General Information of Target

Target ID LDTP00660
Target Name Circadian locomoter output cycles protein kaput (CLOCK)
Gene Name CLOCK
Gene ID 9575
Synonyms
BHLHE8; KIAA0334; Circadian locomoter output cycles protein kaput; hCLOCK; EC 2.3.1.48; Class E basic helix-loop-helix protein 8; bHLHe8
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MLFTVSCSKMSSIVDRDDSSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSM
LPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKPTFLSNEEFTQLMLEALDG
FFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSL
TPEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVKFIGNFKSLNSVSSSAHNGFEGTIQRT
HRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYL
PFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYH
QWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRINTVSLKEA
LERFDHSPTPSASSRSSRKSSHTAVSDPSSTPTKIPTDTSTPPRQHLPAHEKMVQRRSSF
SSQSINSQSVGSSLTQPVMSQATNLPIPQGMSQFQFSAQLGAMQHLKDQLEQRTRMIEAN
IHRQQEELRKIQEQLQMVHGQGLQMFLQQSNPGLNFGSVQLSSGNSSNIQQLAPINMQGQ
VVPTNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQNVLSGHSQQTSLPSQTQSTLTAP
LYNTMVISQPAAGSMVQIPSSMPQNSTQSAAVTTFTQDRQIRFSQGQQLVTKLVTAPVAC
GAVMVPSTMLMGQVVTAYPTFATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQ
PPQQFLQTSRLLHGNPSTQLILSAAFPLQQSTFPQSHHQQHQSQQQQQLSRHRTDSLPDP
SKVQPQ
Target Bioclass
Enzyme
Subcellular location
Nucleus
Function
Transcriptional activator which forms a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in gene expression, which are translated into rhythms in metabolism and behavior. It is derived from the Latin roots 'circa' (about) and 'diem' (day) and acts as an important regulator of a wide array of physiological functions including metabolism, sleep, body temperature, blood pressure, endocrine, immune, cardiovascular, and renal function. Consists of two major components: the central clock, residing in the suprachiasmatic nucleus (SCN) of the brain, and the peripheral clocks that are present in nearly every tissue and organ system. Both the central and peripheral clocks can be reset by environmental cues, also known as Zeitgebers (German for 'timegivers'). The predominant Zeitgeber for the central clock is light, which is sensed by retina and signals directly to the SCN. The central clock entrains the peripheral clocks through neuronal and hormonal signals, body temperature and feeding-related cues, aligning all clocks with the external light/dark cycle. Circadian rhythms allow an organism to achieve temporal homeostasis with its environment at the molecular level by regulating gene expression to create a peak of protein expression once every 24 hours to control when a particular physiological process is most active with respect to the solar day. Transcription and translation of core clock components (CLOCK, NPAS2, BMAL1, BMAL2, PER1, PER2, PER3, CRY1 and CRY2) plays a critical role in rhythm generation, whereas delays imposed by post-translational modifications (PTMs) are important for determining the period (tau) of the rhythms (tau refers to the period of a rhythm and is the length, in time, of one complete cycle). A diurnal rhythm is synchronized with the day/night cycle, while the ultradian and infradian rhythms have a period shorter and longer than 24 hours, respectively. Disruptions in the circadian rhythms contribute to the pathology of cardiovascular diseases, cancer, metabolic syndromes and aging. A transcription/translation feedback loop (TTFL) forms the core of the molecular circadian clock mechanism. Transcription factors, CLOCK or NPAS2 and BMAL1 or BMAL2, form the positive limb of the feedback loop, act in the form of a heterodimer and activate the transcription of core clock genes and clock-controlled genes (involved in key metabolic processes), harboring E-box elements (5'-CACGTG-3') within their promoters. The core clock genes: PER1/2/3 and CRY1/2 which are transcriptional repressors form the negative limb of the feedback loop and interact with the CLOCK|NPAS2-BMAL1|BMAL2 heterodimer inhibiting its activity and thereby negatively regulating their own expression. This heterodimer also activates nuclear receptors NR1D1/2 and RORA/B/G, which form a second feedback loop and which activate and repress BMAL1 transcription, respectively. Regulates the circadian expression of ICAM1, VCAM1, CCL2, THPO and MPL and also acts as an enhancer of the transactivation potential of NF-kappaB. Plays an important role in the homeostatic regulation of sleep. The CLOCK-BMAL1 heterodimer regulates the circadian expression of SERPINE1/PAI1, VWF, B3, CCRN4L/NOC, NAMPT, DBP, MYOD1, PPARGC1A, PPARGC1B, SIRT1, GYS2, F7, NGFR, GNRHR, BHLHE40/DEC1, ATF4, MTA1, KLF10 and also genes implicated in glucose and lipid metabolism. Promotes rhythmic chromatin opening, regulating the DNA accessibility of other transcription factors. The CLOCK-BMAL2 heterodimer activates the transcription of SERPINE1/PAI1 and BHLHE40/DEC1. The preferred binding motif for the CLOCK-BMAL1 heterodimer is 5'-CACGTGA-3', which contains a flanking adenine nucleotide at the 3-prime end of the canonical 6-nucleotide E-box sequence. CLOCK specifically binds to the half-site 5'-CAC-3', while BMAL1 binds to the half-site 5'-GTGA-3'. The CLOCK-BMAL1 heterodimer also recognizes the non-canonical E-box motifs 5'-AACGTGA-3' and 5'-CATGTGA-3'. CLOCK has an intrinsic acetyltransferase activity, which enables circadian chromatin remodeling by acetylating histones and nonhistone proteins, including its own partner BMAL1. Represses glucocorticoid receptor NR3C1/GR-induced transcriptional activity by reducing the association of NR3C1/GR to glucocorticoid response elements (GREs) via the acetylation of multiple lysine residues located in its hinge region. The acetyltransferase activity of CLOCK is as important as its transcription activity in circadian control. Acetylates metabolic enzymes IMPDH2 and NDUFA9 in a circadian manner. Facilitated by BMAL1, rhythmically interacts and acetylates argininosuccinate synthase 1 (ASS1) leading to enzymatic inhibition of ASS1 as well as the circadian oscillation of arginine biosynthesis and subsequent ureagenesis. Drives the circadian rhythm of blood pressure through transcriptional activation of ATP1B1.
Uniprot ID
O15516
Ensemble ID
ENST00000309964.8
HGNC ID
HGNC:2082

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 4 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
IA-alkyne
 Probe Info 
C324(2.05)  LDD0371  [1]
IPM
 Probe Info 
C324(0.93)  LDD1702  [2]
DBIA
 Probe Info 
C250(1.56)  LDD0532  [3]
TFBX
 Probe Info 
N.A.  LDD0148  [4]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0025  4SU-RNA HEK-293T C324(2.05)  LDD0371  [1]
 LDCM0026  4SU-RNA+native RNA HEK-293T C324(2.50)  LDD0372  [1]
 LDCM0215  AC10 HCT 116 C250(1.56)  LDD0532  [3]
 LDCM0226  AC11 HCT 116 C250(1.15)  LDD0543  [3]
 LDCM0230  AC113 HCT 116 C250(1.12)  LDD0547  [3]
 LDCM0231  AC114 HCT 116 C250(1.37)  LDD0548  [3]
 LDCM0232  AC115 HCT 116 C250(0.99)  LDD0549  [3]
 LDCM0233  AC116 HCT 116 C250(1.03)  LDD0550  [3]
 LDCM0234  AC117 HCT 116 C250(1.24)  LDD0551  [3]
 LDCM0235  AC118 HCT 116 C250(1.09)  LDD0552  [3]
 LDCM0236  AC119 HCT 116 C250(1.16)  LDD0553  [3]
 LDCM0237  AC12 HCT 116 C250(1.17)  LDD0554  [3]
 LDCM0238  AC120 HCT 116 C250(1.33)  LDD0555  [3]
 LDCM0239  AC121 HCT 116 C250(0.92)  LDD0556  [3]
 LDCM0240  AC122 HCT 116 C250(1.37)  LDD0557  [3]
 LDCM0241  AC123 HCT 116 C250(1.10)  LDD0558  [3]
 LDCM0242  AC124 HCT 116 C250(1.11)  LDD0559  [3]
 LDCM0243  AC125 HCT 116 C250(1.22)  LDD0560  [3]
 LDCM0244  AC126 HCT 116 C250(1.43)  LDD0561  [3]
 LDCM0245  AC127 HCT 116 C250(1.38)  LDD0562  [3]
 LDCM0259  AC14 HCT 116 C250(1.01)  LDD0576  [3]
 LDCM0270  AC15 HCT 116 C250(0.82)  LDD0587  [3]
 LDCM0323  AC6 HCT 116 C250(1.10)  LDD0640  [3]
 LDCM0334  AC7 HCT 116 C250(1.14)  LDD0651  [3]
 LDCM0345  AC8 HCT 116 C250(1.08)  LDD0662  [3]
 LDCM0248  AKOS034007472 HCT 116 C250(1.16)  LDD0565  [3]
 LDCM0356  AKOS034007680 HCT 116 C250(1.33)  LDD0673  [3]
 LDCM0275  AKOS034007705 HCT 116 C250(0.97)  LDD0592  [3]
 LDCM0370  CL101 HCT 116 C250(1.15)  LDD0687  [3]
 LDCM0371  CL102 HCT 116 C250(1.09)  LDD0688  [3]
 LDCM0372  CL103 HCT 116 C250(1.08)  LDD0689  [3]
 LDCM0373  CL104 HCT 116 C250(1.09)  LDD0690  [3]
 LDCM0375  CL106 HEK-293T C324(1.10)  LDD1579  [5]
 LDCM0380  CL110 HEK-293T C324(1.04)  LDD1584  [5]
 LDCM0384  CL114 HEK-293T C324(0.88)  LDD1588  [5]
 LDCM0388  CL118 HEK-293T C324(1.02)  LDD1592  [5]
 LDCM0393  CL122 HEK-293T C324(1.07)  LDD1597  [5]
 LDCM0397  CL126 HEK-293T C324(0.92)  LDD1601  [5]
 LDCM0401  CL14 HEK-293T C324(1.09)  LDD1605  [5]
 LDCM0407  CL2 HEK-293T C324(1.00)  LDD1611  [5]
 LDCM0414  CL26 HEK-293T C324(0.92)  LDD1618  [5]
 LDCM0420  CL31 HCT 116 C250(0.93)  LDD0737  [3]
 LDCM0421  CL32 HCT 116 C250(1.09)  LDD0738  [3]
 LDCM0422  CL33 HCT 116 C250(1.07)  LDD0739  [3]
 LDCM0423  CL34 HCT 116 C250(1.47)  LDD0740  [3]
 LDCM0424  CL35 HCT 116 C250(1.05)  LDD0741  [3]
 LDCM0425  CL36 HCT 116 C250(1.27)  LDD0742  [3]
 LDCM0426  CL37 HCT 116 C250(0.83)  LDD0743  [3]
 LDCM0428  CL39 HCT 116 C250(1.18)  LDD0745  [3]
 LDCM0430  CL40 HCT 116 C250(1.02)  LDD0747  [3]
 LDCM0431  CL41 HCT 116 C250(0.77)  LDD0748  [3]
 LDCM0432  CL42 HCT 116 C250(0.89)  LDD0749  [3]
 LDCM0433  CL43 HCT 116 C250(1.16)  LDD0750  [3]
 LDCM0434  CL44 HCT 116 C250(1.16)  LDD0751  [3]
 LDCM0435  CL45 HCT 116 C250(1.40)  LDD0752  [3]
 LDCM0436  CL46 HCT 116 C250(1.03)  LDD0753  [3]
 LDCM0437  CL47 HCT 116 C250(0.79)  LDD0754  [3]
 LDCM0438  CL48 HCT 116 C250(1.02)  LDD0755  [3]
 LDCM0439  CL49 HCT 116 C250(1.03)  LDD0756  [3]
 LDCM0441  CL50 HCT 116 C250(1.12)  LDD0758  [3]
 LDCM0442  CL51 HCT 116 C250(0.83)  LDD0759  [3]
 LDCM0443  CL52 HCT 116 C250(0.93)  LDD0760  [3]
 LDCM0444  CL53 HCT 116 C250(0.93)  LDD0761  [3]
 LDCM0445  CL54 HCT 116 C250(0.76)  LDD0762  [3]
 LDCM0446  CL55 HCT 116 C250(0.81)  LDD0763  [3]
 LDCM0447  CL56 HCT 116 C250(0.94)  LDD0764  [3]
 LDCM0448  CL57 HCT 116 C250(0.89)  LDD0765  [3]
 LDCM0449  CL58 HCT 116 C250(0.99)  LDD0766  [3]
 LDCM0450  CL59 HCT 116 C250(0.82)  LDD0767  [3]
 LDCM0452  CL60 HCT 116 C250(1.03)  LDD0769  [3]
 LDCM0454  CL62 HEK-293T C324(0.90)  LDD1657  [5]
 LDCM0467  CL74 HEK-293T C324(1.14)  LDD1670  [5]
 LDCM0480  CL86 HEK-293T C324(0.96)  LDD1683  [5]
 LDCM0493  CL98 HEK-293T C324(1.05)  LDD1696  [5]
 LDCM0213  Electrophilic fragment 2 MDA-MB-231 C324(0.93)  LDD1702  [2]
 LDCM0427  Fragment51 HCT 116 C250(0.92)  LDD0744  [3]
 LDCM0022  KB02 BxPC-3 C250(1.07)  LDD2280  [6]
 LDCM0023  KB03 BxPC-3 C250(1.37)  LDD2697  [6]
 LDCM0024  KB05 NCI-H1299 C250(1.99)  LDD3343  [6]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Transcription factor
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Basic helix-loop-helix ARNT-like protein 1 (BMAL1) . O00327

References

1 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
2 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
3 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
4 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
5 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
6 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840