General Information of Experiment

Probe Name IPM  Probe Info 
Probe concentration 10 uM
Criteria Quantification: Probe vs (Probe+Competitor)
Quantitative Method
LFQ
Competitor Name GA  Competitor Info 
Competitor Concentration 3 uM
In Vivo Experiment Model Model Type Cell lysate
Derived Tissue Breast
Disease Model Invasive breast carcinoma [ICD-11:2C60]
Model Name Human invasive breast carcinoma cell lysate (MCF-7)

Interaction Altas of This Experiment [1]

Enzyme
Click to Show/Hide to Show 19 Protein Related to This Bioclass
Target ID Target Name Binding Sites Binding Ratio
 LDTP15154  Dehydrogenase/reductase SDR family member 13 (DHRS13) C174 11.2
 LDTP00464  Glutathione S-transferase 3, mitochondrial (MGST3) C56 5.3
 LDTP01268  2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial (GCAT) C106 3.7
 LDTP11248  Probable ATP-dependent RNA helicase DDX23 (DDX23) C692 3.4
 LDTP04358  Carnitine O-palmitoyltransferase 1, liver isoform (CPT1A) C96 3.2
 LDTP09053  Xyloside xylosyltransferase 1 (XXYLT1) C10 3.0
 LDTP01783  Aspartate aminotransferase, mitochondrial (GOT2) C106 2.8
 LDTP11243  Glucose-6-phosphatase 3 (G6PC3) C269 2.8
 LDTP09841  Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase (ALG3) C21 2.8
 LDTP10077  Patatin-like phospholipase domain-containing protein 2 (PNPLA2) C412 2.4
 LDTP06101  Fas-activated serine/threonine kinase (FASTK) C212 2.4
 LDTP00293  Cytochrome c oxidase subunit NDUFA4 (NDUFA4) C44 2.3
 LDTP02733  Pyruvate kinase PKM (PKM) C49 2.3
 LDTP01503  Mitofusin-2 (MFN2) C8 2.2
 LDTP03332  Proteasome subunit alpha type-3 (PSMA3) C42 2.2
 LDTP10049  FAST kinase domain-containing protein 4 (TBRG4) C335 2.2
 LDTP09216  Serine palmitoyltransferase small subunit B (SPTSSB) C68 2.1
 LDTP06787  Inactive hydroxysteroid dehydrogenase-like protein 1 (HSDL1) C265 2.1
 LDTP05481  Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (GFPT1) C55 2.1
Transporter and channel
Click to Show/Hide to Show 5 Protein Related to This Bioclass
Target ID Target Name Binding Sites Binding Ratio
 LDTP11213  Nucleoporin NDC1 (NDC1) C9 3.3
 LDTP05511  Cytoskeleton-associated protein 4 (CKAP4) C100 3.1
 LDTP12909  Mitochondrial carrier homolog 1 (MTCH1) C385 2.6
 LDTP11213  Nucleoporin NDC1 (NDC1) C468 2.0
 LDTP02262  Heat shock protein HSP 90-beta (HSP90AB1) C412 2.0
Other
Click to Show/Hide to Show 15 Protein Related to This Bioclass
Target ID Target Name Binding Sites Binding Ratio
 LDTP05257  Receptor expression-enhancing protein 5 (REEP5) C18 4.8
 LDTP13269  Cysteine and histidine-rich domain-containing protein 1 (CHORDC1) C86 4.7
 LDTP15887  Lipase maturation factor 2 (LMF2) C659 4.3
 LDTP11304  Mitochondrial import inner membrane translocase subunit Tim21 (TIMM21) C192 3.7
 LDTP06277  Mortality factor 4-like protein 2 (MORF4L2) C165 3.4
 LDTP04935  Prefoldin subunit 3 (VBP1) C113 2.7
 LDTP05533  Kinesin light chain 1 (KLC1) C55 2.6
 LDTP19324  Vesicle transport protein SFT2C (SFT2D3) C67 2.4
 LDTP17132  Ubiquinol-cytochrome c reductase complex assembly factor 4 (UQCC4) C6 2.2
 LDTP06543  DNA damage-binding protein 1 (DDB1) C128 2.2
 LDTP05186  Large ribosomal subunit protein eL24 (RPL24) C36 2.2
 LDTP00911  Double-strand-break repair protein rad21 homolog (RAD21) C585 2.2
 LDTP04027  Matrin-3 (MATR3) C563 2.2
 LDTP06983  Serine/threonine-protein phosphatase 6 regulatory subunit 3 (PPP6R3) C844 2.1
 LDTP02164  Nucleophosmin (NPM1) C275 2.1

References

1 Combined Omics Approach Identifies Gambogic Acid and Related Xanthones as Covalent Inhibitors of the Serine Palmitoyltransferase Complex. Cell Chem Biol. 2020 May 21;27(5):586-597.e12. doi: 10.1016/j.chembiol.2020.03.008. Epub 2020 Apr 23.