Details of the Target

General Information of Target

Target ID LDTP12346
Target Name Exosome complex component RRP41 (EXOSC4)
Gene Name EXOSC4
Gene ID 54512
Synonyms
RRP41; SKI6; Exosome complex component RRP41; Exosome component 4; Ribosomal RNA-processing protein 41; p12A
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRS
IWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
AAEAKERENNENSNSNSHNPLNGSGKSVLGSSEDEKTPSGTPDHSSSSPALLLSPPPPGL
PSLHSLGHPPGPSAVPVPVPGGGGADPLQHHHGLQDSILNPMSANLVDLGS
Target Bioclass
Enzyme
Family
RNase PH family
Subcellular location
Cytoplasm
Function
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. EXOSC4 binds to ARE-containing RNAs.
Uniprot ID
Q9NPD3
Ensemble ID
ENST00000316052.6
HGNC ID
HGNC:18189

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 24 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
m-APA
 Probe Info  		15.00  LDD0402  [1]
Probe 1
 Probe Info  		Y53(10.02)  LDD3495  [2]
AHL-Pu-1
 Probe Info  		C97(2.71)  LDD0168  [3]
EA-probe
 Probe Info  		N.A.  LDD0440  [4]
DBIA
 Probe Info  		C97(1.98)  LDD0080  [5]
ATP probe
 Probe Info  		N.A.  LDD0199  [6]
4-Iodoacetamidophenylacetylene
 Probe Info  		C74(0.00); C97(0.00)  LDD0038  [7]
IA-alkyne
 Probe Info  		N.A.  LDD0032  [8]
Lodoacetamide azide
 Probe Info  		C74(0.00); C97(0.00)  LDD0037  [7]
BTD
 Probe Info  		N.A.  LDD0004  [9]
JW-RF-010
 Probe Info  		N.A.  LDD0026  [10]
TFBX
 Probe Info  		N.A.  LDD0027  [10]
Compound 10
 Probe Info  		N.A.  LDD2216  [11]
Compound 11
 Probe Info  		N.A.  LDD2213  [11]
IPM
 Probe Info  		N.A.  LDD0005  [9]
SF
 Probe Info  		N.A.  LDD0028  [12]
VSF
 Probe Info  		N.A.  LDD0007  [9]
Phosphinate-6
 Probe Info  		N.A.  LDD0018  [13]
Acrolein
 Probe Info  		N.A.  LDD0217  [14]
Crotonaldehyde
 Probe Info  		H206(0.00); H209(0.00)  LDD0219  [14]
Methacrolein
 Probe Info  		C97(0.00); H209(0.00)  LDD0218  [14]
AOyne
 Probe Info  		15.00  LDD0443  [15]
NAIA_5
 Probe Info  		C74(0.00); C97(0.00)  LDD2223  [16]
TER-AC
 Probe Info  		N.A.  LDD0426  [17]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0548  1-(4-(Benzo[d][1,3]dioxol-5-ylmethyl)piperazin-1-yl)-2-nitroethan-1-one MDA-MB-231 C97(0.83)  LDD2142  [18]
 LDCM0519  1-(6-methoxy-3,4-dihydroquinolin-1(2H)-yl)-2-nitroethan-1-one MDA-MB-231 C97(1.15)  LDD2112  [18]
 LDCM0502  1-(Cyanoacetyl)piperidine MDA-MB-231 C97(0.52)  LDD2095  [18]
 LDCM0537  2-Cyano-N,N-dimethylacetamide MDA-MB-231 C97(0.71)  LDD2130  [18]
 LDCM0524  2-Cyano-N-(2-morpholin-4-yl-ethyl)-acetamide MDA-MB-231 C97(1.16)  LDD2117  [18]
 LDCM0539  3-(4-Isopropylpiperazin-1-yl)-3-oxopropanenitrile MDA-MB-231 C97(0.59)  LDD2132  [18]
 LDCM0025  4SU-RNA HEK-293T C97(2.71)  LDD0168  [3]
 LDCM0026  4SU-RNA+native RNA HEK-293T C97(2.70)  LDD0169  [3]
 LDCM0214  AC1 HCT 116 C97(1.16)  LDD0531  [5]
 LDCM0215  AC10 HCT 116 C97(1.10)  LDD0532  [5]
 LDCM0216  AC100 HCT 116 C97(0.99)  LDD0533  [5]
 LDCM0217  AC101 HCT 116 C97(1.29)  LDD0534  [5]
 LDCM0218  AC102 HCT 116 C97(1.11)  LDD0535  [5]
 LDCM0219  AC103 HCT 116 C97(1.15)  LDD0536  [5]
 LDCM0220  AC104 HCT 116 C97(1.23)  LDD0537  [5]
 LDCM0221  AC105 HCT 116 C97(1.42)  LDD0538  [5]
 LDCM0222  AC106 HCT 116 C97(1.59)  LDD0539  [5]
 LDCM0223  AC107 HCT 116 C97(1.05)  LDD0540  [5]
 LDCM0224  AC108 HCT 116 C97(1.03)  LDD0541  [5]
 LDCM0225  AC109 HCT 116 C97(1.14)  LDD0542  [5]
 LDCM0226  AC11 HCT 116 C97(1.08)  LDD0543  [5]
 LDCM0227  AC110 HCT 116 C97(1.38)  LDD0544  [5]
 LDCM0228  AC111 HCT 116 C97(1.26)  LDD0545  [5]
 LDCM0229  AC112 HCT 116 C97(1.02)  LDD0546  [5]
 LDCM0230  AC113 HCT 116 C97(1.12)  LDD0547  [5]
 LDCM0231  AC114 HCT 116 C97(1.41)  LDD0548  [5]
 LDCM0232  AC115 HCT 116 C97(1.91)  LDD0549  [5]
 LDCM0233  AC116 HCT 116 C97(1.53)  LDD0550  [5]
 LDCM0234  AC117 HCT 116 C97(1.25)  LDD0551  [5]
 LDCM0235  AC118 HCT 116 C97(1.29)  LDD0552  [5]
 LDCM0236  AC119 HCT 116 C97(1.37)  LDD0553  [5]
 LDCM0237  AC12 HCT 116 C97(1.05)  LDD0554  [5]
 LDCM0238  AC120 HCT 116 C97(1.34)  LDD0555  [5]
 LDCM0239  AC121 HCT 116 C97(1.48)  LDD0556  [5]
 LDCM0240  AC122 HCT 116 C97(1.26)  LDD0557  [5]
 LDCM0241  AC123 HCT 116 C97(1.35)  LDD0558  [5]
 LDCM0242  AC124 HCT 116 C97(1.27)  LDD0559  [5]
 LDCM0243  AC125 HCT 116 C97(1.49)  LDD0560  [5]
 LDCM0244  AC126 HCT 116 C97(1.60)  LDD0561  [5]
 LDCM0245  AC127 HCT 116 C97(1.51)  LDD0562  [5]
 LDCM0246  AC128 HCT 116 C97(1.01)  LDD0563  [5]
 LDCM0247  AC129 HCT 116 C97(1.12)  LDD0564  [5]
 LDCM0249  AC130 HCT 116 C97(1.32)  LDD0566  [5]
 LDCM0250  AC131 HCT 116 C97(1.16)  LDD0567  [5]
 LDCM0251  AC132 HCT 116 C97(1.30)  LDD0568  [5]
 LDCM0252  AC133 HCT 116 C97(1.35)  LDD0569  [5]
 LDCM0253  AC134 HCT 116 C97(1.38)  LDD0570  [5]
 LDCM0254  AC135 HCT 116 C97(1.13)  LDD0571  [5]
 LDCM0255  AC136 HCT 116 C97(1.32)  LDD0572  [5]
 LDCM0256  AC137 HCT 116 C97(1.22)  LDD0573  [5]
 LDCM0257  AC138 HCT 116 C97(1.70)  LDD0574  [5]
 LDCM0258  AC139 HCT 116 C97(1.57)  LDD0575  [5]
 LDCM0259  AC14 HCT 116 C97(1.01)  LDD0576  [5]
 LDCM0260  AC140 HCT 116 C97(1.72)  LDD0577  [5]
 LDCM0261  AC141 HCT 116 C97(1.56)  LDD0578  [5]
 LDCM0262  AC142 HCT 116 C97(1.33)  LDD0579  [5]
 LDCM0263  AC143 HCT 116 C97(1.14)  LDD0580  [5]
 LDCM0264  AC144 HCT 116 C97(1.04)  LDD0581  [5]
 LDCM0265  AC145 HCT 116 C97(1.00)  LDD0582  [5]
 LDCM0266  AC146 HCT 116 C97(1.08)  LDD0583  [5]
 LDCM0267  AC147 HCT 116 C97(1.00)  LDD0584  [5]
 LDCM0268  AC148 HCT 116 C97(1.28)  LDD0585  [5]
 LDCM0269  AC149 HCT 116 C97(1.27)  LDD0586  [5]
 LDCM0270  AC15 HCT 116 C97(1.16)  LDD0587  [5]
 LDCM0271  AC150 HCT 116 C97(1.09)  LDD0588  [5]
 LDCM0272  AC151 HCT 116 C97(1.15)  LDD0589  [5]
 LDCM0273  AC152 HCT 116 C97(1.00)  LDD0590  [5]
 LDCM0274  AC153 HCT 116 C97(1.34)  LDD0591  [5]
 LDCM0621  AC154 HCT 116 C97(0.99)  LDD2158  [5]
 LDCM0622  AC155 HCT 116 C97(1.15)  LDD2159  [5]
 LDCM0623  AC156 HCT 116 C97(1.06)  LDD2160  [5]
 LDCM0624  AC157 HCT 116 C97(1.02)  LDD2161  [5]
 LDCM0276  AC17 HCT 116 C97(1.03)  LDD0593  [5]
 LDCM0277  AC18 HCT 116 C97(1.17)  LDD0594  [5]
 LDCM0278  AC19 HCT 116 C97(1.01)  LDD0595  [5]
 LDCM0279  AC2 HCT 116 C97(1.09)  LDD0596  [5]
 LDCM0280  AC20 HCT 116 C97(1.10)  LDD0597  [5]
 LDCM0281  AC21 HCT 116 C97(1.09)  LDD0598  [5]
 LDCM0282  AC22 HCT 116 C97(0.90)  LDD0599  [5]
 LDCM0283  AC23 HCT 116 C97(1.15)  LDD0600  [5]
 LDCM0284  AC24 HCT 116 C97(1.00)  LDD0601  [5]
 LDCM0285  AC25 HCT 116 C97(0.80)  LDD0602  [5]
 LDCM0286  AC26 HCT 116 C97(1.01)  LDD0603  [5]
 LDCM0287  AC27 HCT 116 C97(1.09)  LDD0604  [5]
 LDCM0288  AC28 HCT 116 C97(1.04)  LDD0605  [5]
 LDCM0289  AC29 HCT 116 C97(1.13)  LDD0606  [5]
 LDCM0290  AC3 HCT 116 C97(1.24)  LDD0607  [5]
 LDCM0291  AC30 HCT 116 C97(1.02)  LDD0608  [5]
 LDCM0292  AC31 HCT 116 C97(0.97)  LDD0609  [5]
 LDCM0293  AC32 HCT 116 C97(1.27)  LDD0610  [5]
 LDCM0294  AC33 HCT 116 C97(0.98)  LDD0611  [5]
 LDCM0295  AC34 HCT 116 C97(1.18)  LDD0612  [5]
 LDCM0296  AC35 HCT 116 C97(0.97)  LDD0613  [5]
 LDCM0297  AC36 HCT 116 C97(0.94)  LDD0614  [5]
 LDCM0298  AC37 HCT 116 C97(0.99)  LDD0615  [5]
 LDCM0299  AC38 HCT 116 C97(1.24)  LDD0616  [5]
 LDCM0300  AC39 HCT 116 C97(1.22)  LDD0617  [5]
 LDCM0301  AC4 HCT 116 C97(1.21)  LDD0618  [5]
 LDCM0302  AC40 HCT 116 C97(1.40)  LDD0619  [5]
 LDCM0303  AC41 HCT 116 C97(0.93)  LDD0620  [5]
 LDCM0304  AC42 HCT 116 C97(1.24)  LDD0621  [5]
 LDCM0305  AC43 HCT 116 C97(1.22)  LDD0622  [5]
 LDCM0306  AC44 HCT 116 C97(1.30)  LDD0623  [5]
 LDCM0307  AC45 HCT 116 C97(1.20)  LDD0624  [5]
 LDCM0308  AC46 HCT 116 C97(1.07)  LDD0625  [5]
 LDCM0309  AC47 HCT 116 C97(1.01)  LDD0626  [5]
 LDCM0310  AC48 HCT 116 C97(1.07)  LDD0627  [5]
 LDCM0311  AC49 HCT 116 C97(1.35)  LDD0628  [5]
 LDCM0312  AC5 HCT 116 C97(1.21)  LDD0629  [5]
 LDCM0313  AC50 HCT 116 C97(1.12)  LDD0630  [5]
 LDCM0314  AC51 HCT 116 C97(0.93)  LDD0631  [5]
 LDCM0315  AC52 HCT 116 C97(1.06)  LDD0632  [5]
 LDCM0316  AC53 HCT 116 C97(1.23)  LDD0633  [5]
 LDCM0317  AC54 HCT 116 C97(1.03)  LDD0634  [5]
 LDCM0318  AC55 HCT 116 C97(1.15)  LDD0635  [5]
 LDCM0319  AC56 HCT 116 C97(1.56)  LDD0636  [5]
 LDCM0320  AC57 HCT 116 C97(1.45)  LDD0637  [5]
 LDCM0321  AC58 HCT 116 C97(1.69)  LDD0638  [5]
 LDCM0322  AC59 HCT 116 C97(1.57)  LDD0639  [5]
 LDCM0323  AC6 HCT 116 C97(1.30)  LDD0640  [5]
 LDCM0324  AC60 HCT 116 C97(1.78)  LDD0641  [5]
 LDCM0325  AC61 HCT 116 C97(1.62)  LDD0642  [5]
 LDCM0326  AC62 HCT 116 C97(1.89)  LDD0643  [5]
 LDCM0327  AC63 HCT 116 C97(1.83)  LDD0644  [5]
 LDCM0328  AC64 HCT 116 C97(1.62)  LDD0645  [5]
 LDCM0329  AC65 HCT 116 C97(1.98)  LDD0646  [5]
 LDCM0330  AC66 HCT 116 C97(1.90)  LDD0647  [5]
 LDCM0331  AC67 HCT 116 C97(2.29)  LDD0648  [5]
 LDCM0332  AC68 HCT 116 C97(1.21)  LDD0649  [5]
 LDCM0333  AC69 HCT 116 C97(1.11)  LDD0650  [5]
 LDCM0334  AC7 HCT 116 C97(1.02)  LDD0651  [5]
 LDCM0335  AC70 HCT 116 C97(1.30)  LDD0652  [5]
 LDCM0336  AC71 HCT 116 C97(1.18)  LDD0653  [5]
 LDCM0337  AC72 HCT 116 C97(1.39)  LDD0654  [5]
 LDCM0338  AC73 HCT 116 C97(1.71)  LDD0655  [5]
 LDCM0339  AC74 HCT 116 C97(1.80)  LDD0656  [5]
 LDCM0340  AC75 HCT 116 C97(2.26)  LDD0657  [5]
 LDCM0341  AC76 HCT 116 C97(1.34)  LDD0658  [5]
 LDCM0342  AC77 HCT 116 C97(1.29)  LDD0659  [5]
 LDCM0343  AC78 HCT 116 C97(1.27)  LDD0660  [5]
 LDCM0344  AC79 HCT 116 C97(1.25)  LDD0661  [5]
 LDCM0345  AC8 HCT 116 C97(1.18)  LDD0662  [5]
 LDCM0346  AC80 HCT 116 C97(1.20)  LDD0663  [5]
 LDCM0347  AC81 HCT 116 C97(0.98)  LDD0664  [5]
 LDCM0348  AC82 HCT 116 C97(1.78)  LDD0665  [5]
 LDCM0349  AC83 HCT 116 C97(1.20)  LDD0666  [5]
 LDCM0350  AC84 HCT 116 C97(1.14)  LDD0667  [5]
 LDCM0351  AC85 HCT 116 C97(1.31)  LDD0668  [5]
 LDCM0352  AC86 HCT 116 C97(1.36)  LDD0669  [5]
 LDCM0353  AC87 HCT 116 C97(1.19)  LDD0670  [5]
 LDCM0354  AC88 HCT 116 C97(1.27)  LDD0671  [5]
 LDCM0355  AC89 HCT 116 C97(1.37)  LDD0672  [5]
 LDCM0357  AC90 HCT 116 C97(1.26)  LDD0674  [5]
 LDCM0358  AC91 HCT 116 C97(1.16)  LDD0675  [5]
 LDCM0359  AC92 HCT 116 C97(1.27)  LDD0676  [5]
 LDCM0360  AC93 HCT 116 C97(1.25)  LDD0677  [5]
 LDCM0361  AC94 HCT 116 C97(1.29)  LDD0678  [5]
 LDCM0362  AC95 HCT 116 C97(1.27)  LDD0679  [5]
 LDCM0363  AC96 HCT 116 C97(1.12)  LDD0680  [5]
 LDCM0364  AC97 HCT 116 C97(1.29)  LDD0681  [5]
 LDCM0365  AC98 HCT 116 C97(1.51)  LDD0682  [5]
 LDCM0366  AC99 HCT 116 C97(1.06)  LDD0683  [5]
 LDCM0248  AKOS034007472 HCT 116 C97(1.10)  LDD0565  [5]
 LDCM0356  AKOS034007680 HCT 116 C97(1.14)  LDD0673  [5]
 LDCM0275  AKOS034007705 HCT 116 C97(1.73)  LDD0592  [5]
 LDCM0156  Aniline NCI-H1299 13.29  LDD0403  [1]
 LDCM0020  ARS-1620 HCC44 C97(1.10)  LDD2171  [5]
 LDCM0108  Chloroacetamide HeLa H209(0.00); H206(0.00)  LDD0222  [14]
 LDCM0367  CL1 HCT 116 C97(1.13)  LDD0684  [5]
 LDCM0368  CL10 HCT 116 C97(1.34)  LDD0685  [5]
 LDCM0369  CL100 HCT 116 C97(1.27)  LDD0686  [5]
 LDCM0370  CL101 HCT 116 C97(1.15)  LDD0687  [5]
 LDCM0371  CL102 HCT 116 C97(0.89)  LDD0688  [5]
 LDCM0372  CL103 HCT 116 C97(0.95)  LDD0689  [5]
 LDCM0373  CL104 HCT 116 C97(0.96)  LDD0690  [5]
 LDCM0374  CL105 HCT 116 C97(1.25)  LDD0691  [5]
 LDCM0375  CL106 HCT 116 C97(1.55)  LDD0692  [5]
 LDCM0376  CL107 HCT 116 C97(1.38)  LDD0693  [5]
 LDCM0377  CL108 HCT 116 C97(1.37)  LDD0694  [5]
 LDCM0378  CL109 HCT 116 C97(1.21)  LDD0695  [5]
 LDCM0379  CL11 HCT 116 C97(1.42)  LDD0696  [5]
 LDCM0380  CL110 HCT 116 C97(1.31)  LDD0697  [5]
 LDCM0381  CL111 HCT 116 C97(1.08)  LDD0698  [5]
 LDCM0382  CL112 HCT 116 C97(0.82)  LDD0699  [5]
 LDCM0383  CL113 HCT 116 C97(1.07)  LDD0700  [5]
 LDCM0384  CL114 HCT 116 C97(0.95)  LDD0701  [5]
 LDCM0385  CL115 HCT 116 C97(1.04)  LDD0702  [5]
 LDCM0386  CL116 HCT 116 C97(1.02)  LDD0703  [5]
 LDCM0387  CL117 HCT 116 C97(1.55)  LDD0704  [5]
 LDCM0388  CL118 HCT 116 C97(1.17)  LDD0705  [5]
 LDCM0389  CL119 HCT 116 C97(1.12)  LDD0706  [5]
 LDCM0390  CL12 HCT 116 C97(1.50)  LDD0707  [5]
 LDCM0391  CL120 HCT 116 C97(0.96)  LDD0708  [5]
 LDCM0392  CL121 HCT 116 C97(0.88)  LDD0709  [5]
 LDCM0393  CL122 HCT 116 C97(0.99)  LDD0710  [5]
 LDCM0394  CL123 HCT 116 C97(1.06)  LDD0711  [5]
 LDCM0395  CL124 HCT 116 C97(1.19)  LDD0712  [5]
 LDCM0396  CL125 HCT 116 C97(1.41)  LDD0713  [5]
 LDCM0397  CL126 HCT 116 C97(1.20)  LDD0714  [5]
 LDCM0398  CL127 HCT 116 C97(1.18)  LDD0715  [5]
 LDCM0399  CL128 HCT 116 C97(1.85)  LDD0716  [5]
 LDCM0400  CL13 HCT 116 C97(1.27)  LDD0717  [5]
 LDCM0401  CL14 HCT 116 C97(1.11)  LDD0718  [5]
 LDCM0402  CL15 HCT 116 C97(1.24)  LDD0719  [5]
 LDCM0403  CL16 HCT 116 C97(0.97)  LDD0720  [5]
 LDCM0404  CL17 HCT 116 C97(1.07)  LDD0721  [5]
 LDCM0405  CL18 HCT 116 C97(1.10)  LDD0722  [5]
 LDCM0406  CL19 HCT 116 C97(1.07)  LDD0723  [5]
 LDCM0407  CL2 HCT 116 C97(0.90)  LDD0724  [5]
 LDCM0408  CL20 HCT 116 C97(1.21)  LDD0725  [5]
 LDCM0409  CL21 HCT 116 C97(1.30)  LDD0726  [5]
 LDCM0410  CL22 HCT 116 C97(1.43)  LDD0727  [5]
 LDCM0411  CL23 HCT 116 C97(1.04)  LDD0728  [5]
 LDCM0412  CL24 HCT 116 C97(1.22)  LDD0729  [5]
 LDCM0413  CL25 HCT 116 C97(1.19)  LDD0730  [5]
 LDCM0414  CL26 HCT 116 C97(1.11)  LDD0731  [5]
 LDCM0415  CL27 HCT 116 C97(1.07)  LDD0732  [5]
 LDCM0416  CL28 HCT 116 C97(1.19)  LDD0733  [5]
 LDCM0417  CL29 HCT 116 C97(1.14)  LDD0734  [5]
 LDCM0418  CL3 HCT 116 C97(1.06)  LDD0735  [5]
 LDCM0419  CL30 HCT 116 C97(1.01)  LDD0736  [5]
 LDCM0420  CL31 HCT 116 C97(1.08)  LDD0737  [5]
 LDCM0421  CL32 HCT 116 C97(1.14)  LDD0738  [5]
 LDCM0422  CL33 HCT 116 C97(1.19)  LDD0739  [5]
 LDCM0423  CL34 HCT 116 C97(1.26)  LDD0740  [5]
 LDCM0424  CL35 HCT 116 C97(1.29)  LDD0741  [5]
 LDCM0425  CL36 HCT 116 C97(1.22)  LDD0742  [5]
 LDCM0426  CL37 HCT 116 C97(1.35)  LDD0743  [5]
 LDCM0428  CL39 HCT 116 C97(1.35)  LDD0745  [5]
 LDCM0429  CL4 HCT 116 C97(1.09)  LDD0746  [5]
 LDCM0430  CL40 HCT 116 C97(1.16)  LDD0747  [5]
 LDCM0431  CL41 HCT 116 C97(1.15)  LDD0748  [5]
 LDCM0432  CL42 HCT 116 C97(1.54)  LDD0749  [5]
 LDCM0433  CL43 HCT 116 C97(1.39)  LDD0750  [5]
 LDCM0434  CL44 HCT 116 C97(1.27)  LDD0751  [5]
 LDCM0435  CL45 HCT 116 C97(1.33)  LDD0752  [5]
 LDCM0436  CL46 HCT 116 C97(1.07)  LDD0753  [5]
 LDCM0437  CL47 HCT 116 C97(0.72)  LDD0754  [5]
 LDCM0438  CL48 HCT 116 C97(0.88)  LDD0755  [5]
 LDCM0439  CL49 HCT 116 C97(1.19)  LDD0756  [5]
 LDCM0440  CL5 HCT 116 C97(1.11)  LDD0757  [5]
 LDCM0441  CL50 HCT 116 C97(1.15)  LDD0758  [5]
 LDCM0442  CL51 HCT 116 C97(1.19)  LDD0759  [5]
 LDCM0443  CL52 HCT 116 C97(1.29)  LDD0760  [5]
 LDCM0444  CL53 HCT 116 C97(1.04)  LDD0761  [5]
 LDCM0445  CL54 HCT 116 C97(1.10)  LDD0762  [5]
 LDCM0446  CL55 HCT 116 C97(0.97)  LDD0763  [5]
 LDCM0447  CL56 HCT 116 C97(1.10)  LDD0764  [5]
 LDCM0448  CL57 HCT 116 C97(0.87)  LDD0765  [5]
 LDCM0449  CL58 HCT 116 C97(1.00)  LDD0766  [5]
 LDCM0450  CL59 HCT 116 C97(1.07)  LDD0767  [5]
 LDCM0451  CL6 HCT 116 C97(1.22)  LDD0768  [5]
 LDCM0452  CL60 HCT 116 C97(0.92)  LDD0769  [5]
 LDCM0453  CL61 HCT 116 C97(1.11)  LDD0770  [5]
 LDCM0454  CL62 HCT 116 C97(1.09)  LDD0771  [5]
 LDCM0455  CL63 HCT 116 C97(1.11)  LDD0772  [5]
 LDCM0456  CL64 HCT 116 C97(1.26)  LDD0773  [5]
 LDCM0457  CL65 HCT 116 C97(1.15)  LDD0774  [5]
 LDCM0458  CL66 HCT 116 C97(1.21)  LDD0775  [5]
 LDCM0459  CL67 HCT 116 C97(1.16)  LDD0776  [5]
 LDCM0460  CL68 HCT 116 C97(1.10)  LDD0777  [5]
 LDCM0461  CL69 HCT 116 C97(1.20)  LDD0778  [5]
 LDCM0462  CL7 HCT 116 C97(1.31)  LDD0779  [5]
 LDCM0463  CL70 HCT 116 C97(1.13)  LDD0780  [5]
 LDCM0464  CL71 HCT 116 C97(1.22)  LDD0781  [5]
 LDCM0465  CL72 HCT 116 C97(1.07)  LDD0782  [5]
 LDCM0466  CL73 HCT 116 C97(1.15)  LDD0783  [5]
 LDCM0467  CL74 HCT 116 C97(1.19)  LDD0784  [5]
 LDCM0469  CL76 HCT 116 C97(1.09)  LDD0786  [5]
 LDCM0470  CL77 HCT 116 C97(1.05)  LDD0787  [5]
 LDCM0471  CL78 HCT 116 C97(1.12)  LDD0788  [5]
 LDCM0472  CL79 HCT 116 C97(1.33)  LDD0789  [5]
 LDCM0473  CL8 HCT 116 C97(1.64)  LDD0790  [5]
 LDCM0474  CL80 HCT 116 C97(1.11)  LDD0791  [5]
 LDCM0475  CL81 HCT 116 C97(1.12)  LDD0792  [5]
 LDCM0476  CL82 HCT 116 C97(1.36)  LDD0793  [5]
 LDCM0477  CL83 HCT 116 C97(1.40)  LDD0794  [5]
 LDCM0478  CL84 HCT 116 C97(1.53)  LDD0795  [5]
 LDCM0479  CL85 HCT 116 C97(1.15)  LDD0796  [5]
 LDCM0480  CL86 HCT 116 C97(1.10)  LDD0797  [5]
 LDCM0481  CL87 HCT 116 C97(1.13)  LDD0798  [5]
 LDCM0482  CL88 HCT 116 C97(1.21)  LDD0799  [5]
 LDCM0483  CL89 HCT 116 C97(1.67)  LDD0800  [5]
 LDCM0484  CL9 HCT 116 C97(1.16)  LDD0801  [5]
 LDCM0485  CL90 HCT 116 C97(1.06)  LDD0802  [5]
 LDCM0486  CL91 HCT 116 C97(1.15)  LDD0803  [5]
 LDCM0487  CL92 HCT 116 C97(1.08)  LDD0804  [5]
 LDCM0488  CL93 HCT 116 C97(1.08)  LDD0805  [5]
 LDCM0489  CL94 HCT 116 C97(1.08)  LDD0806  [5]
 LDCM0490  CL95 HCT 116 C97(1.18)  LDD0807  [5]
 LDCM0491  CL96 HCT 116 C97(1.18)  LDD0808  [5]
 LDCM0492  CL97 HCT 116 C97(1.14)  LDD0809  [5]
 LDCM0493  CL98 HCT 116 C97(1.34)  LDD0810  [5]
 LDCM0494  CL99 HCT 116 C97(1.21)  LDD0811  [5]
 LDCM0495  E2913 HEK-293T C97(1.06)  LDD1698  [19]
 LDCM0213  Electrophilic fragment 2 MDA-MB-231 C97(0.90)  LDD1702  [18]
 LDCM0175  Ethacrynic acid HeLa N.A.  LDD0440  [4]
 LDCM0625  F8 Ramos C97(1.89)  LDD2187  [20]
 LDCM0572  Fragment10 Ramos C97(1.49)  LDD2189  [20]
 LDCM0573  Fragment11 Ramos C97(0.32)  LDD2190  [20]
 LDCM0574  Fragment12 Ramos C97(0.59)  LDD2191  [20]
 LDCM0575  Fragment13 Ramos C97(0.91)  LDD2192  [20]
 LDCM0576  Fragment14 Ramos C97(0.60)  LDD2193  [20]
 LDCM0579  Fragment20 Ramos C97(0.58)  LDD2194  [20]
 LDCM0580  Fragment21 Ramos C97(0.94)  LDD2195  [20]
 LDCM0582  Fragment23 Ramos C97(0.71)  LDD2196  [20]
 LDCM0578  Fragment27 Ramos C97(0.94)  LDD2197  [20]
 LDCM0586  Fragment28 Ramos C97(0.82)  LDD2198  [20]
 LDCM0588  Fragment30 Ramos C97(1.03)  LDD2199  [20]
 LDCM0589  Fragment31 Ramos C97(0.80)  LDD2200  [20]
 LDCM0590  Fragment32 Ramos C97(0.97)  LDD2201  [20]
 LDCM0468  Fragment33 HCT 116 C97(1.13)  LDD0785  [5]
 LDCM0596  Fragment38 Ramos C97(0.63)  LDD2203  [20]
 LDCM0566  Fragment4 Ramos C97(0.79)  LDD2184  [20]
 LDCM0427  Fragment51 HCT 116 C97(1.45)  LDD0744  [5]
 LDCM0610  Fragment52 Ramos C97(0.75)  LDD2204  [20]
 LDCM0614  Fragment56 Ramos C97(0.95)  LDD2205  [20]
 LDCM0569  Fragment7 Ramos C97(1.56)  LDD2186  [20]
 LDCM0571  Fragment9 Ramos C97(0.75)  LDD2188  [20]
 LDCM0107  IAA HeLa H209(0.00); H206(0.00)  LDD0221  [14]
 LDCM0022  KB02 HCT 116 C97(1.98)  LDD0080  [5]
 LDCM0023  KB03 HCT 116 C97(1.31)  LDD0081  [5]
 LDCM0024  KB05 HCT 116 C97(1.30)  LDD0082  [5]
 LDCM0528  N-(4-bromophenyl)-2-cyano-N-phenylacetamide MDA-MB-231 C97(0.65)  LDD2121  [18]
 LDCM0109  NEM HeLa H209(0.00); H206(0.00)  LDD0223  [14]
 LDCM0499  Nucleophilic fragment 12b MDA-MB-231 C97(1.02)  LDD2092  [18]
 LDCM0501  Nucleophilic fragment 13b MDA-MB-231 C97(1.29)  LDD2094  [18]
 LDCM0505  Nucleophilic fragment 15b MDA-MB-231 C97(0.86)  LDD2098  [18]
 LDCM0506  Nucleophilic fragment 16a MDA-MB-231 C97(1.09)  LDD2099  [18]
 LDCM0507  Nucleophilic fragment 16b MDA-MB-231 C97(1.21)  LDD2100  [18]
 LDCM0511  Nucleophilic fragment 18b MDA-MB-231 C97(1.00)  LDD2104  [18]
 LDCM0512  Nucleophilic fragment 19a MDA-MB-231 C97(1.55)  LDD2105  [18]
 LDCM0513  Nucleophilic fragment 19b MDA-MB-231 C97(1.09)  LDD2106  [18]
 LDCM0514  Nucleophilic fragment 20a MDA-MB-231 C97(1.10)  LDD2107  [18]
 LDCM0515  Nucleophilic fragment 20b MDA-MB-231 C97(0.94)  LDD2108  [18]
 LDCM0516  Nucleophilic fragment 21a MDA-MB-231 C97(0.83)  LDD2109  [18]
 LDCM0518  Nucleophilic fragment 22a MDA-MB-231 C97(1.11)  LDD2111  [18]
 LDCM0521  Nucleophilic fragment 23b MDA-MB-231 C97(0.90)  LDD2114  [18]
 LDCM0525  Nucleophilic fragment 25b MDA-MB-231 C97(1.39)  LDD2118  [18]
 LDCM0529  Nucleophilic fragment 27b MDA-MB-231 C97(0.60)  LDD2122  [18]
 LDCM0531  Nucleophilic fragment 28b MDA-MB-231 C97(0.51)  LDD2124  [18]
 LDCM0533  Nucleophilic fragment 29b MDA-MB-231 C97(0.40)  LDD2126  [18]
 LDCM0534  Nucleophilic fragment 30a MDA-MB-231 C97(1.20)  LDD2127  [18]
 LDCM0543  Nucleophilic fragment 38 MDA-MB-231 C97(1.27)  LDD2136  [18]
 LDCM0544  Nucleophilic fragment 39 MDA-MB-231 C97(1.18)  LDD2137  [18]
 LDCM0211  Nucleophilic fragment 3b MDA-MB-231 C97(1.65)  LDD1700  [18]
 LDCM0546  Nucleophilic fragment 40 MDA-MB-231 C97(0.95)  LDD2140  [18]
 LDCM0547  Nucleophilic fragment 41 MDA-MB-231 C97(0.85)  LDD2141  [18]
 LDCM0549  Nucleophilic fragment 43 MDA-MB-231 C97(0.73)  LDD2143  [18]
 LDCM0550  Nucleophilic fragment 5a MDA-MB-231 C97(2.13)  LDD2144  [18]
 LDCM0555  Nucleophilic fragment 7b MDA-MB-231 C97(0.43)  LDD2149  [18]
 LDCM0556  Nucleophilic fragment 8a MDA-MB-231 C97(0.65)  LDD2150  [18]
 LDCM0627  NUDT7-COV-1 HEK-293T C97(0.58)  LDD2206  [21]
 LDCM0628  OTUB2-COV-1 HEK-293T C97(0.63)  LDD2207  [21]
 LDCM0021  THZ1 HCT 116 C97(1.10)  LDD2173  [5]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 6 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Exosome complex component CSL4 (EXOSC1) CSL4 family Q9Y3B2
DNA polymerase epsilon subunit 2 (POLE2) DNA polymerase epsilon subunit B family P56282
Exosome complex component RRP42 (EXOSC7) RNase PH family Q15024
Exosome complex component RRP45 (EXOSC9) RNase PH family Q06265
E3 ubiquitin-protein ligase LNX (LNX1) . Q8TBB1
Exosome complex component 10 (EXOSC10) . Q01780
Transporter and channel
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Syntenin-1 (SDCBP) . O00560
Other
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Exosome complex component RRP4 (EXOSC2) RRP4 family Q13868
Exosome complex component RRP40 (EXOSC3) RRP40 family Q9NQT5

References

1 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
2 An Azo Coupling-Based Chemoproteomic Approach to Systematically Profile the Tyrosine Reactivity in the Human Proteome. Anal Chem. 2021 Jul 27;93(29):10334-10342. doi: 10.1021/acs.analchem.1c01935. Epub 2021 Jul 12.
3 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
4 Chemoproteomic Profiling Reveals Ethacrynic Acid Targets Adenine Nucleotide Translocases to Impair Mitochondrial Function. Mol Pharm. 2018 Jun 4;15(6):2413-2422. doi: 10.1021/acs.molpharmaceut.8b00250. Epub 2018 May 15.
5 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
6 Targeted Proteomic Approaches for Proteome-Wide Characterizations of the AMP-Binding Capacities of Kinases. J Proteome Res. 2022 Aug 5;21(8):2063-2070. doi: 10.1021/acs.jproteome.2c00225. Epub 2022 Jul 12.
7 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
8 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
9 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
10 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
11 Multiplexed CuAAC Suzuki-Miyaura Labeling for Tandem Activity-Based Chemoproteomic Profiling. Anal Chem. 2021 Feb 2;93(4):2610-2618. doi: 10.1021/acs.analchem.0c04726. Epub 2021 Jan 20.
Mass spectrometry data entry: PXD022279
12 Solid Phase Synthesis of Fluorosulfate Containing Macrocycles for Chemoproteomic Workflows. bioRxiv [Preprint]. 2023 Feb 18:2023.02.17.529022. doi: 10.1101/2023.02.17.529022.
Mass spectrometry data entry: PXD039931
13 DFT-Guided Discovery of Ethynyl-Triazolyl-Phosphinates as Modular Electrophiles for Chemoselective Cysteine Bioconjugation and Profiling. Angew Chem Int Ed Engl. 2022 Oct 10;61(41):e202205348. doi: 10.1002/anie.202205348. Epub 2022 Aug 22.
Mass spectrometry data entry: PXD033004
14 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
15 Chemoproteomic profiling of targets of lipid-derived electrophiles by bioorthogonal aminooxy probe. Redox Biol. 2017 Aug;12:712-718. doi: 10.1016/j.redox.2017.04.001. Epub 2017 Apr 5.
16 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
17 Differently Tagged Probes for Protein Profiling of Mitochondria. Chembiochem. 2019 May 2;20(9):1155-1160. doi: 10.1002/cbic.201800735. Epub 2019 Mar 26.
18 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
19 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
20 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578
21 Rapid Covalent-Probe Discovery by Electrophile-Fragment Screening. J Am Chem Soc. 2019 Jun 5;141(22):8951-8968. doi: 10.1021/jacs.9b02822. Epub 2019 May 22.