Details of the Probe

General Information of Probe

Probe ID
LDPC0189
Probe Name
11RK73
Probe Type
ABPP Probe
Structure
2D MOL
Ro5 Violations (Lipinski): 3 Molecular Weight (mw) 817.996
Lipid-water partition coefficient (xlogp) 0.46938
Rotatable Bond Count (rotbonds) 23
Hydrogen Bond Donor Count (hbonddonor) 4
Hydrogen Bond Acceptor Count (hbondacc) 16
Chemical Identifiers
Formula
C35H51N11O8S2
Canonical SMILES
[H]C12CSC(CCCCC(=O)NCCOCCOCCOCCOCc3cn(CC(=O)N4CCc5nc(NC(=O)C6CCN(C#N)C6)sc5C4)nn3)C1([H])NC(=O)N2
InChI
InChI=1S/C35H51N11O8S2/c36-23-44-8-5-24(17-44)33(49)41-35-39-26-6-9-45(19-29(26)56-35)31(48)20-46-18-25(42-43-46)21-54-16-15-53-14-13-52-12-11-51-10-7-37-30(47)4-2-1-3-28-32-27(22-55-28)38-34(50)40-32/h18,24,27-28,32H,1-17,19-22H2,(H,37,47)(H2,38,40,50)(H,39,41,49)/t24-,27+,28+,32+/m0/s1
InChIKey
OZMRLFGFDFLQTD-BCZYHNNCSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

23 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
26S proteasome non-ATPase regulatory subunit 3 (PSMD3) LDTP00714 2.00  LDD0328 
60 kDa heat shock protein, mitochondrial (HSPD1) LDTP02522 5.31  LDD0328 
Actin, cytoplasmic 2 (ACTG1) LDTP05059 2.51  LDD0328 
Apoptosis-inducing factor 1, mitochondrial (AIFM1) LDTP01687 3.32  LDD0328 
Arginine--tRNA ligase, cytoplasmic (RARS1) LDTP04601 2.27  LDD0328 
ATP-dependent RNA helicase DDX3X (DDX3X) LDTP00314 2.60  LDD0328 
ATP-dependent RNA helicase DHX15 (DHX15) LDTP00684 2.80  LDD0328 
Bifunctional glutamate/proline--tRNA ligase (EPRS1) LDTP02222 2.63  LDD0328 
DNA replication licensing factor MCM3 (MCM3) LDTP03316 6.53  LDD0328 
DNA-dependent protein kinase catalytic subunit (PRKDC) LDTP05136 7.08  LDD0328 
Elongation factor 1-alpha 1 (EEF1A1) LDTP05071 2.58  LDD0328 
Elongation factor 2 (EEF2) LDTP02672 6.04  LDD0328 
Endoplasmic reticulum chaperone BiP (HSPA5) LDTP02534 3.60  LDD0328 
Heat shock cognate 71 kDa protein (HSPA8) LDTP02541 2.48  LDD0328 
Inosine-5'-monophosphate dehydrogenase 2 (IMPDH2) LDTP02611 6.17  LDD0328 
Isochorismatase domain-containing protein 1 (ISOC1) LDTP19851 6.53  LDD0328 
Isoleucine--tRNA ligase, cytoplasmic (IARS1) LDTP03947 2.71  LDD0328 
Methionine--tRNA ligase, cytoplasmic (MARS1) LDTP04730 3.37  LDD0328 
Multifunctional protein CAD (CAD) LDTP03401 7.13  LDD0328 
Parkinson disease protein 7 (PARK7) LDTP10878 14.71  LDD0328 
Poly [ADP-ribose] polymerase 1 (PARP1) LDTP02375 2.23  LDD0328 
Probable ATP-dependent RNA helicase DDX17 (DDX17) LDTP09899 2.34  LDD0328 
Sodium/potassium-transporting ATPase subunit alpha-1 (ATP1A1) LDTP02067 3.76  LDD0328 
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⏷ Show the Full List of 23 Enzyme
10 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
ADP/ATP translocase 2 (SLC25A5) LDTP02087 3.54  LDD0328 
Amino acid transporter heavy chain SLC3A2 (SLC3A2) LDTP02256 4.79  LDD0328 
BOS complex subunit NCLN (NCLN) LDTP10036 2.10  LDD0328 
Desmoplakin (DSP) LDTP02815 3.44  LDD0328 
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (RPN1) LDTP02057 5.36  LDD0328 
Electrogenic aspartate/glutamate antiporter SLC25A13, mitochondrial (SLC25A13) LDTP13393 3.31  LDD0328 
Heat shock protein HSP 90-beta (HSP90AB1) LDTP02262 4.40  LDD0328 
Importin subunit beta-1 (KPNB1) LDTP06242 4.77  LDD0328 
Nuclear pore complex protein Nup93 (NUP93) LDTP08769 4.25  LDD0328 
T-complex protein 1 subunit delta (CCT4) LDTP04391 5.19  LDD0328 
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⏷ Show the Full List of 10 Transporter and channel
22 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Cytoplasmic dynein 1 heavy chain 1 (DYNC1H1) LDTP06083 4.19  LDD0328 
DNA mismatch repair protein Msh6 (MSH6) LDTP04518 4.85  LDD0328 
Eukaryotic translation initiation factor 3 subunit A (EIF3A) LDTP06055 2.66  LDD0328 
Eukaryotic translation initiation factor 3 subunit B (EIF3B) LDTP04718 2.67  LDD0328 
Eukaryotic translation initiation factor 3 subunit D (EIF3D) LDTP00619 2.02  LDD0328 
Eukaryotic translation initiation factor 4 gamma 1 (EIF4G1) LDTP05421 3.93  LDD0328 
F-box only protein 22 (FBXO22) LDTP09187 2.56  LDD0328 
Far upstream element-binding protein 2 (KHSRP) LDTP09938 6.74  LDD0328 
Heat shock 70 kDa protein 1B (HSPA1B) LDTP02435 3.11  LDD0328 
Heterogeneous nuclear ribonucleoprotein F (HNRNPF) LDTP04514 3.42  LDD0328 
Heterogeneous nuclear ribonucleoprotein K (HNRNPK) LDTP04952 2.86  LDD0328 
Keratin, type I cuticular Ha1 (KRT31) LDTP06357 7.67  LDD0328 
Keratin, type II cuticular Hb3 (KRT83) LDTP05118 5.95  LDD0328 
Poly(rC)-binding protein 1 (PCBP1) LDTP06366 2.97  LDD0328 
Poly(rC)-binding protein 2 (PCBP2) LDTP06367 3.14  LDD0328 
Protein RCC2 (RCC2) LDTP13020 3.67  LDD0328 
Small ribosomal subunit protein eS1 (RPS3A) LDTP04913 2.09  LDD0328 
Stalled ribosome sensor GCN1 (GCN1) LDTP09821 7.42  LDD0328 
T-complex protein 1 subunit alpha (TCP1) LDTP02934 3.41  LDD0328 
T-complex protein 1 subunit eta (CCT7) LDTP10990 5.22  LDD0328 
T-complex protein 1 subunit gamma (CCT3) LDTP04249 4.85  LDD0328 
Ubiquitin-ribosomal protein eL40 fusion protein (UBA52) LDTP05034 3.96  LDD0328 
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⏷ Show the Full List of 22 Other

Full Information of The Labelling Profiles of This Probe

Quantification: Probe vs DMSO
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
5 uM
Quantitative Method
LFQ
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Peripheral blood
Disease Model
Normal
Model Name
Human normal cells (HEK-293T)
Interaction Atlas ID
 LDD0328 
Download The Altas

References

1 Small-Molecule Activity-Based Probe for Monitoring Ubiquitin C-Terminal Hydrolase L1 (UCHL1) Activity in Live Cells and Zebrafish Embryos. J Am Chem Soc. 2020 Sep 30;142(39):16825-16841. doi: 10.1021/jacs.0c07726. Epub 2020 Sep 18.
Mass spectrometry data entry: PXD021557 , PXD015828