General Information of Target

Target ID LDTP01390
Target Name E3 ubiquitin-protein ligase RNF8 (RNF8)
Gene Name RNF8
Gene ID 9025
Synonyms
KIAA0646; E3 ubiquitin-protein ligase RNF8; hRNF8; EC 2.3.2.27; RING finger protein 8; RING-type E3 ubiquitin transferase RNF8
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS
RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY
EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS
CESGQPVKSQGKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSS
ASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLC
AEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKD
FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH
SFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK
AKRLF
Target Bioclass
Enzyme
Family
RNF8 family
Subcellular location
Nucleus
Function
E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). Also controls the recruitment of UIMC1-BRCC3 (RAP80-BRCC36) and PAXIP1/PTIP to DNA damage sites. Also recruited at DNA interstrand cross-links (ICLs) sites and catalyzes 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20/C1orf86 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Promotes the formation of 'Lys-63'-linked polyubiquitin chains via interactions with the specific ubiquitin-conjugating UBE2N/UBC13 and ubiquitinates non-histone substrates such as PCNA. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains via interaction with the ubiquitin-conjugating UBE2L6/UBCH8, leading to degradation of substrate proteins such as CHEK2, JMJD2A/KDM4A and KU80/XRCC5: it is still unclear how the preference toward 'Lys-48'- versus 'Lys-63'-linked ubiquitination is regulated but it could be due to RNF8 ability to interact with specific E2 specific ligases. For instance, interaction with phosphorylated HERC2 promotes the association between RNF8 and UBE2N/UBC13 and favors the specific formation of 'Lys-63'-linked ubiquitin chains. Promotes non-homologous end joining (NHEJ) by promoting the 'Lys-48'-linked ubiquitination and degradation the of KU80/XRCC5. Following DNA damage, mediates the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF168, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Following DNA damage, mediates the ubiquitination and degradation of POLD4/p12, a subunit of DNA polymerase delta. In the absence of POLD4, DNA polymerase delta complex exhibits higher proofreading activity. In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation. Involved in the activation of ATM by promoting histone H2B ubiquitination, which indirectly triggers histone H4 'Lys-16' acetylation (H4K16ac), establishing a chromatin environment that promotes efficient activation of ATM kinase. Required in the testis, where it plays a role in the replacement of histones during spermatogenesis. At uncapped telomeres, promotes the joining of deprotected chromosome ends by inducing H2A ubiquitination and TP53BP1 recruitment, suggesting that it may enhance cancer development by aggravating telomere-induced genome instability in case of telomeric crisis. Promotes the assembly of RAD51 at DNA DSBs in the absence of BRCA1 and TP53BP1 Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. May be required for proper exit from mitosis after spindle checkpoint activation and may regulate cytokinesis. May play a role in the regulation of RXRA-mediated transcriptional activity. Not involved in RXRA ubiquitination by UBE2E2.
Uniprot ID
O76064
Ensemble ID
ENST00000229866.10
HGNC ID
HGNC:10071

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
COLO800 Substitution: p.M25G .
HL60 Substitution: p.M25G .
MEWO SNV: p.M263I DBIA    Probe Info 
SF295 SNV: p.R16L .
SNU308 SNV: p.M143I .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 5 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
IPM
 Probe Info 
N.A.  LDD0241  [1]
AHL-Pu-1
 Probe Info 
C55(2.27); C300(5.36)  LDD0169  [2]
IA-alkyne
 Probe Info 
C181(10.03)  LDD0372  [2]
DBIA
 Probe Info 
C181(1.53)  LDD0080  [3]
N1
 Probe Info 
E233(0.00); H231(0.00); H232(0.00); Q234(0.00)  LDD0245  [4]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0026  4SU-RNA+native RNA HEK-293T C55(2.27); C300(5.36)  LDD0169  [2]
 LDCM0214  AC1 HCT 116 C181(0.98)  LDD0531  [3]
 LDCM0215  AC10 HCT 116 C181(0.90)  LDD0532  [3]
 LDCM0216  AC100 HCT 116 C437(0.62); C440(0.62)  LDD0533  [3]
 LDCM0217  AC101 HCT 116 C437(0.72); C440(0.72)  LDD0534  [3]
 LDCM0218  AC102 HCT 116 C437(0.53); C440(0.53)  LDD0535  [3]
 LDCM0219  AC103 HCT 116 C437(0.50); C440(0.50)  LDD0536  [3]
 LDCM0220  AC104 HCT 116 C437(0.52); C440(0.52)  LDD0537  [3]
 LDCM0221  AC105 HCT 116 C437(0.46); C440(0.46)  LDD0538  [3]
 LDCM0222  AC106 HCT 116 C437(0.50); C440(0.50)  LDD0539  [3]
 LDCM0223  AC107 HCT 116 C437(0.49); C440(0.49)  LDD0540  [3]
 LDCM0224  AC108 HCT 116 C437(0.47); C440(0.47)  LDD0541  [3]
 LDCM0225  AC109 HCT 116 C437(0.53); C440(0.53)  LDD0542  [3]
 LDCM0226  AC11 HCT 116 C181(1.08)  LDD0543  [3]
 LDCM0227  AC110 HCT 116 C437(0.44); C440(0.44)  LDD0544  [3]
 LDCM0228  AC111 HCT 116 C437(0.49); C440(0.49)  LDD0545  [3]
 LDCM0229  AC112 HCT 116 C437(0.45); C440(0.45)  LDD0546  [3]
 LDCM0230  AC113 HCT 116 C437(0.58); C440(0.58)  LDD0547  [3]
 LDCM0231  AC114 HEK-293T C440(0.88); C181(1.01)  LDD0829  [3]
 LDCM0232  AC115 HEK-293T C440(1.01); C181(0.81)  LDD0830  [3]
 LDCM0233  AC116 HEK-293T C440(0.92); C181(0.94)  LDD0831  [3]
 LDCM0234  AC117 HEK-293T C440(1.08); C181(0.70)  LDD0832  [3]
 LDCM0235  AC118 HEK-293T C440(1.11); C181(0.60)  LDD0833  [3]
 LDCM0236  AC119 HEK-293T C440(1.18); C181(0.60)  LDD0834  [3]
 LDCM0237  AC12 HCT 116 C181(1.00)  LDD0554  [3]
 LDCM0238  AC120 HEK-293T C440(1.02); C181(0.65)  LDD0836  [3]
 LDCM0239  AC121 HEK-293T C440(1.67); C181(0.64)  LDD0837  [3]
 LDCM0240  AC122 HEK-293T C440(1.72); C181(0.58)  LDD0838  [3]
 LDCM0241  AC123 HEK-293T C440(1.20); C181(0.57)  LDD0839  [3]
 LDCM0242  AC124 HEK-293T C440(1.20); C181(0.64)  LDD0840  [3]
 LDCM0243  AC125 HEK-293T C440(1.98); C181(0.56)  LDD0841  [3]
 LDCM0244  AC126 HEK-293T C440(1.50); C181(0.58)  LDD0842  [3]
 LDCM0245  AC127 HEK-293T C440(1.76); C181(0.56)  LDD0843  [3]
 LDCM0246  AC128 HEK-293T C440(0.69); C181(1.24)  LDD0844  [3]
 LDCM0247  AC129 HEK-293T C440(0.81); C181(0.82)  LDD0845  [3]
 LDCM0249  AC130 HEK-293T C440(0.82); C181(0.77)  LDD0847  [3]
 LDCM0250  AC131 HEK-293T C440(0.77); C181(1.05)  LDD0848  [3]
 LDCM0251  AC132 HEK-293T C440(0.78); C181(0.95)  LDD0849  [3]
 LDCM0252  AC133 HEK-293T C440(1.05); C181(0.66)  LDD0850  [3]
 LDCM0253  AC134 HEK-293T C440(0.87); C181(0.66)  LDD0851  [3]
 LDCM0254  AC135 HEK-293T C440(0.88); C181(0.64)  LDD0852  [3]
 LDCM0255  AC136 HEK-293T C440(0.99); C181(0.60)  LDD0853  [3]
 LDCM0256  AC137 HEK-293T C440(0.99); C181(0.67)  LDD0854  [3]
 LDCM0257  AC138 HEK-293T C440(1.04); C181(0.67)  LDD0855  [3]
 LDCM0258  AC139 HEK-293T C440(0.97); C181(0.69)  LDD0856  [3]
 LDCM0259  AC14 HCT 116 C181(0.84)  LDD0576  [3]
 LDCM0260  AC140 HEK-293T C440(0.91); C181(0.62)  LDD0858  [3]
 LDCM0261  AC141 HEK-293T C440(1.10); C181(0.65)  LDD0859  [3]
 LDCM0262  AC142 HEK-293T C440(1.03); C181(0.66)  LDD0860  [3]
 LDCM0263  AC143 HEK-293T C440(1.08); C181(0.91)  LDD0861  [3]
 LDCM0264  AC144 HEK-293T C440(1.11); C181(0.74)  LDD0862  [3]
 LDCM0265  AC145 HEK-293T C440(1.19); C181(0.74)  LDD0863  [3]
 LDCM0266  AC146 HEK-293T C440(1.23); C181(0.80)  LDD0864  [3]
 LDCM0267  AC147 HEK-293T C440(1.27); C181(0.83)  LDD0865  [3]
 LDCM0268  AC148 HEK-293T C440(1.11); C181(0.68)  LDD0866  [3]
 LDCM0269  AC149 HEK-293T C440(0.99); C181(1.14)  LDD0867  [3]
 LDCM0270  AC15 HCT 116 C181(0.93)  LDD0587  [3]
 LDCM0271  AC150 HEK-293T C440(1.02); C181(0.80)  LDD0869  [3]
 LDCM0272  AC151 HEK-293T C440(1.36); C181(0.77)  LDD0870  [3]
 LDCM0273  AC152 HEK-293T C440(1.09); C181(0.73)  LDD0871  [3]
 LDCM0274  AC153 HEK-293T C440(1.18); C181(0.95)  LDD0872  [3]
 LDCM0621  AC154 HEK-293T C440(1.16); C181(0.72)  LDD2162  [3]
 LDCM0622  AC155 HEK-293T C440(0.96); C181(0.77)  LDD2163  [3]
 LDCM0623  AC156 HEK-293T C440(1.13); C181(0.83)  LDD2164  [3]
 LDCM0624  AC157 HEK-293T C440(1.70); C181(0.73)  LDD2165  [3]
 LDCM0276  AC17 HEK-293T C440(1.54)  LDD0874  [3]
 LDCM0277  AC18 HEK-293T C440(1.46)  LDD0875  [3]
 LDCM0278  AC19 HEK-293T C440(1.24)  LDD0876  [3]
 LDCM0279  AC2 HCT 116 C181(1.10)  LDD0596  [3]
 LDCM0280  AC20 HEK-293T C440(1.34)  LDD0878  [3]
 LDCM0281  AC21 HEK-293T C440(1.93)  LDD0879  [3]
 LDCM0282  AC22 HEK-293T C440(1.05)  LDD0880  [3]
 LDCM0283  AC23 HEK-293T C440(1.57)  LDD0881  [3]
 LDCM0284  AC24 HEK-293T C440(1.24)  LDD0882  [3]
 LDCM0285  AC25 HEK-293T C440(1.03); C181(0.75)  LDD0883  [3]
 LDCM0286  AC26 HEK-293T C440(0.98); C181(0.83)  LDD0884  [3]
 LDCM0287  AC27 HEK-293T C440(1.21); C181(0.83)  LDD0885  [3]
 LDCM0288  AC28 HEK-293T C440(5.08); C181(0.76)  LDD0886  [3]
 LDCM0289  AC29 HEK-293T C440(1.27); C181(0.67)  LDD0887  [3]
 LDCM0290  AC3 HCT 116 C181(0.97)  LDD0607  [3]
 LDCM0291  AC30 HEK-293T C440(1.24); C181(0.83)  LDD0889  [3]
 LDCM0292  AC31 HEK-293T C440(1.24); C181(0.86)  LDD0890  [3]
 LDCM0293  AC32 HEK-293T C440(1.06); C181(0.70)  LDD0891  [3]
 LDCM0294  AC33 HEK-293T C440(1.13); C181(0.79)  LDD0892  [3]
 LDCM0295  AC34 HEK-293T C440(1.23); C181(0.64)  LDD0893  [3]
 LDCM0296  AC35 HCT 116 C181(0.97); C437(1.09); C440(1.09)  LDD0613  [3]
 LDCM0297  AC36 HCT 116 C437(0.96); C440(0.96); C181(1.01)  LDD0614  [3]
 LDCM0298  AC37 HCT 116 C181(0.89); C437(1.10); C440(1.10)  LDD0615  [3]
 LDCM0299  AC38 HCT 116 C437(0.84); C440(0.84); C181(1.06)  LDD0616  [3]
 LDCM0300  AC39 HCT 116 C437(0.92); C440(0.92); C181(1.07)  LDD0617  [3]
 LDCM0301  AC4 HCT 116 C181(0.87)  LDD0618  [3]
 LDCM0302  AC40 HCT 116 C437(0.85); C440(0.85); C181(0.92)  LDD0619  [3]
 LDCM0303  AC41 HCT 116 C437(1.08); C440(1.08); C181(1.10)  LDD0620  [3]
 LDCM0304  AC42 HCT 116 C437(0.97); C440(0.97); C181(0.97)  LDD0621  [3]
 LDCM0305  AC43 HCT 116 C437(1.09); C440(1.09); C181(1.29)  LDD0622  [3]
 LDCM0306  AC44 HCT 116 C181(0.93); C437(1.38); C440(1.38)  LDD0623  [3]
 LDCM0307  AC45 HCT 116 C181(0.87); C437(1.24); C440(1.24)  LDD0624  [3]
 LDCM0308  AC46 HEK-293T C440(0.95)  LDD0906  [3]
 LDCM0309  AC47 HEK-293T C440(1.02)  LDD0907  [3]
 LDCM0310  AC48 HEK-293T C440(1.00)  LDD0908  [3]
 LDCM0311  AC49 HEK-293T C440(1.14)  LDD0909  [3]
 LDCM0312  AC5 HCT 116 C181(0.94)  LDD0629  [3]
 LDCM0313  AC50 HEK-293T C440(0.95)  LDD0911  [3]
 LDCM0314  AC51 HEK-293T C440(1.13)  LDD0912  [3]
 LDCM0315  AC52 HEK-293T C440(1.21)  LDD0913  [3]
 LDCM0316  AC53 HEK-293T C440(1.14)  LDD0914  [3]
 LDCM0317  AC54 HEK-293T C440(1.15)  LDD0915  [3]
 LDCM0318  AC55 HEK-293T C440(1.10)  LDD0916  [3]
 LDCM0319  AC56 HEK-293T C440(0.95)  LDD0917  [3]
 LDCM0320  AC57 HCT 116 C437(0.87); C440(0.87)  LDD0637  [3]
 LDCM0321  AC58 HCT 116 C437(0.66); C440(0.66)  LDD0638  [3]
 LDCM0322  AC59 HCT 116 C437(0.76); C440(0.76)  LDD0639  [3]
 LDCM0323  AC6 HCT 116 C181(0.93)  LDD0640  [3]
 LDCM0324  AC60 HCT 116 C437(0.55); C440(0.55)  LDD0641  [3]
 LDCM0325  AC61 HCT 116 C437(0.80); C440(0.80)  LDD0642  [3]
 LDCM0326  AC62 HCT 116 C437(0.64); C440(0.64)  LDD0643  [3]
 LDCM0327  AC63 HCT 116 C437(0.67); C440(0.67)  LDD0644  [3]
 LDCM0328  AC64 HCT 116 C437(0.55); C440(0.55)  LDD0645  [3]
 LDCM0329  AC65 HCT 116 C437(0.70); C440(0.70)  LDD0646  [3]
 LDCM0330  AC66 HCT 116 C437(0.73); C440(0.73)  LDD0647  [3]
 LDCM0331  AC67 HCT 116 C437(0.79); C440(0.79)  LDD0648  [3]
 LDCM0332  AC68 HEK-293T C437(0.92); C440(1.08); C181(1.12)  LDD0930  [3]
 LDCM0333  AC69 HEK-293T C437(1.06); C440(1.02); C181(0.88)  LDD0931  [3]
 LDCM0334  AC7 HCT 116 C181(0.93)  LDD0651  [3]
 LDCM0335  AC70 HEK-293T C437(1.23); C440(1.21); C181(1.12)  LDD0933  [3]
 LDCM0336  AC71 HEK-293T C437(1.16); C440(1.10); C181(0.99)  LDD0934  [3]
 LDCM0337  AC72 HEK-293T C437(0.96); C440(0.99); C181(0.99)  LDD0935  [3]
 LDCM0338  AC73 HEK-293T C437(1.04); C440(1.12); C181(1.13)  LDD0936  [3]
 LDCM0339  AC74 HEK-293T C437(1.60); C440(1.74); C181(0.91)  LDD0937  [3]
 LDCM0340  AC75 HEK-293T C437(1.66); C440(1.28); C181(0.85)  LDD0938  [3]
 LDCM0341  AC76 HEK-293T C437(1.22); C440(1.01); C181(0.92)  LDD0939  [3]
 LDCM0342  AC77 HEK-293T C437(1.43); C440(1.12); C181(0.69)  LDD0940  [3]
 LDCM0343  AC78 HEK-293T C437(1.13); C440(1.14); C181(1.09)  LDD0941  [3]
 LDCM0344  AC79 HEK-293T C437(1.51); C440(1.15); C181(1.02)  LDD0942  [3]
 LDCM0345  AC8 HCT 116 C181(0.87)  LDD0662  [3]
 LDCM0346  AC80 HEK-293T C437(1.52); C440(1.33); C181(0.75)  LDD0944  [3]
 LDCM0347  AC81 HEK-293T C437(1.55); C440(1.35); C181(0.97)  LDD0945  [3]
 LDCM0348  AC82 HEK-293T C437(2.09); C440(1.45); C181(0.59)  LDD0946  [3]
 LDCM0349  AC83 HCT 116 C437(0.87); C440(0.87)  LDD0666  [3]
 LDCM0350  AC84 HCT 116 C437(0.86); C440(0.86)  LDD0667  [3]
 LDCM0351  AC85 HCT 116 C437(1.16); C440(1.16)  LDD0668  [3]
 LDCM0352  AC86 HCT 116 C437(0.97); C440(0.97)  LDD0669  [3]
 LDCM0353  AC87 HCT 116 C437(0.91); C440(0.91)  LDD0670  [3]
 LDCM0354  AC88 HCT 116 C437(0.81); C440(0.81)  LDD0671  [3]
 LDCM0355  AC89 HCT 116 C437(0.86); C440(0.86)  LDD0672  [3]
 LDCM0357  AC90 HCT 116 C437(0.76); C440(0.76)  LDD0674  [3]
 LDCM0358  AC91 HCT 116 C437(1.12); C440(1.12)  LDD0675  [3]
 LDCM0359  AC92 HCT 116 C437(0.99); C440(0.99)  LDD0676  [3]
 LDCM0360  AC93 HCT 116 C437(0.83); C440(0.83)  LDD0677  [3]
 LDCM0361  AC94 HCT 116 C437(0.93); C440(0.93)  LDD0678  [3]
 LDCM0362  AC95 HCT 116 C437(0.83); C440(0.83)  LDD0679  [3]
 LDCM0363  AC96 HCT 116 C437(0.99); C440(0.99)  LDD0680  [3]
 LDCM0364  AC97 HCT 116 C437(0.78); C440(0.78)  LDD0681  [3]
 LDCM0365  AC98 HCT 116 C437(0.70); C440(0.70)  LDD0682  [3]
 LDCM0366  AC99 HCT 116 C437(0.80); C440(0.80)  LDD0683  [3]
 LDCM0248  AKOS034007472 HCT 116 C181(0.87)  LDD0565  [3]
 LDCM0356  AKOS034007680 HCT 116 C181(1.06)  LDD0673  [3]
 LDCM0275  AKOS034007705 HCT 116 C181(0.90)  LDD0592  [3]
 LDCM0102  BDHI 8 Jurkat C55(19.10)  LDD0204  [5]
 LDCM0367  CL1 HCT 116 C181(0.95)  LDD0684  [3]
 LDCM0368  CL10 HCT 116 C181(0.86)  LDD0685  [3]
 LDCM0369  CL100 HCT 116 C181(1.08)  LDD0686  [3]
 LDCM0370  CL101 HCT 116 C181(0.67)  LDD0687  [3]
 LDCM0371  CL102 HCT 116 C181(0.72)  LDD0688  [3]
 LDCM0372  CL103 HCT 116 C181(0.91)  LDD0689  [3]
 LDCM0373  CL104 HCT 116 C181(0.86)  LDD0690  [3]
 LDCM0374  CL105 HEK-293T C440(0.96)  LDD0972  [3]
 LDCM0375  CL106 HEK-293T C440(0.92)  LDD0973  [3]
 LDCM0376  CL107 HEK-293T C440(1.25)  LDD0974  [3]
 LDCM0377  CL108 HEK-293T C440(1.00)  LDD0975  [3]
 LDCM0378  CL109 HEK-293T C440(1.32)  LDD0976  [3]
 LDCM0379  CL11 HCT 116 C181(1.02)  LDD0696  [3]
 LDCM0380  CL110 HEK-293T C440(1.45)  LDD0978  [3]
 LDCM0381  CL111 HEK-293T C440(1.32)  LDD0979  [3]
 LDCM0382  CL112 HEK-293T C440(0.93); C181(1.34)  LDD0980  [3]
 LDCM0383  CL113 HEK-293T C440(1.26); C181(0.97)  LDD0981  [3]
 LDCM0384  CL114 HEK-293T C440(1.86); C181(1.00)  LDD0982  [3]
 LDCM0385  CL115 HEK-293T C440(1.58); C181(0.85)  LDD0983  [3]
 LDCM0386  CL116 HEK-293T C440(1.35); C181(0.54)  LDD0984  [3]
 LDCM0387  CL117 HCT 116 C437(0.81); C440(0.81); C181(1.06)  LDD0704  [3]
 LDCM0388  CL118 HCT 116 C181(0.97); C437(0.98); C440(0.98)  LDD0705  [3]
 LDCM0389  CL119 HCT 116 C437(1.12); C440(1.12); C181(1.20)  LDD0706  [3]
 LDCM0390  CL12 HCT 116 C181(0.96)  LDD0707  [3]
 LDCM0391  CL120 HCT 116 C437(0.86); C440(0.86); C181(1.04)  LDD0708  [3]
 LDCM0392  CL121 HEK-293T C440(1.18)  LDD0990  [3]
 LDCM0393  CL122 HEK-293T C440(1.13)  LDD0991  [3]
 LDCM0394  CL123 HEK-293T C440(1.05)  LDD0992  [3]
 LDCM0395  CL124 HEK-293T C440(1.16)  LDD0993  [3]
 LDCM0396  CL125 HCT 116 C437(0.78); C440(0.78)  LDD0713  [3]
 LDCM0397  CL126 HCT 116 C437(0.86); C440(0.86)  LDD0714  [3]
 LDCM0398  CL127 HCT 116 C437(0.71); C440(0.71)  LDD0715  [3]
 LDCM0399  CL128 HCT 116 C437(0.81); C440(0.81)  LDD0716  [3]
 LDCM0400  CL13 HCT 116 C181(0.81)  LDD0717  [3]
 LDCM0401  CL14 HCT 116 C181(0.86)  LDD0718  [3]
 LDCM0402  CL15 HCT 116 C181(0.76)  LDD0719  [3]
 LDCM0403  CL16 HEK-293T C440(0.96)  LDD1001  [3]
 LDCM0404  CL17 HEK-293T C440(0.89)  LDD1002  [3]
 LDCM0405  CL18 HEK-293T C440(1.32)  LDD1003  [3]
 LDCM0406  CL19 HEK-293T C440(0.86)  LDD1004  [3]
 LDCM0407  CL2 HCT 116 C181(0.87)  LDD0724  [3]
 LDCM0408  CL20 HEK-293T C440(0.98)  LDD1006  [3]
 LDCM0409  CL21 HEK-293T C440(1.16)  LDD1007  [3]
 LDCM0410  CL22 HEK-293T C440(1.19)  LDD1008  [3]
 LDCM0411  CL23 HEK-293T C440(0.91)  LDD1009  [3]
 LDCM0412  CL24 HEK-293T C440(1.08)  LDD1010  [3]
 LDCM0413  CL25 HEK-293T C440(0.94)  LDD1011  [3]
 LDCM0414  CL26 HEK-293T C440(1.09)  LDD1012  [3]
 LDCM0415  CL27 HEK-293T C440(1.28)  LDD1013  [3]
 LDCM0416  CL28 HEK-293T C440(1.09)  LDD1014  [3]
 LDCM0417  CL29 HEK-293T C440(0.96)  LDD1015  [3]
 LDCM0418  CL3 HCT 116 C181(0.88)  LDD0735  [3]
 LDCM0419  CL30 HEK-293T C440(1.04)  LDD1017  [3]
 LDCM0420  CL31 HEK-293T C440(1.02)  LDD1018  [3]
 LDCM0421  CL32 HEK-293T C440(1.02)  LDD1019  [3]
 LDCM0422  CL33 HEK-293T C440(0.91)  LDD1020  [3]
 LDCM0423  CL34 HEK-293T C440(0.96)  LDD1021  [3]
 LDCM0424  CL35 HEK-293T C440(1.13)  LDD1022  [3]
 LDCM0425  CL36 HEK-293T C440(1.12)  LDD1023  [3]
 LDCM0426  CL37 HEK-293T C440(0.88)  LDD1024  [3]
 LDCM0428  CL39 HEK-293T C440(1.03)  LDD1026  [3]
 LDCM0429  CL4 HCT 116 C181(0.74)  LDD0746  [3]
 LDCM0430  CL40 HEK-293T C440(0.93)  LDD1028  [3]
 LDCM0431  CL41 HEK-293T C440(1.00)  LDD1029  [3]
 LDCM0432  CL42 HEK-293T C440(0.99)  LDD1030  [3]
 LDCM0433  CL43 HEK-293T C440(0.95)  LDD1031  [3]
 LDCM0434  CL44 HEK-293T C440(1.04)  LDD1032  [3]
 LDCM0435  CL45 HEK-293T C440(1.13)  LDD1033  [3]
 LDCM0436  CL46 HEK-293T C440(1.43)  LDD1034  [3]
 LDCM0437  CL47 HEK-293T C440(1.19)  LDD1035  [3]
 LDCM0438  CL48 HEK-293T C440(1.38)  LDD1036  [3]
 LDCM0439  CL49 HEK-293T C440(1.23)  LDD1037  [3]
 LDCM0440  CL5 HCT 116 C181(0.85)  LDD0757  [3]
 LDCM0441  CL50 HEK-293T C440(1.80)  LDD1039  [3]
 LDCM0442  CL51 HEK-293T C440(1.10)  LDD1040  [3]
 LDCM0443  CL52 HEK-293T C440(0.81)  LDD1041  [3]
 LDCM0444  CL53 HEK-293T C440(0.90)  LDD1042  [3]
 LDCM0445  CL54 HEK-293T C440(1.06)  LDD1043  [3]
 LDCM0446  CL55 HEK-293T C440(1.22)  LDD1044  [3]
 LDCM0447  CL56 HEK-293T C440(0.91)  LDD1045  [3]
 LDCM0448  CL57 HEK-293T C440(1.00)  LDD1046  [3]
 LDCM0449  CL58 HEK-293T C440(0.98)  LDD1047  [3]
 LDCM0450  CL59 HEK-293T C440(1.38)  LDD1048  [3]
 LDCM0451  CL6 HCT 116 C181(0.83)  LDD0768  [3]
 LDCM0452  CL60 HEK-293T C440(1.70)  LDD1050  [3]
 LDCM0453  CL61 HEK-293T C437(1.02); C440(0.96)  LDD1051  [3]
 LDCM0454  CL62 HEK-293T C437(1.22); C440(0.87)  LDD1052  [3]
 LDCM0455  CL63 HEK-293T C437(1.49); C440(1.10)  LDD1053  [3]
 LDCM0456  CL64 HEK-293T C437(1.18); C440(0.85)  LDD1054  [3]
 LDCM0457  CL65 HEK-293T C437(1.13); C440(1.00)  LDD1055  [3]
 LDCM0458  CL66 HEK-293T C437(1.22); C440(0.83)  LDD1056  [3]
 LDCM0459  CL67 HEK-293T C437(1.17); C440(0.89)  LDD1057  [3]
 LDCM0460  CL68 HEK-293T C437(1.37); C440(0.93)  LDD1058  [3]
 LDCM0461  CL69 HEK-293T C437(1.24); C440(1.23)  LDD1059  [3]
 LDCM0462  CL7 HCT 116 C181(0.88)  LDD0779  [3]
 LDCM0463  CL70 HEK-293T C437(1.14); C440(1.25)  LDD1061  [3]
 LDCM0464  CL71 HEK-293T C437(1.44); C440(1.03)  LDD1062  [3]
 LDCM0465  CL72 HEK-293T C437(1.06); C440(1.04)  LDD1063  [3]
 LDCM0466  CL73 HEK-293T C437(1.29); C440(0.95)  LDD1064  [3]
 LDCM0467  CL74 HEK-293T C437(1.55); C440(1.30)  LDD1065  [3]
 LDCM0469  CL76 HEK-293T C440(1.30)  LDD1067  [3]
 LDCM0470  CL77 HEK-293T C440(0.96)  LDD1068  [3]
 LDCM0471  CL78 HEK-293T C440(1.00)  LDD1069  [3]
 LDCM0472  CL79 HEK-293T C440(0.91)  LDD1070  [3]
 LDCM0473  CL8 HCT 116 C181(1.06)  LDD0790  [3]
 LDCM0474  CL80 HEK-293T C440(1.05)  LDD1072  [3]
 LDCM0475  CL81 HEK-293T C440(1.08)  LDD1073  [3]
 LDCM0476  CL82 HEK-293T C440(1.53)  LDD1074  [3]
 LDCM0477  CL83 HEK-293T C440(1.44)  LDD1075  [3]
 LDCM0478  CL84 HEK-293T C440(0.98)  LDD1076  [3]
 LDCM0479  CL85 HEK-293T C440(1.06)  LDD1077  [3]
 LDCM0480  CL86 HEK-293T C440(0.99)  LDD1078  [3]
 LDCM0481  CL87 HEK-293T C440(0.71)  LDD1079  [3]
 LDCM0482  CL88 HEK-293T C440(1.40)  LDD1080  [3]
 LDCM0483  CL89 HEK-293T C440(0.98)  LDD1081  [3]
 LDCM0484  CL9 HCT 116 C181(0.81)  LDD0801  [3]
 LDCM0485  CL90 HEK-293T C440(1.17)  LDD1083  [3]
 LDCM0486  CL91 HCT 116 C181(0.76)  LDD0803  [3]
 LDCM0487  CL92 HCT 116 C181(0.87)  LDD0804  [3]
 LDCM0488  CL93 HCT 116 C181(0.87)  LDD0805  [3]
 LDCM0489  CL94 HCT 116 C181(0.85)  LDD0806  [3]
 LDCM0490  CL95 HCT 116 C181(0.92)  LDD0807  [3]
 LDCM0491  CL96 HCT 116 C181(0.96)  LDD0808  [3]
 LDCM0492  CL97 HCT 116 C181(0.94)  LDD0809  [3]
 LDCM0493  CL98 HCT 116 C181(0.84)  LDD0810  [3]
 LDCM0494  CL99 HCT 116 C181(0.96)  LDD0811  [3]
 LDCM0495  E2913 HEK-293T C181(0.99); C300(0.98)  LDD1698  [6]
 LDCM0468  Fragment33 HEK-293T C437(1.50); C440(0.99)  LDD1066  [3]
 LDCM0427  Fragment51 HEK-293T C440(1.15)  LDD1025  [3]
 LDCM0022  KB02 HCT 116 C181(1.53)  LDD0080  [3]
 LDCM0023  KB03 HCT 116 C181(1.06)  LDD0081  [3]
 LDCM0024  KB05 HCT 116 C181(1.71)  LDD0082  [3]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 12 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Choline-phosphate cytidylyltransferase A (PCYT1A) Cytidylyltransferase family P49585
Phosphopantothenoylcysteine decarboxylase (PPCDC) HFCD (homooligomeric flavin containing Cys decarboxylase) superfamily Q96CD2
Proteasome subunit beta type-1 (PSMB1) Peptidase T1B family P20618
Serine/threonine-protein kinase VRK1 (VRK1) CK1 Ser/Thr protein kinase family Q99986
Dual specificity protein kinase CLK2 (CLK2) CMGC Ser/Thr protein kinase family P49760
Dual specificity protein kinase CLK3 (CLK3) CMGC Ser/Thr protein kinase family P49761
Mitogen-activated protein kinase 1 (MAPK1) CMGC Ser/Thr protein kinase family P28482
E3 ubiquitin-protein ligase RNF8 (RNF8) RNF8 family O76064
Dynamin-2 (DNM2) Dynamin/Fzo/YdjA family P50570
Neuronal-specific septin-3 (SEPTIN3) Septin GTPase family Q9UH03
Ubiquitin-conjugating enzyme E2 D2 (UBE2D2) Ubiquitin-conjugating enzyme family P62837
Fibronectin type III and SPRY domain-containing protein 2 (FSD2) . A1L4K1
Transporter and channel
Click To Hide/Show 4 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
WASH complex subunit 3 (WASHC3) CCDC53 family Q9Y3C0
Membrane-associated progesterone receptor component 2 (PGRMC2) Cytochrome b5 family O15173
Sodium channel regulatory subunit beta-3 (SCN3B) Sodium channel auxiliary subunit SCN3B family Q9NY72
Transmembrane protein 79 (TMEM79) . Q9BSE2
Transcription factor
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
G-protein coupled receptor-associated sorting protein 2 (GPRASP2) GPRASP family Q96D09
Zinc finger protein 496 (ZNF496) Krueppel C2H2-type zinc-finger protein family Q96IT1
Other
Click To Hide/Show 24 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Angiomotin-like protein 2 (AMOTL2) Angiomotin family Q9Y2J4
Calcium-binding and coiled-coil domain-containing protein 1 (CALCOCO1) CALCOCO family Q9P1Z2
DNA damage-inducible transcript 4-like protein (DDIT4L) DDIT4 family Q96D03
Protein FAM118B (FAM118B) FAM118 family Q9BPY3
Protein FAM9B (FAM9B) FAM9 family Q8IZU0
Keratin-associated protein 10-8 (KRTAP10-8) KRTAP type 10 family P60410
Keratin-associated protein 9-2 (KRTAP9-2) KRTAP type 9 family Q9BYQ4
Keratin-associated protein 9-8 (KRTAP9-8) KRTAP type 9 family Q9BYQ0
Mitotic spindle assembly checkpoint protein MAD1 (MAD1L1) MAD1 family Q9Y6D9
Paraneoplastic antigen Ma2 (PNMA2) PNMA family Q9UL42
Syntaxin-11 (STX11) Syntaxin family O75558
TOMM20-like protein 1 (TOMM20L) Tom20 family Q6UXN7
Actin nucleation-promoting factor WASL (WASL) . O00401
Cation channel sperm-associated targeting subunit tau (C2CD6) . Q53TS8
Centrosomal protein of 44 kDa (CEP44) . Q9C0F1
Coiled-coil domain-containing protein 50 (CCDC50) . Q8IVM0
Deoxynucleotidyltransferase terminal-interacting protein 2 (DNTTIP2) . Q5QJE6
KN motif and ankyrin repeat domain-containing protein 2 (KANK2) . Q63ZY3
LIM domain transcription factor LMO4 (LMO4) . P61968
Mediator of DNA damage checkpoint protein 1 (MDC1) . Q14676
PRKCA-binding protein (PICK1) . Q9NRD5
RNA binding protein fox-1 homolog 2 (RBFOX2) . O43251
TNFAIP3-interacting protein 1 (TNIP1) . Q15025
Zinc finger protein 346 (ZNF346) . Q9UL40

References

1 Oxidant-Induced Bioconjugation for Protein Labeling in Live Cells. ACS Chem Biol. 2023 Jan 20;18(1):112-122. doi: 10.1021/acschembio.2c00740. Epub 2022 Dec 21.
2 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
3 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
4 Cyclopropenone, Cyclopropeniminium Ion, and Cyclopropenethione as Novel Electrophilic Warheads for Potential Target Discovery of Triple-Negative Breast Cancer. J Med Chem. 2023 Feb 23;66(4):2851-2864. doi: 10.1021/acs.jmedchem.2c01889. Epub 2023 Feb 10.
5 Covalent Inhibition by a Natural Product-Inspired Latent Electrophile. J Am Chem Soc. 2023 May 24;145(20):11097-11109. doi: 10.1021/jacs.3c00598. Epub 2023 May 15.
6 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402