Details of the Target

General Information of Target

Target ID LDTP12989
Target Name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related (HMG20B)
Gene Name HMG20B
Gene ID 10362
Synonyms
BRAF35; HMGX2; HMGXB2; SMARCE1R; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related; SMARCE1-related protein; BRCA2-associated factor 35; HMG box-containing protein 20B; HMG domain-containing protein 2; HMG domain-containing protein HMGX2; Sox-like transcriptional factor; Structural DNA-binding protein BRAF35
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MSTKPDMIQKCLWLEILMGIFIAGTLSLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECL
RENIAFELPQEFLQYTQPMKRDIKKAFYEMSLQAFNIFSQHTFKYWKERHLKQIQIGLDQ
QAEYLNQCLEEDKNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSD
CAWEIVRVEIRRCLYYFYKFTALFRRK
Target Bioclass
Transcription factor
Subcellular location
Nucleus
Function Required for correct progression through G2 phase of the cell cycle and entry into mitosis. Required for RCOR1/CoREST mediated repression of neuronal specific gene promoters.
Uniprot ID
Q9P0W2
Ensemble ID
ENST00000333651.11
HGNC ID
HGNC:5002

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
HCC1806 SNV: p.E48K .
HT SNV: p.D294G .
MDAMB231 SNV: p.E202Q .
NCIH1792 SNV: p.L301F .
REH SNV: p.A106T .
RPMI7951 Insertion: p.K127RfsTer6 .
RVH421 SNV: p.R62Q .
TOV21G SNV: p.A40E .
UACC257 SNV: p.F282L .
YSCCC SNV: p.E214K .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 8 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
m-APA
 Probe Info  		13.40  LDD0402  [1]
DBIA
 Probe Info  		C75(2.48)  LDD3374  [2]
AHL-Pu-1
 Probe Info  		C177(2.13)  LDD0168  [3]
HPAP
 Probe Info  		3.45  LDD0063  [4]
Acrolein
 Probe Info  		N.A.  LDD0227  [5]
IA-alkyne
 Probe Info  		N.A.  LDD0149  [6]
IPM
 Probe Info  		N.A.  LDD2156  [7]
YN-1
 Probe Info  		S228(0.00); R231(0.00)  LDD0446  [8]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0025  4SU-RNA HEK-293T C177(2.13)  LDD0168  [3]
 LDCM0214  AC1 HEK-293T C177(1.10)  LDD1507  [9]
 LDCM0215  AC10 HEK-293T C177(0.91)  LDD1508  [9]
 LDCM0226  AC11 HEK-293T C177(0.98)  LDD1509  [9]
 LDCM0237  AC12 HEK-293T C177(0.94)  LDD1510  [9]
 LDCM0259  AC14 HEK-293T C177(0.99)  LDD1512  [9]
 LDCM0270  AC15 HEK-293T C177(1.01)  LDD1513  [9]
 LDCM0276  AC17 HEK-293T C177(0.94)  LDD1515  [9]
 LDCM0277  AC18 HEK-293T C177(0.96)  LDD1516  [9]
 LDCM0278  AC19 HEK-293T C177(1.14)  LDD1517  [9]
 LDCM0279  AC2 HEK-293T C177(0.87)  LDD1518  [9]
 LDCM0280  AC20 HEK-293T C177(1.09)  LDD1519  [9]
 LDCM0281  AC21 HEK-293T C177(1.00)  LDD1520  [9]
 LDCM0282  AC22 HEK-293T C177(0.99)  LDD1521  [9]
 LDCM0283  AC23 HEK-293T C177(1.04)  LDD1522  [9]
 LDCM0284  AC24 HEK-293T C177(1.02)  LDD1523  [9]
 LDCM0285  AC25 HEK-293T C177(0.92)  LDD1524  [9]
 LDCM0286  AC26 HEK-293T C177(0.92)  LDD1525  [9]
 LDCM0287  AC27 HEK-293T C177(1.03)  LDD1526  [9]
 LDCM0288  AC28 HEK-293T C177(0.91)  LDD1527  [9]
 LDCM0289  AC29 HEK-293T C177(1.09)  LDD1528  [9]
 LDCM0290  AC3 HEK-293T C177(0.85)  LDD1529  [9]
 LDCM0291  AC30 HEK-293T C177(0.92)  LDD1530  [9]
 LDCM0292  AC31 HEK-293T C177(1.05)  LDD1531  [9]
 LDCM0293  AC32 HEK-293T C177(0.99)  LDD1532  [9]
 LDCM0294  AC33 HEK-293T C177(1.12)  LDD1533  [9]
 LDCM0295  AC34 HEK-293T C177(1.06)  LDD1534  [9]
 LDCM0296  AC35 HEK-293T C177(0.83)  LDD1535  [9]
 LDCM0297  AC36 HEK-293T C177(1.23)  LDD1536  [9]
 LDCM0298  AC37 HEK-293T C177(1.05)  LDD1537  [9]
 LDCM0299  AC38 HEK-293T C177(0.92)  LDD1538  [9]
 LDCM0300  AC39 HEK-293T C177(0.97)  LDD1539  [9]
 LDCM0301  AC4 HEK-293T C177(1.11)  LDD1540  [9]
 LDCM0302  AC40 HEK-293T C177(0.97)  LDD1541  [9]
 LDCM0303  AC41 HEK-293T C177(0.98)  LDD1542  [9]
 LDCM0304  AC42 HEK-293T C177(0.95)  LDD1543  [9]
 LDCM0305  AC43 HEK-293T C177(0.91)  LDD1544  [9]
 LDCM0306  AC44 HEK-293T C177(1.19)  LDD1545  [9]
 LDCM0307  AC45 HEK-293T C177(1.12)  LDD1546  [9]
 LDCM0308  AC46 HEK-293T C177(0.90)  LDD1547  [9]
 LDCM0309  AC47 HEK-293T C177(1.05)  LDD1548  [9]
 LDCM0310  AC48 HEK-293T C177(1.09)  LDD1549  [9]
 LDCM0311  AC49 HEK-293T C177(1.20)  LDD1550  [9]
 LDCM0312  AC5 HEK-293T C177(1.08)  LDD1551  [9]
 LDCM0313  AC50 HEK-293T C177(0.96)  LDD1552  [9]
 LDCM0314  AC51 HEK-293T C177(0.89)  LDD1553  [9]
 LDCM0315  AC52 HEK-293T C177(1.00)  LDD1554  [9]
 LDCM0316  AC53 HEK-293T C177(0.95)  LDD1555  [9]
 LDCM0317  AC54 HEK-293T C177(0.98)  LDD1556  [9]
 LDCM0318  AC55 HEK-293T C177(1.17)  LDD1557  [9]
 LDCM0319  AC56 HEK-293T C177(1.02)  LDD1558  [9]
 LDCM0320  AC57 HEK-293T C177(1.19)  LDD1559  [9]
 LDCM0321  AC58 HEK-293T C177(0.98)  LDD1560  [9]
 LDCM0322  AC59 HEK-293T C177(0.96)  LDD1561  [9]
 LDCM0323  AC6 HEK-293T C177(1.11)  LDD1562  [9]
 LDCM0324  AC60 HEK-293T C177(1.05)  LDD1563  [9]
 LDCM0325  AC61 HEK-293T C177(1.19)  LDD1564  [9]
 LDCM0326  AC62 HEK-293T C177(0.99)  LDD1565  [9]
 LDCM0327  AC63 HEK-293T C177(1.07)  LDD1566  [9]
 LDCM0328  AC64 HEK-293T C177(0.95)  LDD1567  [9]
 LDCM0334  AC7 HEK-293T C177(1.06)  LDD1568  [9]
 LDCM0345  AC8 HEK-293T C177(1.19)  LDD1569  [9]
 LDCM0248  AKOS034007472 HEK-293T C177(0.90)  LDD1511  [9]
 LDCM0356  AKOS034007680 HEK-293T C177(0.93)  LDD1570  [9]
 LDCM0275  AKOS034007705 HEK-293T C177(1.14)  LDD1514  [9]
 LDCM0156  Aniline NCI-H1299 11.55  LDD0403  [1]
 LDCM0367  CL1 HEK-293T C177(0.95)  LDD1571  [9]
 LDCM0368  CL10 HEK-293T C177(0.87)  LDD1572  [9]
 LDCM0369  CL100 HEK-293T C177(0.89)  LDD1573  [9]
 LDCM0370  CL101 HEK-293T C177(1.03)  LDD1574  [9]
 LDCM0371  CL102 HEK-293T C177(1.06)  LDD1575  [9]
 LDCM0372  CL103 HEK-293T C177(1.17)  LDD1576  [9]
 LDCM0373  CL104 HEK-293T C177(1.05)  LDD1577  [9]
 LDCM0374  CL105 HEK-293T C177(0.95)  LDD1578  [9]
 LDCM0375  CL106 HEK-293T C177(0.97)  LDD1579  [9]
 LDCM0376  CL107 HEK-293T C177(1.08)  LDD1580  [9]
 LDCM0377  CL108 HEK-293T C177(0.96)  LDD1581  [9]
 LDCM0378  CL109 HEK-293T C177(1.02)  LDD1582  [9]
 LDCM0379  CL11 HEK-293T C177(1.00)  LDD1583  [9]
 LDCM0380  CL110 HEK-293T C177(1.00)  LDD1584  [9]
 LDCM0381  CL111 HEK-293T C177(1.14)  LDD1585  [9]
 LDCM0382  CL112 HEK-293T C177(1.03)  LDD1586  [9]
 LDCM0383  CL113 HEK-293T C177(1.10)  LDD1587  [9]
 LDCM0384  CL114 HEK-293T C177(1.00)  LDD1588  [9]
 LDCM0385  CL115 HEK-293T C177(1.45)  LDD1589  [9]
 LDCM0386  CL116 HEK-293T C177(0.91)  LDD1590  [9]
 LDCM0387  CL117 HEK-293T C177(0.98)  LDD1591  [9]
 LDCM0388  CL118 HEK-293T C177(1.01)  LDD1592  [9]
 LDCM0389  CL119 HEK-293T C177(1.14)  LDD1593  [9]
 LDCM0390  CL12 HEK-293T C177(1.03)  LDD1594  [9]
 LDCM0391  CL120 HEK-293T C177(1.08)  LDD1595  [9]
 LDCM0392  CL121 HEK-293T C177(0.96)  LDD1596  [9]
 LDCM0393  CL122 HEK-293T C177(1.11)  LDD1597  [9]
 LDCM0394  CL123 HEK-293T C177(1.02)  LDD1598  [9]
 LDCM0395  CL124 HEK-293T C177(0.95)  LDD1599  [9]
 LDCM0396  CL125 HEK-293T C177(1.14)  LDD1600  [9]
 LDCM0397  CL126 HEK-293T C177(1.03)  LDD1601  [9]
 LDCM0398  CL127 HEK-293T C177(1.17)  LDD1602  [9]
 LDCM0399  CL128 HEK-293T C177(0.96)  LDD1603  [9]
 LDCM0400  CL13 HEK-293T C177(1.20)  LDD1604  [9]
 LDCM0401  CL14 HEK-293T C177(0.93)  LDD1605  [9]
 LDCM0402  CL15 HEK-293T C177(1.34)  LDD1606  [9]
 LDCM0403  CL16 HEK-293T C177(1.06)  LDD1607  [9]
 LDCM0404  CL17 HEK-293T C177(0.87)  LDD1608  [9]
 LDCM0405  CL18 HEK-293T C177(0.88)  LDD1609  [9]
 LDCM0406  CL19 HEK-293T C177(0.93)  LDD1610  [9]
 LDCM0407  CL2 HEK-293T C177(0.88)  LDD1611  [9]
 LDCM0408  CL20 HEK-293T C177(1.11)  LDD1612  [9]
 LDCM0409  CL21 HEK-293T C177(0.88)  LDD1613  [9]
 LDCM0410  CL22 HEK-293T C177(0.89)  LDD1614  [9]
 LDCM0411  CL23 HEK-293T C177(1.09)  LDD1615  [9]
 LDCM0412  CL24 HEK-293T C177(0.99)  LDD1616  [9]
 LDCM0413  CL25 HEK-293T C177(0.87)  LDD1617  [9]
 LDCM0414  CL26 HEK-293T C177(0.91)  LDD1618  [9]
 LDCM0415  CL27 HEK-293T C177(1.11)  LDD1619  [9]
 LDCM0416  CL28 HEK-293T C177(1.01)  LDD1620  [9]
 LDCM0417  CL29 HEK-293T C177(0.95)  LDD1621  [9]
 LDCM0418  CL3 HEK-293T C177(1.21)  LDD1622  [9]
 LDCM0419  CL30 HEK-293T C177(0.96)  LDD1623  [9]
 LDCM0420  CL31 HEK-293T C177(0.84)  LDD1624  [9]
 LDCM0421  CL32 HEK-293T C177(0.95)  LDD1625  [9]
 LDCM0422  CL33 HEK-293T C177(0.91)  LDD1626  [9]
 LDCM0423  CL34 HEK-293T C177(0.94)  LDD1627  [9]
 LDCM0424  CL35 HEK-293T C177(0.93)  LDD1628  [9]
 LDCM0425  CL36 HEK-293T C177(1.03)  LDD1629  [9]
 LDCM0426  CL37 HEK-293T C177(0.87)  LDD1630  [9]
 LDCM0428  CL39 HEK-293T C177(1.12)  LDD1632  [9]
 LDCM0429  CL4 HEK-293T C177(0.98)  LDD1633  [9]
 LDCM0430  CL40 HEK-293T C177(1.01)  LDD1634  [9]
 LDCM0431  CL41 HEK-293T C177(0.99)  LDD1635  [9]
 LDCM0432  CL42 HEK-293T C177(0.88)  LDD1636  [9]
 LDCM0433  CL43 HEK-293T C177(0.87)  LDD1637  [9]
 LDCM0434  CL44 HEK-293T C177(1.17)  LDD1638  [9]
 LDCM0435  CL45 HEK-293T C177(0.85)  LDD1639  [9]
 LDCM0436  CL46 HEK-293T C177(1.21)  LDD1640  [9]
 LDCM0437  CL47 HEK-293T C177(1.11)  LDD1641  [9]
 LDCM0438  CL48 HEK-293T C177(0.97)  LDD1642  [9]
 LDCM0439  CL49 HEK-293T C177(0.93)  LDD1643  [9]
 LDCM0440  CL5 HEK-293T C177(0.95)  LDD1644  [9]
 LDCM0441  CL50 HEK-293T C177(0.98)  LDD1645  [9]
 LDCM0443  CL52 HEK-293T C177(0.95)  LDD1646  [9]
 LDCM0444  CL53 HEK-293T C177(0.97)  LDD1647  [9]
 LDCM0445  CL54 HEK-293T C177(0.80)  LDD1648  [9]
 LDCM0446  CL55 HEK-293T C177(0.82)  LDD1649  [9]
 LDCM0447  CL56 HEK-293T C177(1.05)  LDD1650  [9]
 LDCM0448  CL57 HEK-293T C177(1.36)  LDD1651  [9]
 LDCM0449  CL58 HEK-293T C177(0.91)  LDD1652  [9]
 LDCM0450  CL59 HEK-293T C177(1.14)  LDD1653  [9]
 LDCM0451  CL6 HEK-293T C177(0.81)  LDD1654  [9]
 LDCM0452  CL60 HEK-293T C177(1.06)  LDD1655  [9]
 LDCM0453  CL61 HEK-293T C177(0.87)  LDD1656  [9]
 LDCM0454  CL62 HEK-293T C177(1.09)  LDD1657  [9]
 LDCM0455  CL63 HEK-293T C177(1.36)  LDD1658  [9]
 LDCM0456  CL64 HEK-293T C177(0.90)  LDD1659  [9]
 LDCM0457  CL65 HEK-293T C177(0.97)  LDD1660  [9]
 LDCM0458  CL66 HEK-293T C177(0.93)  LDD1661  [9]
 LDCM0459  CL67 HEK-293T C177(0.90)  LDD1662  [9]
 LDCM0460  CL68 HEK-293T C177(0.93)  LDD1663  [9]
 LDCM0461  CL69 HEK-293T C177(1.26)  LDD1664  [9]
 LDCM0462  CL7 HEK-293T C177(1.01)  LDD1665  [9]
 LDCM0463  CL70 HEK-293T C177(1.00)  LDD1666  [9]
 LDCM0464  CL71 HEK-293T C177(1.04)  LDD1667  [9]
 LDCM0465  CL72 HEK-293T C177(1.13)  LDD1668  [9]
 LDCM0466  CL73 HEK-293T C177(1.07)  LDD1669  [9]
 LDCM0467  CL74 HEK-293T C177(1.06)  LDD1670  [9]
 LDCM0469  CL76 HEK-293T C177(0.96)  LDD1672  [9]
 LDCM0470  CL77 HEK-293T C177(0.93)  LDD1673  [9]
 LDCM0471  CL78 HEK-293T C177(0.82)  LDD1674  [9]
 LDCM0472  CL79 HEK-293T C177(1.04)  LDD1675  [9]
 LDCM0473  CL8 HEK-293T C177(0.93)  LDD1676  [9]
 LDCM0474  CL80 HEK-293T C177(1.05)  LDD1677  [9]
 LDCM0475  CL81 HEK-293T C177(1.00)  LDD1678  [9]
 LDCM0476  CL82 HEK-293T C177(0.98)  LDD1679  [9]
 LDCM0477  CL83 HEK-293T C177(0.97)  LDD1680  [9]
 LDCM0478  CL84 HEK-293T C177(1.02)  LDD1681  [9]
 LDCM0479  CL85 HEK-293T C177(1.24)  LDD1682  [9]
 LDCM0480  CL86 HEK-293T C177(0.93)  LDD1683  [9]
 LDCM0481  CL87 HEK-293T C177(1.43)  LDD1684  [9]
 LDCM0482  CL88 HEK-293T C177(0.92)  LDD1685  [9]
 LDCM0483  CL89 HEK-293T C177(0.96)  LDD1686  [9]
 LDCM0484  CL9 HEK-293T C177(0.96)  LDD1687  [9]
 LDCM0485  CL90 HEK-293T C177(0.93)  LDD1688  [9]
 LDCM0486  CL91 HEK-293T C177(0.95)  LDD1689  [9]
 LDCM0487  CL92 HEK-293T C177(0.48)  LDD1690  [9]
 LDCM0488  CL93 HEK-293T C177(1.08)  LDD1691  [9]
 LDCM0489  CL94 HEK-293T C177(1.07)  LDD1692  [9]
 LDCM0490  CL95 HEK-293T C177(1.06)  LDD1693  [9]
 LDCM0491  CL96 HEK-293T C177(0.91)  LDD1694  [9]
 LDCM0492  CL97 HEK-293T C177(0.49)  LDD1695  [9]
 LDCM0493  CL98 HEK-293T C177(1.10)  LDD1696  [9]
 LDCM0494  CL99 HEK-293T C177(1.12)  LDD1697  [9]
 LDCM0495  E2913 HEK-293T C177(1.18)  LDD1698  [9]
 LDCM0468  Fragment33 HEK-293T C177(1.04)  LDD1671  [9]
 LDCM0427  Fragment51 HEK-293T C177(1.04)  LDD1631  [9]
 LDCM0022  KB02 HEK-293T C177(1.14)  LDD1492  [9]
 LDCM0023  KB03 HEK-293T C177(1.00)  LDD1497  [9]
 LDCM0024  KB05 OCUM-1 C75(2.48)  LDD3374  [2]
 LDCM0109  NEM HeLa N.A.  LDD0227  [5]
 LDCM0014  Panhematin K562 3.45  LDD0063  [4]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Kallikrein-6 (KLK6) Peptidase S1 family Q92876
Transporter and channel
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Huntingtin (HTT) Huntingtin family P42858
Alpha-crystallin A chain (CRYAA) Small heat shock protein (HSP20) family P02489
Transcription factor
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
High mobility group protein 20A (HMG20A) . Q9NP66
Other
Click To Hide/Show 12 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Apoptosis-stimulating of p53 protein 1 (PPP1R13B) ASPP family Q96KQ4
Keratin, type I cuticular Ha8 (KRT38) Intermediate filament family O76015
Keratin, type I cytoskeletal 15 (KRT15) Intermediate filament family P19012
Harmonin-binding protein USHBP1 (USHBP1) MCC family Q8N6Y0
Synaptonemal complex central element protein 1 (SYCE1) SYCE family Q8N0S2
Tuftelin-interacting protein 11 (TFIP11) TFP11/STIP family Q9UBB9
Breast cancer type 2 susceptibility protein (BRCA2) . P51587
Coiled-coil domain-containing protein 102B (CCDC102B) . Q68D86
Endoplasmic reticulum resident protein 29 (ERP29) . P30040
Nuclear transport factor 2 (NUTF2) . P61970
Sprouty-related, EVH1 domain-containing protein 1 (SPRED1) . Q7Z699
Uncharacterized protein C14orf119 (C14orf119) . Q9NWQ9

References

1 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
2 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
3 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
4 A Chemical Proteomic Map of Heme-Protein Interactions. J Am Chem Soc. 2022 Aug 24;144(33):15013-15019. doi: 10.1021/jacs.2c06104. Epub 2022 Aug 12.
Mass spectrometry data entry: PXD034651
5 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
6 Sequence-Based Prediction of Cysteine Reactivity Using Machine Learning. Biochemistry. 2018 Jan 30;57(4):451-460. doi: 10.1021/acs.biochem.7b00897. Epub 2017 Oct 26.
7 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
8 Ynamide Electrophile for the Profiling of Ligandable Carboxyl Residues in Live Cells and the Development of New Covalent Inhibitors. J Med Chem. 2022 Aug 11;65(15):10408-10418. doi: 10.1021/acs.jmedchem.2c00272. Epub 2022 Jul 26.
9 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402