General Information of Target

Target ID LDTP02688
Target Name HLA class I histocompatibility antigen, alpha chain E (HLA-E)
Gene Name HLA-E
Gene ID 3133
Synonyms
HLA-6.2; HLAE; HLA class I histocompatibility antigen, alpha chain E; MHC class I antigen E) [Cleaved into: Soluble HLA class I histocompatibility antigen, alpha chain E; sHLA-E)]
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND
AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH
GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY
LEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQ
DGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ
PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHSL
Target Bioclass
Immunoglobulin
Family
MHC class I family
Subcellular location
Secreted; Cell membrane
Function
Non-classical major histocompatibility class Ib molecule involved in immune self-nonself discrimination. In complex with B2M/beta-2-microglobulin binds nonamer self-peptides derived from the signal sequence of classical MHC class Ia molecules (VL9 peptides - VMAPRT[V/L][L/V/I/F]L). Peptide-bound HLA-E-B2M heterotrimeric complex primarily functions as a ligand for natural killer (NK) cell inhibitory receptor KLRD1-KLRC1, enabling NK cells to monitor the expression of other MHC class I molecules in healthy cells and to tolerate self. Upon cellular stress, preferentially binds signal sequence-derived peptides from stress-induced chaperones and is no longer recognized by NK cell inhibitory receptor KLRD1-KLRC1, resulting in impaired protection from NK cells. Binds signal sequence-derived peptides from non-classical MHC class Ib HLA-G molecules and acts as a ligand for NK cell activating receptor KLRD1-KLRC2, likely playing a role in the generation and effector functions of adaptive NK cells and in maternal-fetal tolerance during pregnancy. Besides self-peptides, can also bind and present pathogen-derived peptides conformationally similar to VL9 peptides to alpha-beta T cell receptor (TCR) on unconventional CD8-positive cytotoxic T cells, ultimately triggering antimicrobial immune response. Presents HIV gag peptides (immunodominant KAFSPEVIPMF and subdominant KALGPAATL epitopes) predominantly to CD8-positive T cell clones expressing a TRAV17-containing TCR, triggering HLA-E-restricted T cell responses. Presents mycobacterial peptides to HLA-E-restricted CD8-positive T cells eliciting both cytotoxic and immunoregulatory functions.; (Microbial infection) Viruses like human cytomegalovirus have evolved an escape mechanism whereby virus-induced down-regulation of host MHC class I molecules is coupled to the binding of viral peptides to HLA-E, restoring HLA-E expression and inducing HLA-E-dependent NK cell immune tolerance to infected cells.; (Microbial infection) May bind HIV-1 gag/Capsid protein p24-derived peptide (AISPRTLNA) on infected cells and may inhibit NK cell cytotoxicity, a mechanism that allows HIV-1 to escape immune recognition.; (Microbial infection) Upon SARS-CoV-2 infection, may contribute to functional exhaustion of cytotoxic NK cells and CD8-positive T cells. Binds SARS-CoV-2 S/Spike protein S1-derived peptide (LQPRTFLL) expressed on the surface of lung epithelial cells, inducing NK cell exhaustion and dampening of antiviral immune surveillance.
Uniprot ID
P13747
Ensemble ID
ENST00000376630.5
HGNC ID
HGNC:4962

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 5 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
IPM
 Probe Info 
C280(2.34)  LDD1702  [1]
DBIA
 Probe Info 
C185(1.17)  LDD0532  [2]
IA-alkyne
 Probe Info 
N.A.  LDD0166  [3]
Lodoacetamide azide
 Probe Info 
N.A.  LDD0037  [4]
NAIA_4
 Probe Info 
N.A.  LDD2226  [5]
PAL-AfBPP Probe
Click To Hide/Show 4 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
IMP2070
 Probe Info 
7.29  LDD0280  [6]
C187
 Probe Info 
58.08  LDD1865  [7]
C191
 Probe Info 
32.45  LDD1868  [7]
C193
 Probe Info 
12.47  LDD1869  [7]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0215  AC10 HCT 116 C185(1.17)  LDD0532  [2]
 LDCM0226  AC11 HCT 116 C185(0.98)  LDD0543  [2]
 LDCM0237  AC12 HCT 116 C185(0.90)  LDD0554  [2]
 LDCM0246  AC128 HCT 116 C185(1.21)  LDD0563  [2]
 LDCM0247  AC129 HCT 116 C185(1.25)  LDD0564  [2]
 LDCM0249  AC130 HCT 116 C185(1.11)  LDD0566  [2]
 LDCM0250  AC131 HCT 116 C185(1.02)  LDD0567  [2]
 LDCM0251  AC132 HCT 116 C185(0.89)  LDD0568  [2]
 LDCM0252  AC133 HCT 116 C185(1.10)  LDD0569  [2]
 LDCM0253  AC134 HCT 116 C185(1.17)  LDD0570  [2]
 LDCM0254  AC135 HCT 116 C185(1.19)  LDD0571  [2]
 LDCM0255  AC136 HCT 116 C185(0.96)  LDD0572  [2]
 LDCM0256  AC137 HCT 116 C185(1.00)  LDD0573  [2]
 LDCM0257  AC138 HCT 116 C185(0.95)  LDD0574  [2]
 LDCM0258  AC139 HCT 116 C185(1.39)  LDD0575  [2]
 LDCM0259  AC14 HCT 116 C185(1.09)  LDD0576  [2]
 LDCM0260  AC140 HCT 116 C185(1.33)  LDD0577  [2]
 LDCM0261  AC141 HCT 116 C185(1.10)  LDD0578  [2]
 LDCM0262  AC142 HCT 116 C185(1.13)  LDD0579  [2]
 LDCM0270  AC15 HCT 116 C185(0.94)  LDD0587  [2]
 LDCM0276  AC17 HCT 116 C185(1.20)  LDD0593  [2]
 LDCM0277  AC18 HCT 116 C185(1.29)  LDD0594  [2]
 LDCM0278  AC19 HCT 116 C185(1.26)  LDD0595  [2]
 LDCM0280  AC20 HCT 116 C185(1.19)  LDD0597  [2]
 LDCM0281  AC21 HCT 116 C185(1.21)  LDD0598  [2]
 LDCM0282  AC22 HCT 116 C185(1.12)  LDD0599  [2]
 LDCM0283  AC23 HCT 116 C185(1.32)  LDD0600  [2]
 LDCM0284  AC24 HCT 116 C185(1.18)  LDD0601  [2]
 LDCM0323  AC6 HCT 116 C185(1.02)  LDD0640  [2]
 LDCM0334  AC7 HCT 116 C185(1.02)  LDD0651  [2]
 LDCM0345  AC8 HCT 116 C185(1.11)  LDD0662  [2]
 LDCM0248  AKOS034007472 HCT 116 C185(1.10)  LDD0565  [2]
 LDCM0356  AKOS034007680 HCT 116 C185(1.07)  LDD0673  [2]
 LDCM0275  AKOS034007705 HCT 116 C185(1.34)  LDD0592  [2]
 LDCM0370  CL101 HCT 116 C185(1.03)  LDD0687  [2]
 LDCM0371  CL102 HCT 116 C185(0.95)  LDD0688  [2]
 LDCM0372  CL103 HCT 116 C185(0.92)  LDD0689  [2]
 LDCM0373  CL104 HCT 116 C185(0.96)  LDD0690  [2]
 LDCM0374  CL105 HCT 116 C185(1.29)  LDD0691  [2]
 LDCM0375  CL106 HCT 116 C185(1.47)  LDD0692  [2]
 LDCM0376  CL107 HCT 116 C185(1.37)  LDD0693  [2]
 LDCM0377  CL108 HCT 116 C185(1.56)  LDD0694  [2]
 LDCM0378  CL109 HCT 116 C185(1.37)  LDD0695  [2]
 LDCM0380  CL110 HCT 116 C185(1.49)  LDD0697  [2]
 LDCM0381  CL111 HCT 116 C185(1.20)  LDD0698  [2]
 LDCM0436  CL46 HCT 116 C185(0.77)  LDD0753  [2]
 LDCM0437  CL47 HCT 116 C185(1.04)  LDD0754  [2]
 LDCM0438  CL48 HCT 116 C185(0.72)  LDD0755  [2]
 LDCM0439  CL49 HCT 116 C185(0.77)  LDD0756  [2]
 LDCM0441  CL50 HCT 116 C185(0.93)  LDD0758  [2]
 LDCM0442  CL51 HCT 116 C185(0.78)  LDD0759  [2]
 LDCM0443  CL52 HCT 116 C185(0.73)  LDD0760  [2]
 LDCM0444  CL53 HCT 116 C185(0.72)  LDD0761  [2]
 LDCM0445  CL54 HCT 116 C185(0.70)  LDD0762  [2]
 LDCM0446  CL55 HCT 116 C185(0.71)  LDD0763  [2]
 LDCM0447  CL56 HCT 116 C185(0.76)  LDD0764  [2]
 LDCM0448  CL57 HCT 116 C185(0.72)  LDD0765  [2]
 LDCM0449  CL58 HCT 116 C185(0.70)  LDD0766  [2]
 LDCM0450  CL59 HCT 116 C185(0.90)  LDD0767  [2]
 LDCM0452  CL60 HCT 116 C185(0.96)  LDD0769  [2]
 LDCM0453  CL61 HCT 116 C185(0.93)  LDD0770  [2]
 LDCM0454  CL62 HCT 116 C185(1.08)  LDD0771  [2]
 LDCM0455  CL63 HCT 116 C185(1.05)  LDD0772  [2]
 LDCM0456  CL64 HCT 116 C185(1.14)  LDD0773  [2]
 LDCM0457  CL65 HCT 116 C185(1.00)  LDD0774  [2]
 LDCM0458  CL66 HCT 116 C185(1.10)  LDD0775  [2]
 LDCM0459  CL67 HCT 116 C185(1.16)  LDD0776  [2]
 LDCM0460  CL68 HCT 116 C185(1.00)  LDD0777  [2]
 LDCM0461  CL69 HCT 116 C185(1.31)  LDD0778  [2]
 LDCM0463  CL70 HCT 116 C185(1.03)  LDD0780  [2]
 LDCM0464  CL71 HCT 116 C185(1.07)  LDD0781  [2]
 LDCM0465  CL72 HCT 116 C185(1.09)  LDD0782  [2]
 LDCM0466  CL73 HCT 116 C185(1.13)  LDD0783  [2]
 LDCM0467  CL74 HCT 116 C185(0.99)  LDD0784  [2]
 LDCM0213  Electrophilic fragment 2 MDA-MB-231 C280(2.34)  LDD1702  [1]
 LDCM0468  Fragment33 HCT 116 C185(1.27)  LDD0785  [2]
 LDCM0022  KB02 CMK C185(2.02)  LDD2302  [8]
 LDCM0023  KB03 EoL-1 C280(2.53)  LDD2741  [8]
 LDCM0024  KB05 SKMEL24 C280(2.03)  LDD3323  [8]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Immunoglobulin
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
HLA class I histocompatibility antigen, alpha chain F (HLA-F) MHC class I family P30511

References

1 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
2 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
3 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
4 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
5 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
6 A Probe for NLRP3 Inflammasome Inhibitor MCC950 Identifies Carbonic Anhydrase 2 as a Novel Target. ACS Chem Biol. 2021 Jun 18;16(6):982-990. doi: 10.1021/acschembio.1c00218. Epub 2021 May 18.
Mass spectrometry data entry: PXD024915 , PXD024913
7 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587
8 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840