  CL31 HCT 116 C103(1.12)  LDD0737  [4]
 LDCM0421  CL32 HCT 116 C103(1.05)  LDD0738  [4]
 LDCM0422  CL33 HCT 116 C103(0.99)  LDD0739  [4]
 LDCM0423  CL34 HCT 116 C103(1.09)  LDD0740  [4]
 LDCM0424  CL35 HCT 116 C103(0.93)  LDD0741  [4]
 LDCM0425  CL36 HCT 116 C103(0.95)  LDD0742  [4]
 LDCM0426  CL37 HCT 116 C103(0.96)  LDD0743  [4]
 LDCM0428  CL39 HCT 116 C103(1.09)  LDD0745  [4]
 LDCM0429  CL4 HCT 116 C103(0.85)  LDD0746  [4]
 LDCM0430  CL40 HCT 116 C103(1.08)  LDD0747  [4]
 LDCM0431  CL41 HCT 116 C103(1.06)  LDD0748  [4]
 LDCM0432  CL42 HCT 116 C103(0.94)  LDD0749  [4]
 LDCM0433  CL43 HCT 116 C103(1.18)  LDD0750  [4]
 LDCM0434  CL44 HCT 116 C103(1.05)  LDD0751  [4]
 LDCM0435  CL45 HCT 116 C103(1.08)  LDD0752  [4]
 LDCM0440  CL5 HCT 116 C103(0.94)  LDD0757  [4]
 LDCM0451  CL6 HCT 116 C103(0.83)  LDD0768  [4]
 LDCM0462  CL7 HCT 116 C103(0.93)  LDD0779  [4]
 LDCM0473  CL8 HCT 116 C103(0.58)  LDD0790  [4]
 LDCM0484  CL9 HCT 116 C103(0.79)  LDD0801  [4]
 LDCM0486  CL91 HCT 116 C103(0.83)  LDD0803  [4]
 LDCM0487  CL92 HCT 116 C103(0.90)  LDD0804  [4]
 LDCM0488  CL93 HCT 116 C103(0.96)  LDD0805  [4]
 LDCM0489  CL94 HCT 116 C103(0.86)  LDD0806  [4]
 LDCM0490  CL95 HCT 116 C103(0.67)  LDD0807  [4]
 LDCM0491  CL96 HCT 116 C103(0.96)  LDD0808  [4]
 LDCM0492  CL97 HCT 116 C103(0.86)  LDD0809  [4]
 LDCM0493  CL98 HCT 116 C103(0.85)  LDD0810  [4]
 LDCM0494  CL99 HCT 116 C103(0.95)  LDD0811  [4]
 LDCM0427  Fragment51 HCT 116 C103(1.10)  LDD0744  [4]
 LDCM0107  IAA HeLa N.A.  LDD0221  [3]
 LDCM0022  KB02 42-MG-BA C92(1.72)  LDD2244  [8]
 LDCM0023  KB03 MDA-MB-231 C273(1.70)  LDD1701  [1]
 LDCM0024  KB05 G361 C92(1.13)  LDD3311  [8]
 LDCM0518  Nucleophilic fragment 22a MDA-MB-231 C273(1.10)  LDD2111  [1]
 LDCM0549  Nucleophilic fragment 43 MDA-MB-231 C273(0.78)  LDD2143  [1]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 11 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Peroxisomal bifunctional enzyme (EHHADH) Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase family Q08426
Polyunsaturated fatty acid lipoxygenase ALOX15B (ALOX15B) Lipoxygenase family O15296
Ubiquitin carboxyl-terminal hydrolase isozyme L1 (UCHL1) Peptidase C12 family P09936
Ubiquitin carboxyl-terminal hydrolase 15 (USP15) Peptidase C19 family Q9Y4E8
Tensin-4 (TNS4) PTEN phosphatase protein family Q8IZW8
Thioredoxin, mitochondrial (TXN2) Thioredoxin family Q99757
E3 ubiquitin-protein ligase TRIM21 (TRIM21) TRIM/RBCC family P19474
E3 ubiquitin-protein ligase TRIM39 (TRIM39) TRIM/RBCC family Q9HCM9
Tripartite motif-containing protein 3 (TRIM3) TRIM/RBCC family O75382
E3 ubiquitin-protein ligase LNX (LNX1) . Q8TBB1
Germ cell-less protein-like 1 (GMCL1) . Q96IK5
Transporter and channel
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Exocyst complex component 8 (EXOC8) EXO84 family Q8IYI6
Huntingtin (HTT) Huntingtin family P42858
Alpha-synuclein (SNCA) Synuclein family P37840
Transcription factor
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Zinc finger and BTB domain-containing protein 16 (ZBTB16) Krueppel C2H2-type zinc-finger protein family Q05516
DNA methyltransferase 1-associated protein 1 (DMAP1) . Q9NPF5
Cytokine and receptor
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Endoglin (ENG) . P17813
Other
Click To Hide/Show 8 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Splicing factor YJU2 (YJU2) CWC16 family Q9BW85
Pre-mRNA-splicing factor CWC25 homolog (CWC25) CWC25 family Q9NXE8
FH1/FH2 domain-containing protein 1 (FHOD1) Formin homology family Q9Y613
GRB2-related adapter protein (GRAP) GRB2/sem-5/DRK family Q13588
T-complex protein 11-like protein 1 (TCP11L1) TCP11 family Q9NUJ3
RING finger protein 11 (RNF11) . Q9Y3C5
VPS9 domain-containing protein 1 (VPS9D1) . Q9Y2B5
XIAP-associated factor 1 (XAF1) . Q6GPH4

References

1 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
2 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
3 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
4 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
5 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
6 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
7 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
8 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840