Details of the Probe

General Information of Probe

Probe ID
LDPC0002
Probe Name
aONE
Synonyms
4-Oxo-2-Nonenal Alkyne; (E)-4-Oxonon-2-en-8-ynal; 1680193-58-1; 4-Oxo-2-NonenalAlkyne; Alkynyl 4-oxo-2-nonenal; (2E)-4-OXONON-2-EN-8-YNAL; BP-22692; HY-116879; CS-0066735
Probe Type
ABPP Probe
Structure
3D MOL 2D MOL
Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 150.17
Lipid-water partition coefficient (xlogp) 0.5
Rotatable Bond Count (rotbonds) 5
Hydrogen Bond Donor Count (hbonddonor) 0
Hydrogen Bond Acceptor Count (hbondacc) 2
Chemical Identifiers
Formula
C9H10O2
IUPAC Name
(E)-4-oxonon-2-en-8-ynal
Canonical SMILES
C#CCCCC(=O)C=CC=O
InChI
InChI=1S/C9H10O2/c1-2-3-4-6-9(11)7-5-8-10/h1,5,7-8H,3-4,6H2/b7-5+
InChIKey
YSPMTKWXGONLQR-FNORWQNLSA-N

The Probe Interaction Atlas

Target(s) List of this Probe

10 Enzyme Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Alpha-enolase (ENO1) LDTP02159 K80; K5  LDD0002 
Alpha-enolase (ENO1) LDTP02159 K80; K5  LDD0002 
Casein kinase II subunit alpha (CSNK2A1) LDTP05077 K102  LDD0002 
Casein kinase II subunit alpha (CSNK2A1) LDTP05077 K102  LDD0002 
E3 ubiquitin-protein ligase LRSAM1 (LRSAM1) LDTP07672 K138  LDD0002 
E3 ubiquitin-protein ligase LRSAM1 (LRSAM1) LDTP07672 K138  LDD0002 
Elongation factor 2 (EEF2) LDTP02672 K318  LDD0002 
Elongation factor 2 (EEF2) LDTP02672 K318  LDD0002 
Probable ATP-dependent RNA helicase DDX41 (DDX41) LDTP13401 K366  LDD0002 
Probable ATP-dependent RNA helicase DDX41 (DDX41) LDTP13401 K366  LDD0002 
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⏷ Show the Full List of 10 Enzyme
6 Transporter and channel Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
14-3-3 protein theta (YWHAQ) LDTP03385 K9  LDD0002 
14-3-3 protein theta (YWHAQ) LDTP03385 K9  LDD0002 
Bridge-like lipid transfer protein family member 3A (BLTP3A) LDTP07361 K255  LDD0002 
Bridge-like lipid transfer protein family member 3A (BLTP3A) LDTP07361 K255  LDD0002 
Disintegrin and metalloproteinase domain-containing protein 11 (ADAM11) LDTP01116 K278  LDD0002 
Disintegrin and metalloproteinase domain-containing protein 11 (ADAM11) LDTP01116 K278  LDD0002 
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⏷ Show the Full List of 6 Transporter and channel
32 Other Labeled by This Probe
Target Name Target ID Binding Site(Ratio) Interaction ID
Fibrosin-1-like protein (FBRSL1) LDTP18445 K118  LDD0002 
Fibrosin-1-like protein (FBRSL1) LDTP18445 K118  LDD0002 
Heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) LDTP02364 K106  LDD0002 
Heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) LDTP02364 K106  LDD0002 
Heterogeneous nuclear ribonucleoprotein A3 (HNRNPA3) LDTP04495 K127  LDD0002 
Heterogeneous nuclear ribonucleoprotein A3 (HNRNPA3) LDTP04495 K127  LDD0002 
Histone H1.2 (H1-2) LDTP02845 K46  LDD0002 
Histone H1.2 (H1-2) LDTP02845 K46  LDD0002 
Histone H1.3 (H1-3) LDTP02844 K47  LDD0002 
Histone H1.3 (H1-3) LDTP02844 K47  LDD0002 
Histone H1.4 (H1-4) LDTP02494 K46  LDD0002 
Histone H1.4 (H1-4) LDTP02494 K46  LDD0002 
Histone H2A type 2-C (H2AC20) LDTP06627 K120  LDD0002 
Histone H2A type 2-C (H2AC20) LDTP06627 K120  LDD0002 
Histone H2B type 1-K (H2BC12) LDTP01054 K109; K117  LDD0002 
Histone H2B type 1-K (H2BC12) LDTP01054 K109; K117  LDD0002 
Histone H2B type 3-B (H2BC26) LDTP08787 K117; K109  LDD0002 
Histone H2B type 3-B (H2BC26) LDTP08787 K117; K109  LDD0002 
Histone H4 (H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9; H4C11; H4C12; H4C13; H4C14; H4C15; H4C16) LDTP05004 K78; K92  LDD0002 
Histone H4 (H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9; H4C11; H4C12; H4C13; H4C14; H4C15; H4C16) LDTP05004 K78; K92  LDD0002 
NACHT, LRR and PYD domains-containing protein 11 (NLRP11) LDTP14736 K172  LDD0002 
NACHT, LRR and PYD domains-containing protein 11 (NLRP11) LDTP14736 K172  LDD0002 
Nucleolin (NCL) LDTP02990 K398  LDD0002 
Nucleolin (NCL) LDTP02990 K398  LDD0002 
Profilin-1 (PFN1) LDTP02218 K108  LDD0002 
Profilin-1 (PFN1) LDTP02218 K108  LDD0002 
Protocadherin-11 Y-linked (PCDH11Y) LDTP11520 K96  LDD0002 
Protocadherin-11 Y-linked (PCDH11Y) LDTP11520 K96  LDD0002 
Rho GTPase-activating protein 29 (ARHGAP29) LDTP06880 K1059  LDD0002 
Rho GTPase-activating protein 29 (ARHGAP29) LDTP06880 K1059  LDD0002 
Sperm-associated antigen 1 (SPAG1) LDTP05522 K190  LDD0002 
Sperm-associated antigen 1 (SPAG1) LDTP05522 K190  LDD0002 
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⏷ Show the Full List of 32 Other

Full Information of The Labelling Profiles of This Probe

Qualitation: Labeling site identification
  
Experiment 1 Reporting the Labelling Profiles of This Probe
REF [1]
Probe concentration
50 uM
Quantitative Method
Isotope tag
In Vitro Experiment Model
Model Type
Living cell
Derived Tissue
Colon
Disease Model
Colon carcinoma [ICD-11:2B90]
Model Name
Human colon carcinoma cells (RKO)
Interaction Atlas ID
 LDD0002 
Download The Altas

References

1 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764