General Information of Target

Target ID LDTP13142
Target Name Vacuolar protein sorting-associated protein 29 (VPS29)
Gene Name VPS29
Gene ID 51699
Synonyms
Vacuolar protein sorting-associated protein 29; hVPS29; PEP11 homolog; Vesicle protein sorting 29
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
DSRC
Target Bioclass
Transporter and channel
Family
VPS29 family
Subcellular location
Cytoplasm
Function
Acts as a component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. The recruitment of the CSC to the endosomal membrane involves RAB7A and SNX3. The SNX-BAR retromer mediates retrograde transport of cargo proteins from endosomes to the trans-Golgi network (TGN) and is involved in endosome-to-plasma membrane transport for cargo protein recycling. The SNX3-retromer mediates the retrograde endosome-to-TGN transport of WLS distinct from the SNX-BAR retromer pathway. The SNX27-retromer is believed to be involved in endosome-to-plasma membrane trafficking and recycling of a broad spectrum of cargo proteins. The CSC seems to act as recruitment hub for other proteins, such as the WASH complex and TBC1D5. Required to regulate transcytosis of the polymeric immunoglobulin receptor (pIgR-pIgA). Acts also as component of the retriever complex. The retriever complex is a heterotrimeric complex related to retromer cargo-selective complex (CSC) and essential for retromer-independent retrieval and recycling of numerous cargos such as integrin alpha-5/beta-1 (ITGA5:ITGB1). In the endosomes, retriever complex drives the retrieval and recycling of NxxY-motif-containing cargo proteins by coupling to SNX17, a cargo essential for the homeostatic maintenance of numerous cell surface proteins associated with processes that include cell migration, cell adhesion, nutrient supply and cell signaling. The recruitment of the retriever complex to the endosomal membrane involves CCC and WASH complexes. Involved in GLUT1 endosome-to-plasma membrane trafficking; the function is dependent of association with ANKRD27.; (Microbial infection) The heterotrimeric retromer cargo-selective complex (CSC) mediates the exit of human papillomavirus from the early endosome and the delivery to the Golgi apparatus.
Uniprot ID
Q9UBQ0
Ensemble ID
ENST00000360579.11
HGNC ID
HGNC:14340

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 20 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
m-APA
 Probe Info 
7.18  LDD0402  [1]
C-Sul
 Probe Info 
2.37  LDD0066  [2]
STPyne
 Probe Info 
K21(1.61); K24(9.81)  LDD0277  [3]
IPM
 Probe Info 
C36(0.00); C41(0.00)  LDD0241  [4]
Probe 1
 Probe Info 
Y46(71.67); Y69(219.40)  LDD3495  [5]
DBIA
 Probe Info 
C19(1.30)  LDD3312  [6]
BTD
 Probe Info 
C36(1.53)  LDD1700  [7]
HHS-475
 Probe Info 
Y69(0.77); Y46(0.83)  LDD0264  [8]
HHS-465
 Probe Info 
Y46(10.00)  LDD2237  [9]
5E-2FA
 Probe Info 
N.A.  LDD2235  [10]
4-Iodoacetamidophenylacetylene
 Probe Info 
C15(0.00); C41(0.00); C36(0.00)  LDD0038  [11]
IA-alkyne
 Probe Info 
N.A.  LDD0032  [12]
Lodoacetamide azide
 Probe Info 
C15(0.00); C41(0.00); C36(0.00)  LDD0037  [11]
TFBX
 Probe Info 
N.A.  LDD0148  [13]
Ox-W18
 Probe Info 
N.A.  LDD2175  [14]
1c-yne
 Probe Info 
N.A.  LDD0228  [15]
Acrolein
 Probe Info 
H33(0.00); H57(0.00)  LDD0217  [16]
W1
 Probe Info 
C36(0.00); C41(0.00)  LDD0236  [4]
AOyne
 Probe Info 
6.10  LDD0443  [17]
NAIA_5
 Probe Info 
C15(0.00); C41(0.00); C36(0.00)  LDD2223  [18]
PAL-AfBPP Probe
Click To Hide/Show 4 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C191
 Probe Info 
9.78  LDD1868  [19]
C193
 Probe Info 
5.54  LDD1869  [19]
C388
 Probe Info 
51.27  LDD2047  [19]
C399
 Probe Info 
12.04  LDD2058  [19]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0519  1-(6-methoxy-3,4-dihydroquinolin-1(2H)-yl)-2-nitroethan-1-one MDA-MB-231 C36(1.57)  LDD2112  [7]
 LDCM0537  2-Cyano-N,N-dimethylacetamide MDA-MB-231 C41(1.46)  LDD2130  [7]
 LDCM0524  2-Cyano-N-(2-morpholin-4-yl-ethyl)-acetamide MDA-MB-231 C41(0.77)  LDD2117  [7]
 LDCM0558  2-Cyano-N-phenylacetamide MDA-MB-231 C36(1.10); C41(0.98)  LDD2152  [7]
 LDCM0510  3-(4-(Hydroxydiphenylmethyl)piperidin-1-yl)-3-oxopropanenitrile MDA-MB-231 C41(1.02)  LDD2103  [7]
 LDCM0214  AC1 HEK-293T C36(1.05)  LDD1507  [20]
 LDCM0215  AC10 HEK-293T C41(0.85); C36(1.11)  LDD1508  [20]
 LDCM0226  AC11 HEK-293T C41(0.98); C36(0.99)  LDD1509  [20]
 LDCM0237  AC12 HEK-293T C41(0.91); C36(1.05)  LDD1510  [20]
 LDCM0259  AC14 HEK-293T C15(1.14); C36(0.94)  LDD1512  [20]
 LDCM0270  AC15 HEK-293T C36(1.03)  LDD1513  [20]
 LDCM0276  AC17 HEK-293T C36(1.00)  LDD1515  [20]
 LDCM0277  AC18 HEK-293T C41(1.02); C36(1.09)  LDD1516  [20]
 LDCM0278  AC19 HEK-293T C41(0.79); C36(0.87)  LDD1517  [20]
 LDCM0279  AC2 HEK-293T C41(0.91); C36(1.03)  LDD1518  [20]
 LDCM0280  AC20 HEK-293T C41(0.98); C36(0.99)  LDD1519  [20]
 LDCM0281  AC21 HEK-293T C41(1.04); C36(0.97)  LDD1520  [20]
 LDCM0282  AC22 HEK-293T C15(1.00); C36(0.92)  LDD1521  [20]
 LDCM0283  AC23 HEK-293T C36(0.94)  LDD1522  [20]
 LDCM0284  AC24 HEK-293T C15(1.09); C41(1.09); C36(1.06)  LDD1523  [20]
 LDCM0285  AC25 HEK-293T C36(0.98)  LDD1524  [20]
 LDCM0286  AC26 HEK-293T C41(0.90); C36(1.15)  LDD1525  [20]
 LDCM0287  AC27 HEK-293T C41(1.04); C36(1.02)  LDD1526  [20]
 LDCM0288  AC28 HEK-293T C41(0.87); C36(1.04)  LDD1527  [20]
 LDCM0289  AC29 HEK-293T C41(0.88); C36(1.03)  LDD1528  [20]
 LDCM0290  AC3 HEK-293T C41(1.06); C36(1.03)  LDD1529  [20]
 LDCM0291  AC30 HEK-293T C15(1.05); C36(0.99)  LDD1530  [20]
 LDCM0292  AC31 HEK-293T C36(0.93)  LDD1531  [20]
 LDCM0293  AC32 HEK-293T C15(1.29); C41(0.97); C36(1.02)  LDD1532  [20]
 LDCM0294  AC33 HEK-293T C36(1.17)  LDD1533  [20]
 LDCM0295  AC34 HEK-293T C41(1.01); C36(1.07)  LDD1534  [20]
 LDCM0296  AC35 HEK-293T C41(1.00); C36(1.01)  LDD1535  [20]
 LDCM0297  AC36 HEK-293T C41(0.93); C36(1.02)  LDD1536  [20]
 LDCM0298  AC37 HEK-293T C41(1.02); C36(1.09)  LDD1537  [20]
 LDCM0299  AC38 HEK-293T C15(1.15); C36(0.98)  LDD1538  [20]
 LDCM0300  AC39 HEK-293T C36(0.93)  LDD1539  [20]
 LDCM0301  AC4 HEK-293T C41(0.99); C36(0.99)  LDD1540  [20]
 LDCM0302  AC40 HEK-293T C15(1.28); C41(0.94); C36(1.18)  LDD1541  [20]
 LDCM0303  AC41 HEK-293T C36(1.08)  LDD1542  [20]
 LDCM0304  AC42 HEK-293T C41(0.79); C36(1.16)  LDD1543  [20]
 LDCM0305  AC43 HEK-293T C41(0.88); C36(0.99)  LDD1544  [20]
 LDCM0306  AC44 HEK-293T C41(0.92); C36(1.03)  LDD1545  [20]
 LDCM0307  AC45 HEK-293T C41(0.92); C36(0.98)  LDD1546  [20]
 LDCM0308  AC46 HEK-293T C15(1.19); C36(0.97)  LDD1547  [20]
 LDCM0309  AC47 HEK-293T C36(0.89)  LDD1548  [20]
 LDCM0310  AC48 HEK-293T C15(1.30); C41(0.82); C36(0.95)  LDD1549  [20]
 LDCM0311  AC49 HEK-293T C36(1.01)  LDD1550  [20]
 LDCM0312  AC5 HEK-293T C41(0.83); C36(0.96)  LDD1551  [20]
 LDCM0313  AC50 HEK-293T C41(0.91); C36(0.94)  LDD1552  [20]
 LDCM0314  AC51 HEK-293T C41(1.00); C36(0.87)  LDD1553  [20]
 LDCM0315  AC52 HEK-293T C41(1.04); C36(0.99)  LDD1554  [20]
 LDCM0316  AC53 HEK-293T C41(0.87); C36(0.99)  LDD1555  [20]
 LDCM0317  AC54 HEK-293T C15(1.24); C36(0.89)  LDD1556  [20]
 LDCM0318  AC55 HEK-293T C36(1.00)  LDD1557  [20]
 LDCM0319  AC56 HEK-293T C15(1.08); C41(0.95); C36(0.99)  LDD1558  [20]
 LDCM0320  AC57 HEK-293T C36(1.06)  LDD1559  [20]
 LDCM0321  AC58 HEK-293T C41(0.92); C36(1.06)  LDD1560  [20]
 LDCM0322  AC59 HEK-293T C41(1.02); C36(1.05)  LDD1561  [20]
 LDCM0323  AC6 HEK-293T C15(0.96); C36(1.06)  LDD1562  [20]
 LDCM0324  AC60 HEK-293T C41(0.97); C36(1.01)  LDD1563  [20]
 LDCM0325  AC61 HEK-293T C41(0.94); C36(1.06)  LDD1564  [20]
 LDCM0326  AC62 HEK-293T C15(1.07); C36(1.01)  LDD1565  [20]
 LDCM0327  AC63 HEK-293T C36(1.08)  LDD1566  [20]
 LDCM0328  AC64 HEK-293T C15(1.03); C41(0.91); C36(1.17)  LDD1567  [20]
 LDCM0334  AC7 HEK-293T C36(1.18)  LDD1568  [20]
 LDCM0345  AC8 HEK-293T C15(1.00); C41(0.89); C36(1.19)  LDD1569  [20]
 LDCM0520  AKOS000195272 MDA-MB-231 C36(0.83)  LDD2113  [7]
 LDCM0248  AKOS034007472 HEK-293T C41(0.93); C36(1.09)  LDD1511  [20]
 LDCM0356  AKOS034007680 HEK-293T C36(0.99)  LDD1570  [20]
 LDCM0275  AKOS034007705 HEK-293T C15(1.28); C41(0.79); C36(0.98)  LDD1514  [20]
 LDCM0156  Aniline NCI-H1299 10.47  LDD0403  [1]
 LDCM0108  Chloroacetamide HeLa H57(0.00); H33(0.00); C41(0.00)  LDD0222  [16]
 LDCM0367  CL1 HEK-293T C41(1.00); C36(1.02)  LDD1571  [20]
 LDCM0368  CL10 HEK-293T C15(1.15); C36(1.18)  LDD1572  [20]
 LDCM0369  CL100 HEK-293T C41(0.97); C36(1.05)  LDD1573  [20]
 LDCM0370  CL101 HEK-293T C41(0.95); C36(0.91)  LDD1574  [20]
 LDCM0371  CL102 HEK-293T C15(1.10); C41(0.91); C36(1.04)  LDD1575  [20]
 LDCM0372  CL103 HEK-293T C15(1.19); C36(1.07)  LDD1576  [20]
 LDCM0373  CL104 HEK-293T C41(0.97); C36(1.05)  LDD1577  [20]
 LDCM0374  CL105 HEK-293T C41(0.92); C36(0.93)  LDD1578  [20]
 LDCM0375  CL106 HEK-293T C15(1.08); C41(0.97); C36(1.19)  LDD1579  [20]
 LDCM0376  CL107 HEK-293T C15(1.24); C36(1.04)  LDD1580  [20]
 LDCM0377  CL108 HEK-293T C41(0.91); C36(1.14)  LDD1581  [20]
 LDCM0378  CL109 HEK-293T C41(0.80); C36(1.02)  LDD1582  [20]
 LDCM0379  CL11 HEK-293T C36(1.14)  LDD1583  [20]
 LDCM0380  CL110 HEK-293T C15(1.23); C41(0.90); C36(0.98)  LDD1584  [20]
 LDCM0381  CL111 HEK-293T C15(1.08); C36(1.01)  LDD1585  [20]
 LDCM0382  CL112 HEK-293T C41(0.94); C36(0.97)  LDD1586  [20]
 LDCM0383  CL113 HEK-293T C41(0.94); C36(0.88)  LDD1587  [20]
 LDCM0384  CL114 HEK-293T C15(1.01); C41(0.91); C36(1.13)  LDD1588  [20]
 LDCM0385  CL115 HEK-293T C15(1.05); C36(1.06)  LDD1589  [20]
 LDCM0386  CL116 HEK-293T C41(1.03); C36(0.99)  LDD1590  [20]
 LDCM0387  CL117 HEK-293T C41(0.99); C36(0.98)  LDD1591  [20]
 LDCM0388  CL118 HEK-293T C15(1.23); C41(0.94); C36(1.06)  LDD1592  [20]
 LDCM0389  CL119 HEK-293T C15(1.18); C36(1.05)  LDD1593  [20]
 LDCM0390  CL12 HEK-293T C15(1.07); C41(0.85); C36(1.13)  LDD1594  [20]
 LDCM0391  CL120 HEK-293T C41(0.92); C36(1.00)  LDD1595  [20]
 LDCM0392  CL121 HEK-293T C41(0.93); C36(1.02)  LDD1596  [20]
 LDCM0393  CL122 HEK-293T C15(1.10); C41(0.86); C36(1.01)  LDD1597  [20]
 LDCM0394  CL123 HEK-293T C15(1.14); C36(1.13)  LDD1598  [20]
 LDCM0395  CL124 HEK-293T C41(0.85); C36(0.97)  LDD1599  [20]
 LDCM0396  CL125 HEK-293T C41(0.98); C36(1.06)  LDD1600  [20]
 LDCM0397  CL126 HEK-293T C15(1.16); C41(0.97); C36(1.20)  LDD1601  [20]
 LDCM0398  CL127 HEK-293T C15(1.23); C36(1.08)  LDD1602  [20]
 LDCM0399  CL128 HEK-293T C41(0.95); C36(1.07)  LDD1603  [20]
 LDCM0400  CL13 HEK-293T C41(0.89); C36(0.95)  LDD1604  [20]
 LDCM0401  CL14 HEK-293T C15(1.04); C41(1.03); C36(1.24)  LDD1605  [20]
 LDCM0402  CL15 HEK-293T C15(1.35); C36(1.13)  LDD1606  [20]
 LDCM0403  CL16 HEK-293T C41(1.00); C36(1.11)  LDD1607  [20]
 LDCM0404  CL17 HEK-293T C36(1.03)  LDD1608  [20]
 LDCM0405  CL18 HEK-293T C41(0.86); C36(1.15)  LDD1609  [20]
 LDCM0406  CL19 HEK-293T C41(0.95); C36(1.11)  LDD1610  [20]
 LDCM0407  CL2 HEK-293T C15(0.94); C41(0.97); C36(1.06)  LDD1611  [20]
 LDCM0408  CL20 HEK-293T C41(0.81); C36(1.04)  LDD1612  [20]
 LDCM0409  CL21 HEK-293T C41(0.82); C36(1.15)  LDD1613  [20]
 LDCM0410  CL22 HEK-293T C15(1.24); C36(1.12)  LDD1614  [20]
 LDCM0411  CL23 HEK-293T C36(1.14)  LDD1615  [20]
 LDCM0412  CL24 HEK-293T C15(0.89); C41(0.93); C36(1.09)  LDD1616  [20]
 LDCM0413  CL25 HEK-293T C41(0.94); C36(0.89)  LDD1617  [20]
 LDCM0414  CL26 HEK-293T C15(1.08); C41(1.00); C36(1.19)  LDD1618  [20]
 LDCM0415  CL27 HEK-293T C15(1.22); C36(1.06)  LDD1619  [20]
 LDCM0416  CL28 HEK-293T C41(0.99); C36(0.96)  LDD1620  [20]
 LDCM0417  CL29 HEK-293T C36(1.00)  LDD1621  [20]
 LDCM0418  CL3 HEK-293T C15(1.08); C36(1.18)  LDD1622  [20]
 LDCM0419  CL30 HEK-293T C41(0.92); C36(0.99)  LDD1623  [20]
 LDCM0420  CL31 HEK-293T C41(0.94); C36(0.99)  LDD1624  [20]
 LDCM0421  CL32 HEK-293T C41(1.03); C36(1.10)  LDD1625  [20]
 LDCM0422  CL33 HEK-293T C41(0.77); C36(1.05)  LDD1626  [20]
 LDCM0423  CL34 HEK-293T C15(1.14); C36(1.17)  LDD1627  [20]
 LDCM0424  CL35 HEK-293T C36(1.09)  LDD1628  [20]
 LDCM0425  CL36 HEK-293T C15(1.11); C41(0.93); C36(1.07)  LDD1629  [20]
 LDCM0426  CL37 HEK-293T C41(1.17); C36(1.10)  LDD1630  [20]
 LDCM0428  CL39 HEK-293T C15(1.28); C36(0.99)  LDD1632  [20]
 LDCM0429  CL4 HEK-293T C41(1.03); C36(1.16)  LDD1633  [20]
 LDCM0430  CL40 HEK-293T C41(1.00); C36(1.09)  LDD1634  [20]
 LDCM0431  CL41 HEK-293T C36(1.06)  LDD1635  [20]
 LDCM0432  CL42 HEK-293T C41(0.99); C36(1.00)  LDD1636  [20]
 LDCM0433  CL43 HEK-293T C41(1.04); C36(1.04)  LDD1637  [20]
 LDCM0434  CL44 HEK-293T C41(0.88); C36(1.04)  LDD1638  [20]
 LDCM0435  CL45 HEK-293T C41(0.89); C36(1.10)  LDD1639  [20]
 LDCM0436  CL46 HEK-293T C15(1.06); C36(1.09)  LDD1640  [20]
 LDCM0437  CL47 HEK-293T C36(1.13)  LDD1641  [20]
 LDCM0438  CL48 HEK-293T C15(1.14); C41(0.99); C36(1.24)  LDD1642  [20]
 LDCM0439  CL49 HEK-293T C41(0.93); C36(1.08)  LDD1643  [20]
 LDCM0440  CL5 HEK-293T C36(0.98)  LDD1644  [20]
 LDCM0441  CL50 HEK-293T C15(1.30); C41(1.03); C36(1.12)  LDD1645  [20]
 LDCM0443  CL52 HEK-293T C41(1.11); C36(1.11)  LDD1646  [20]
 LDCM0444  CL53 HEK-293T C36(1.09)  LDD1647  [20]
 LDCM0445  CL54 HEK-293T C41(0.94); C36(1.11)  LDD1648  [20]
 LDCM0446  CL55 HEK-293T C41(0.92); C36(1.09)  LDD1649  [20]
 LDCM0447  CL56 HEK-293T C41(0.87); C36(1.10)  LDD1650  [20]
 LDCM0448  CL57 HEK-293T C41(0.83); C36(1.10)  LDD1651  [20]
 LDCM0449  CL58 HEK-293T C15(1.27); C36(1.21)  LDD1652  [20]
 LDCM0450  CL59 HEK-293T C36(1.14)  LDD1653  [20]
 LDCM0451  CL6 HEK-293T C41(0.93); C36(1.14)  LDD1654  [20]
 LDCM0452  CL60 HEK-293T C15(1.26); C41(0.82); C36(1.08)  LDD1655  [20]
 LDCM0453  CL61 HEK-293T C41(1.07); C36(0.93)  LDD1656  [20]
 LDCM0454  CL62 HEK-293T C15(1.08); C41(0.91); C36(0.98)  LDD1657  [20]
 LDCM0455  CL63 HEK-293T C15(1.16); C36(1.07)  LDD1658  [20]
 LDCM0456  CL64 HEK-293T C41(0.94); C36(1.07)  LDD1659  [20]
 LDCM0457  CL65 HEK-293T C36(1.06)  LDD1660  [20]
 LDCM0458  CL66 HEK-293T C41(0.95); C36(1.20)  LDD1661  [20]
 LDCM0459  CL67 HEK-293T C41(0.87); C36(1.02)  LDD1662  [20]
 LDCM0460  CL68 HEK-293T C41(0.96); C36(1.03)  LDD1663  [20]
 LDCM0461  CL69 HEK-293T C41(0.88); C36(0.81)  LDD1664  [20]
 LDCM0462  CL7 HEK-293T C41(0.95); C36(1.07)  LDD1665  [20]
 LDCM0463  CL70 HEK-293T C15(1.18); C36(1.15)  LDD1666  [20]
 LDCM0464  CL71 HEK-293T C36(1.07)  LDD1667  [20]
 LDCM0465  CL72 HEK-293T C15(1.13); C41(0.92); C36(1.10)  LDD1668  [20]
 LDCM0466  CL73 HEK-293T C41(0.92); C36(0.93)  LDD1669  [20]
 LDCM0467  CL74 HEK-293T C15(1.15); C41(1.06); C36(1.16)  LDD1670  [20]
 LDCM0469  CL76 HEK-293T C41(0.96); C36(0.98)  LDD1672  [20]
 LDCM0470  CL77 HEK-293T C36(1.01)  LDD1673  [20]
 LDCM0471  CL78 HEK-293T C41(0.98); C36(1.08)  LDD1674  [20]
 LDCM0472  CL79 HEK-293T C41(0.98); C36(1.01)  LDD1675  [20]
 LDCM0473  CL8 HEK-293T C41(0.81); C36(1.15)  LDD1676  [20]
 LDCM0474  CL80 HEK-293T C41(0.82); C36(1.03)  LDD1677  [20]
 LDCM0475  CL81 HEK-293T C41(0.93); C36(0.99)  LDD1678  [20]
 LDCM0476  CL82 HEK-293T C15(1.19); C36(1.13)  LDD1679  [20]
 LDCM0477  CL83 HEK-293T C36(1.30)  LDD1680  [20]
 LDCM0478  CL84 HEK-293T C15(0.97); C41(0.77); C36(1.33)  LDD1681  [20]
 LDCM0479  CL85 HEK-293T C41(1.15); C36(1.03)  LDD1682  [20]
 LDCM0480  CL86 HEK-293T C15(0.96); C41(1.04); C36(1.08)  LDD1683  [20]
 LDCM0481  CL87 HEK-293T C15(0.93); C36(1.06)  LDD1684  [20]
 LDCM0482  CL88 HEK-293T C41(0.92); C36(0.99)  LDD1685  [20]
 LDCM0483  CL89 HEK-293T C36(1.11)  LDD1686  [20]
 LDCM0484  CL9 HEK-293T C41(0.89); C36(1.13)  LDD1687  [20]
 LDCM0485  CL90 HEK-293T C41(0.93); C36(0.97)  LDD1688  [20]
 LDCM0486  CL91 HEK-293T C41(1.03); C36(1.19)  LDD1689  [20]
 LDCM0487  CL92 HEK-293T C41(0.94); C36(0.99)  LDD1690  [20]
 LDCM0488  CL93 HEK-293T C41(0.88); C36(1.12)  LDD1691  [20]
 LDCM0489  CL94 HEK-293T C15(1.22); C36(1.08)  LDD1692  [20]
 LDCM0490  CL95 HEK-293T C36(1.35)  LDD1693  [20]
 LDCM0491  CL96 HEK-293T C15(1.41); C41(0.85); C36(1.28)  LDD1694  [20]
 LDCM0492  CL97 HEK-293T C41(0.89); C36(0.96)  LDD1695  [20]
 LDCM0493  CL98 HEK-293T C15(1.06); C41(0.94); C36(1.12)  LDD1696  [20]
 LDCM0494  CL99 HEK-293T C15(1.00); C36(1.06)  LDD1697  [20]
 LDCM0495  E2913 HEK-293T C15(1.24); C36(0.97)  LDD1698  [20]
 LDCM0625  F8 Ramos C15(1.27)  LDD2187  [21]
 LDCM0572  Fragment10 Ramos C15(0.62)  LDD2189  [21]
 LDCM0573  Fragment11 Ramos C15(3.25)  LDD2190  [21]
 LDCM0574  Fragment12 Ramos C15(0.68)  LDD2191  [21]
 LDCM0575  Fragment13 Ramos C15(1.19)  LDD2192  [21]
 LDCM0576  Fragment14 Ramos C15(0.67)  LDD2193  [21]
 LDCM0579  Fragment20 Ramos C15(0.52)  LDD2194  [21]
 LDCM0580  Fragment21 Ramos C15(0.88)  LDD2195  [21]
 LDCM0582  Fragment23 Ramos C15(0.17)  LDD2196  [21]
 LDCM0578  Fragment27 Ramos C15(0.97)  LDD2197  [21]
 LDCM0586  Fragment28 Ramos C15(0.59)  LDD2198  [21]
 LDCM0588  Fragment30 Ramos C15(1.35)  LDD2199  [21]
 LDCM0589  Fragment31 Ramos C15(1.34)  LDD2200  [21]
 LDCM0590  Fragment32 Ramos C15(0.63)  LDD2201  [21]
 LDCM0468  Fragment33 HEK-293T C15(1.10); C36(1.08)  LDD1671  [20]
 LDCM0596  Fragment38 Ramos C15(1.07)  LDD2203  [21]
 LDCM0566  Fragment4 Ramos C15(0.85)  LDD2184  [21]
 LDCM0427  Fragment51 HEK-293T C15(1.06); C41(1.02); C36(1.13)  LDD1631  [20]
 LDCM0610  Fragment52 Ramos C15(1.58)  LDD2204  [21]
 LDCM0614  Fragment56 Ramos C15(2.07)  LDD2205  [21]
 LDCM0569  Fragment7 Ramos C15(0.84)  LDD2186  [21]
 LDCM0571  Fragment9 Ramos C15(0.48)  LDD2188  [21]
 LDCM0116  HHS-0101 DM93 Y69(0.77); Y46(0.83)  LDD0264  [8]
 LDCM0117  HHS-0201 DM93 Y46(0.75); Y69(0.87)  LDD0265  [8]
 LDCM0118  HHS-0301 DM93 Y46(0.18); Y69(0.27)  LDD0266  [8]
 LDCM0119  HHS-0401 DM93 Y46(1.04); Y69(1.09)  LDD0267  [8]
 LDCM0120  HHS-0701 DM93 Y46(0.54); Y69(0.93)  LDD0268  [8]
 LDCM0107  IAA HeLa H33(0.00); C41(0.00); H57(0.00)  LDD0221  [16]
 LDCM0022  KB02 HEK-293T C36(0.91); C36(0.85); C41(0.85)  LDD1492  [20]
 LDCM0023  KB03 HEK-293T C36(1.06); C36(0.93); C41(0.93)  LDD1497  [20]
 LDCM0024  KB05 HMCB C19(1.30)  LDD3312  [6]
 LDCM0109  NEM HeLa N.A.  LDD0223  [16]
 LDCM0497  Nucleophilic fragment 11b MDA-MB-231 C36(1.13); C41(1.08)  LDD2090  [7]
 LDCM0500  Nucleophilic fragment 13a MDA-MB-231 C36(1.02); C41(0.75)  LDD2093  [7]
 LDCM0501  Nucleophilic fragment 13b MDA-MB-231 C36(1.68); C41(0.93)  LDD2094  [7]
 LDCM0503  Nucleophilic fragment 14b MDA-MB-231 C36(0.29)  LDD2096  [7]
 LDCM0505  Nucleophilic fragment 15b MDA-MB-231 C41(0.92)  LDD2098  [7]
 LDCM0506  Nucleophilic fragment 16a MDA-MB-231 C36(1.08); C41(0.65)  LDD2099  [7]
 LDCM0507  Nucleophilic fragment 16b MDA-MB-231 C36(0.37); C41(0.45)  LDD2100  [7]
 LDCM0511  Nucleophilic fragment 18b MDA-MB-231 C36(0.55)  LDD2104  [7]
 LDCM0512  Nucleophilic fragment 19a MDA-MB-231 C41(1.17)  LDD2105  [7]
 LDCM0514  Nucleophilic fragment 20a MDA-MB-231 C36(0.90)  LDD2107  [7]
 LDCM0515  Nucleophilic fragment 20b MDA-MB-231 C36(0.90)  LDD2108  [7]
 LDCM0516  Nucleophilic fragment 21a MDA-MB-231 C36(0.83); C41(0.59)  LDD2109  [7]
 LDCM0517  Nucleophilic fragment 21b MDA-MB-231 C36(1.15); C41(0.83)  LDD2110  [7]
 LDCM0518  Nucleophilic fragment 22a MDA-MB-231 C36(1.11); C41(0.72)  LDD2111  [7]
 LDCM0522  Nucleophilic fragment 24a MDA-MB-231 C36(0.67)  LDD2115  [7]
 LDCM0523  Nucleophilic fragment 24b MDA-MB-231 C36(0.51)  LDD2116  [7]
 LDCM0525  Nucleophilic fragment 25b MDA-MB-231 C36(0.59)  LDD2118  [7]
 LDCM0526  Nucleophilic fragment 26a MDA-MB-231 C36(1.60); C41(0.99)  LDD2119  [7]
 LDCM0529  Nucleophilic fragment 27b MDA-MB-231 C36(0.43)  LDD2122  [7]
 LDCM0530  Nucleophilic fragment 28a MDA-MB-231 C36(0.88); C41(0.40)  LDD2123  [7]
 LDCM0531  Nucleophilic fragment 28b MDA-MB-231 C36(0.48)  LDD2124  [7]
 LDCM0532  Nucleophilic fragment 29a MDA-MB-231 C36(0.78); C41(0.49)  LDD2125  [7]
 LDCM0533  Nucleophilic fragment 29b MDA-MB-231 C36(0.47)  LDD2126  [7]
 LDCM0534  Nucleophilic fragment 30a MDA-MB-231 C36(0.84); C41(0.66)  LDD2127  [7]
 LDCM0536  Nucleophilic fragment 31 MDA-MB-231 C36(0.94)  LDD2129  [7]
 LDCM0541  Nucleophilic fragment 36 MDA-MB-231 C41(0.46)  LDD2134  [7]
 LDCM0542  Nucleophilic fragment 37 MDA-MB-231 C36(1.12); C41(0.87)  LDD2135  [7]
 LDCM0544  Nucleophilic fragment 39 MDA-MB-231 C36(1.09); C41(0.82)  LDD2137  [7]
 LDCM0211  Nucleophilic fragment 3b MDA-MB-231 C36(1.53)  LDD1700  [7]
 LDCM0546  Nucleophilic fragment 40 MDA-MB-231 C36(0.84); C41(0.71)  LDD2140  [7]
 LDCM0547  Nucleophilic fragment 41 MDA-MB-231 C36(0.35)  LDD2141  [7]
 LDCM0549  Nucleophilic fragment 43 MDA-MB-231 C36(0.81); C41(0.81)  LDD2143  [7]
 LDCM0551  Nucleophilic fragment 5b MDA-MB-231 C41(1.86)  LDD2145  [7]
 LDCM0552  Nucleophilic fragment 6a MDA-MB-231 C36(1.11)  LDD2146  [7]
 LDCM0553  Nucleophilic fragment 6b MDA-MB-231 C36(1.68)  LDD2147  [7]
 LDCM0555  Nucleophilic fragment 7b MDA-MB-231 C36(0.44)  LDD2149  [7]
 LDCM0556  Nucleophilic fragment 8a MDA-MB-231 C41(0.75)  LDD2150  [7]
 LDCM0557  Nucleophilic fragment 8b MDA-MB-231 C36(0.40)  LDD2151  [7]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 12 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Actin, cytoplasmic 1 (ACTB) Actin family P60709
60 kDa heat shock protein, mitochondrial (HSPD1) Chaperonin (HSP60) family P10809
Bleomycin hydrolase (BLMH) Peptidase C1 family Q13867
Parkinson disease protein 7 (PARK7) Peptidase C56 family Q99497
cAMP-dependent protein kinase catalytic subunit alpha (PRKACA) AGC Ser/Thr protein kinase family P17612
Protein kinase C delta type (PRKCD) AGC Ser/Thr protein kinase family Q05655
Calcium/calmodulin-dependent protein kinase type II subunit alpha (CAMK2A) CAMK Ser/Thr protein kinase family Q9UQM7
Serine/threonine-protein kinase PINK1, mitochondrial (PINK1) Ser/Thr protein kinase family Q9BXM7
Mitogen-activated protein kinase kinase kinase 5 (MAP3K5) STE Ser/Thr protein kinase family Q99683
Tyrosine-protein kinase Fyn (FYN) Tyr protein kinase family P06241
Ras-related C3 botulinum toxin substrate 1 (RAC1) Rho family P63000
E3 ubiquitin-protein ligase CHIP (STUB1) . Q9UNE7
Transporter and channel
Click To Hide/Show 5 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Alpha-synuclein (SNCA) Synuclein family P37840
Sortilin (SORT1) VPS10-related sortilin family Q99523
Vacuolar protein sorting-associated protein 26A (VPS26A) VPS26 family O75436
Vacuolar protein sorting-associated protein 35 (VPS35) VPS35 family Q96QK1
TBC1 domain family member 5 (TBC1D5) . Q92609
Transcription factor
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Homeobox protein TGIF1 (TGIF1) TALE/TGIF homeobox family Q15583
Other
Click To Hide/Show 6 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Amyloid beta precursor like protein 1 (APLP1) APP family P51693
Alpha-2-macroglobulin (A2M) Protease inhibitor I39 (alpha-2-macroglobulin) family P01023
Alpha-1-antichymotrypsin (SERPINA3) Serpin family P01011
Biglycan (BGN) Small leucine-rich proteoglycan (SLRP) family P21810
Transmembrane and coiled-coil domain-containing protein 4 (TMCO4) TMCO4 family Q5TGY1
Sequestosome-1 (SQSTM1) . Q13501

References

1 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
2 Low-Toxicity Sulfonium-Based Probes for Cysteine-Specific Profiling in Live Cells. Anal Chem. 2022 Mar 15;94(10):4366-4372. doi: 10.1021/acs.analchem.1c05129. Epub 2022 Mar 4.
3 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
4 Oxidant-Induced Bioconjugation for Protein Labeling in Live Cells. ACS Chem Biol. 2023 Jan 20;18(1):112-122. doi: 10.1021/acschembio.2c00740. Epub 2022 Dec 21.
5 An Azo Coupling-Based Chemoproteomic Approach to Systematically Profile the Tyrosine Reactivity in the Human Proteome. Anal Chem. 2021 Jul 27;93(29):10334-10342. doi: 10.1021/acs.analchem.1c01935. Epub 2021 Jul 12.
6 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
7 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
8 Discovery of a Cell-Active SuTEx Ligand of Prostaglandin Reductase 2. Chembiochem. 2021 Jun 15;22(12):2134-2139. doi: 10.1002/cbic.202000879. Epub 2021 Apr 29.
9 Global targeting of functional tyrosines using sulfur-triazole exchange chemistry. Nat Chem Biol. 2020 Feb;16(2):150-159. doi: 10.1038/s41589-019-0404-5. Epub 2019 Nov 25.
10 Global profiling of functional histidines in live cells using small-molecule photosensitizer and chemical probe relay labelling. Nat Chem. 2024 Jun 4. doi: 10.1038/s41557-024-01545-6. Online ahead of print.
Mass spectrometry data entry: PXD042377
11 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
12 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
13 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
14 Oxidative cyclization reagents reveal tryptophan cation- interactions. Nature. 2024 Mar;627(8004):680-687. doi: 10.1038/s41586-024-07140-6. Epub 2024 Mar 6.
Mass spectrometry data entry: PXD001377 , PXD005252
15 Tunable Amine-Reactive Electrophiles for Selective Profiling of Lysine. Angew Chem Int Ed Engl. 2022 Jan 26;61(5):e202112107. doi: 10.1002/anie.202112107. Epub 2021 Dec 16.
16 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
17 Chemoproteomic profiling of targets of lipid-derived electrophiles by bioorthogonal aminooxy probe. Redox Biol. 2017 Aug;12:712-718. doi: 10.1016/j.redox.2017.04.001. Epub 2017 Apr 5.
18 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
19 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
20 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
21 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578