General Information of Target

Target ID LDTP12162
Target Name RNA polymerase II elongation factor ELL3 (ELL3)
Gene Name ELL3
Gene ID 80237
Synonyms
RNA polymerase II elongation factor ELL3
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Sequence
MGSCARLLLLWGCTVVAAGLSGVAGVSSRCEKACNPRMGNLALGRKLWADTTCGQNATEL
YCFYSENTDLTCRQPKCDKCNAAYPHLAHLPSAMADSSFRFPRTWWQSAEDVHREKIQLD
LEAEFYFTHLIVMFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKKGAI
CTSKYSSPFPCTGGEVIFKALSPPYDTENPYSAKVQEQLKITNLRVQLLKRQSCPCQRND
LNEEPQHFTHYAIYDFIVKGSCFCNGHADQCIPVHGFRPVKAPGTFHMVHGKCMCKHNTA
GSHCQHCAPLYNDRPWEAADGKTGAPNECRTCKCNGHADTCHFDVNVWEASGNRSGGVCD
DCQHNTEGQYCQRCKPGFYRDLRRPFSAPDACKPCSCHPVGSAVLPANSVTFCDPSNGDC
PCKPGVAGRRCDRCMVGYWGFGDYGCRPCDCAGSCDPITGDCISSHTDIDWYHEVPDFRP
VHNKSEPAWEWEDAQGFSALLHSGKCECKEQTLGNAKAFCGMKYSYVLKIKILSAHDKGT
HVEVNVKIKKVLKSTKLKIFRGKRTLYPESWTDRGCTCPILNPGLEYLVAGHEDIRTGKL
IVNMKSFVQHWKPSLGRKVMDILKRECK
Target Bioclass
Other
Family
ELL/occludin family
Subcellular location
Nucleus
Function
Enhancer-binding elongation factor that specifically binds enhancers in embryonic stem cells (ES cells), marks them, and is required for their future activation during stem cell specification. Does not only bind to enhancer regions of active genes, but also marks the enhancers that are in a poised or inactive state in ES cells and is required for establishing proper RNA polymerase II occupancy at developmentally regulated genes in a cohesin-dependent manner. Probably required for priming developmentally regulated genes for later recruitment of the super elongation complex (SEC), for transcriptional activation during differentiation. Required for recruitment of P-TEFb within SEC during differentiation. Probably preloaded on germ cell chromatin, suggesting that it may prime gene activation by marking enhancers as early as in the germ cells. Promoting epithelial-mesenchymal transition (EMT). Elongation factor component of the super elongation complex (SEC), a complex required to increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA. Component of the little elongation complex (LEC), a complex required to regulate small nuclear RNA (snRNA) gene transcription by RNA polymerase II and III.
Uniprot ID
Q9HB65
Ensemble ID
ENST00000319359.8
HGNC ID
HGNC:23113

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
JURKAT SNV: p.R337T .
KASUMI2 SNV: p.L14F .
LS123 SNV: p.T22I .
MFE319 SNV: p.R107G; p.R339L .
MOLT4 SNV: p.R91H .
NCIH1155 SNV: p.L29F .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 2 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
IA-alkyne
 Probe Info 
C15(1.58)  LDD2182  [1]
DBIA
 Probe Info 
C15(1.25)  LDD0593  [2]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HEK-293T C15(0.94)  LDD1507  [3]
 LDCM0215  AC10 HEK-293T C15(1.07)  LDD1508  [3]
 LDCM0226  AC11 HEK-293T C15(1.09)  LDD1509  [3]
 LDCM0237  AC12 HEK-293T C15(0.98)  LDD1510  [3]
 LDCM0276  AC17 HCT 116 C15(1.25)  LDD0593  [2]
 LDCM0277  AC18 HCT 116 C15(1.09)  LDD0594  [2]
 LDCM0278  AC19 HCT 116 C15(1.05)  LDD0595  [2]
 LDCM0279  AC2 HEK-293T C15(0.99)  LDD1518  [3]
 LDCM0280  AC20 HCT 116 C15(1.10)  LDD0597  [2]
 LDCM0281  AC21 HCT 116 C15(0.90)  LDD0598  [2]
 LDCM0282  AC22 HCT 116 C15(0.97)  LDD0599  [2]
 LDCM0283  AC23 HCT 116 C15(0.88)  LDD0600  [2]
 LDCM0284  AC24 HCT 116 C15(1.17)  LDD0601  [2]
 LDCM0285  AC25 HEK-293T C15(0.91)  LDD1524  [3]
 LDCM0286  AC26 HEK-293T C15(1.14)  LDD1525  [3]
 LDCM0287  AC27 HEK-293T C15(0.86)  LDD1526  [3]
 LDCM0288  AC28 HEK-293T C15(1.02)  LDD1527  [3]
 LDCM0289  AC29 HEK-293T C15(1.53)  LDD1528  [3]
 LDCM0290  AC3 HEK-293T C15(0.98)  LDD1529  [3]
 LDCM0294  AC33 HEK-293T C15(1.26)  LDD1533  [3]
 LDCM0295  AC34 HEK-293T C15(0.98)  LDD1534  [3]
 LDCM0296  AC35 HEK-293T C15(1.04)  LDD1535  [3]
 LDCM0297  AC36 HEK-293T C15(0.88)  LDD1536  [3]
 LDCM0298  AC37 HEK-293T C15(1.43)  LDD1537  [3]
 LDCM0301  AC4 HEK-293T C15(0.99)  LDD1540  [3]
 LDCM0303  AC41 HEK-293T C15(0.96)  LDD1542  [3]
 LDCM0304  AC42 HEK-293T C15(1.18)  LDD1543  [3]
 LDCM0305  AC43 HEK-293T C15(1.05)  LDD1544  [3]
 LDCM0306  AC44 HEK-293T C15(0.98)  LDD1545  [3]
 LDCM0307  AC45 HEK-293T C15(1.50)  LDD1546  [3]
 LDCM0311  AC49 HEK-293T C15(1.10)  LDD1550  [3]
 LDCM0312  AC5 HEK-293T C15(1.44)  LDD1551  [3]
 LDCM0313  AC50 HEK-293T C15(1.05)  LDD1552  [3]
 LDCM0314  AC51 HEK-293T C15(0.78)  LDD1553  [3]
 LDCM0315  AC52 HEK-293T C15(1.20)  LDD1554  [3]
 LDCM0316  AC53 HEK-293T C15(1.13)  LDD1555  [3]
 LDCM0320  AC57 HEK-293T C15(1.20)  LDD1559  [3]
 LDCM0321  AC58 HEK-293T C15(1.02)  LDD1560  [3]
 LDCM0322  AC59 HEK-293T C15(0.97)  LDD1561  [3]
 LDCM0324  AC60 HEK-293T C15(1.03)  LDD1563  [3]
 LDCM0325  AC61 HEK-293T C15(1.59)  LDD1564  [3]
 LDCM0332  AC68 HCT 116 C15(1.11)  LDD0649  [2]
 LDCM0333  AC69 HCT 116 C15(0.86)  LDD0650  [2]
 LDCM0335  AC70 HCT 116 C15(1.10)  LDD0652  [2]
 LDCM0336  AC71 HCT 116 C15(0.89)  LDD0653  [2]
 LDCM0337  AC72 HCT 116 C15(1.22)  LDD0654  [2]
 LDCM0338  AC73 HCT 116 C15(0.89)  LDD0655  [2]
 LDCM0339  AC74 HCT 116 C15(0.92)  LDD0656  [2]
 LDCM0340  AC75 HCT 116 C15(0.93)  LDD0657  [2]
 LDCM0341  AC76 HCT 116 C15(0.98)  LDD0658  [2]
 LDCM0342  AC77 HCT 116 C15(0.91)  LDD0659  [2]
 LDCM0343  AC78 HCT 116 C15(1.08)  LDD0660  [2]
 LDCM0344  AC79 HCT 116 C15(1.02)  LDD0661  [2]
 LDCM0346  AC80 HCT 116 C15(1.07)  LDD0663  [2]
 LDCM0347  AC81 HCT 116 C15(0.99)  LDD0664  [2]
 LDCM0348  AC82 HCT 116 C15(1.13)  LDD0665  [2]
 LDCM0248  AKOS034007472 HEK-293T C15(1.15)  LDD1511  [3]
 LDCM0356  AKOS034007680 HEK-293T C15(1.25)  LDD1570  [3]
 LDCM0369  CL100 HEK-293T C15(1.00)  LDD1573  [3]
 LDCM0372  CL103 HEK-293T C15(0.88)  LDD1576  [3]
 LDCM0373  CL104 HEK-293T C15(1.08)  LDD1577  [3]
 LDCM0374  CL105 HCT 116 C15(1.43)  LDD0691  [2]
 LDCM0375  CL106 HCT 116 C15(1.11)  LDD0692  [2]
 LDCM0376  CL107 HCT 116 C15(1.15)  LDD0693  [2]
 LDCM0377  CL108 HCT 116 C15(1.27)  LDD0694  [2]
 LDCM0378  CL109 HCT 116 C15(1.07)  LDD0695  [2]
 LDCM0380  CL110 HCT 116 C15(1.17)  LDD0697  [2]
 LDCM0381  CL111 HCT 116 C15(1.09)  LDD0698  [2]
 LDCM0382  CL112 HEK-293T C15(0.81)  LDD1586  [3]
 LDCM0385  CL115 HEK-293T C15(1.00)  LDD1589  [3]
 LDCM0386  CL116 HEK-293T C15(1.02)  LDD1590  [3]
 LDCM0389  CL119 HEK-293T C15(1.06)  LDD1593  [3]
 LDCM0391  CL120 HEK-293T C15(0.93)  LDD1595  [3]
 LDCM0394  CL123 HEK-293T C15(0.75)  LDD1598  [3]
 LDCM0395  CL124 HEK-293T C15(0.89)  LDD1599  [3]
 LDCM0398  CL127 HEK-293T C15(1.12)  LDD1602  [3]
 LDCM0399  CL128 HEK-293T C15(0.90)  LDD1603  [3]
 LDCM0402  CL15 HEK-293T C15(0.96)  LDD1606  [3]
 LDCM0403  CL16 HCT 116 C15(1.13)  LDD0720  [2]
 LDCM0404  CL17 HEK-293T C15(0.96)  LDD1608  [3]
 LDCM0405  CL18 HEK-293T C15(1.09)  LDD1609  [3]
 LDCM0406  CL19 HEK-293T C15(0.99)  LDD1610  [3]
 LDCM0408  CL20 HEK-293T C15(1.03)  LDD1612  [3]
 LDCM0409  CL21 HEK-293T C15(1.17)  LDD1613  [3]
 LDCM0415  CL27 HEK-293T C15(1.10)  LDD1619  [3]
 LDCM0416  CL28 HEK-293T C15(1.01)  LDD1620  [3]
 LDCM0417  CL29 HEK-293T C15(0.90)  LDD1621  [3]
 LDCM0418  CL3 HEK-293T C15(1.29)  LDD1622  [3]
 LDCM0419  CL30 HEK-293T C15(1.03)  LDD1623  [3]
 LDCM0420  CL31 HEK-293T C15(1.25)  LDD1624  [3]
 LDCM0421  CL32 HCT 116 C15(1.35)  LDD0738  [2]
 LDCM0422  CL33 HCT 116 C15(0.81)  LDD0739  [2]
 LDCM0423  CL34 HCT 116 C15(0.95)  LDD0740  [2]
 LDCM0424  CL35 HCT 116 C15(1.50)  LDD0741  [2]
 LDCM0425  CL36 HCT 116 C15(1.01)  LDD0742  [2]
 LDCM0426  CL37 HCT 116 C15(0.90)  LDD0743  [2]
 LDCM0428  CL39 HCT 116 C15(0.96)  LDD0745  [2]
 LDCM0429  CL4 HEK-293T C15(0.98)  LDD1633  [3]
 LDCM0430  CL40 HCT 116 C15(0.84)  LDD0747  [2]
 LDCM0431  CL41 HCT 116 C15(0.79)  LDD0748  [2]
 LDCM0432  CL42 HCT 116 C15(0.79)  LDD0749  [2]
 LDCM0433  CL43 HCT 116 C15(0.82)  LDD0750  [2]
 LDCM0434  CL44 HCT 116 C15(1.58)  LDD0751  [2]
 LDCM0435  CL45 HCT 116 C15(1.26)  LDD0752  [2]
 LDCM0440  CL5 HEK-293T C15(1.06)  LDD1644  [3]
 LDCM0443  CL52 HEK-293T C15(0.98)  LDD1646  [3]
 LDCM0444  CL53 HEK-293T C15(1.15)  LDD1647  [3]
 LDCM0445  CL54 HEK-293T C15(0.91)  LDD1648  [3]
 LDCM0446  CL55 HEK-293T C15(1.07)  LDD1649  [3]
 LDCM0447  CL56 HEK-293T C15(0.96)  LDD1650  [3]
 LDCM0448  CL57 HEK-293T C15(1.20)  LDD1651  [3]
 LDCM0451  CL6 HEK-293T C15(1.06)  LDD1654  [3]
 LDCM0453  CL61 HCT 116 C15(1.13)  LDD0770  [2]
 LDCM0454  CL62 HCT 116 C15(1.10)  LDD0771  [2]
 LDCM0455  CL63 HCT 116 C15(2.04)  LDD0772  [2]
 LDCM0456  CL64 HCT 116 C15(2.99)  LDD0773  [2]
 LDCM0457  CL65 HCT 116 C15(2.67)  LDD0774  [2]
 LDCM0458  CL66 HCT 116 C15(2.49)  LDD0775  [2]
 LDCM0459  CL67 HCT 116 C15(2.49)  LDD0776  [2]
 LDCM0460  CL68 HCT 116 C15(2.52)  LDD0777  [2]
 LDCM0461  CL69 HCT 116 C15(3.67)  LDD0778  [2]
 LDCM0462  CL7 HEK-293T C15(1.14)  LDD1665  [3]
 LDCM0463  CL70 HCT 116 C15(1.37)  LDD0780  [2]
 LDCM0464  CL71 HCT 116 C15(2.19)  LDD0781  [2]
 LDCM0465  CL72 HCT 116 C15(3.06)  LDD0782  [2]
 LDCM0466  CL73 HCT 116 C15(2.37)  LDD0783  [2]
 LDCM0467  CL74 HCT 116 C15(2.92)  LDD0784  [2]
 LDCM0469  CL76 HEK-293T C15(1.20)  LDD1672  [3]
 LDCM0470  CL77 HEK-293T C15(1.01)  LDD1673  [3]
 LDCM0471  CL78 HEK-293T C15(1.20)  LDD1674  [3]
 LDCM0472  CL79 HEK-293T C15(1.54)  LDD1675  [3]
 LDCM0473  CL8 HEK-293T C15(0.83)  LDD1676  [3]
 LDCM0474  CL80 HEK-293T C15(1.01)  LDD1677  [3]
 LDCM0475  CL81 HEK-293T C15(1.37)  LDD1678  [3]
 LDCM0481  CL87 HEK-293T C15(1.13)  LDD1684  [3]
 LDCM0482  CL88 HEK-293T C15(0.88)  LDD1685  [3]
 LDCM0483  CL89 HEK-293T C15(1.04)  LDD1686  [3]
 LDCM0484  CL9 HEK-293T C15(1.33)  LDD1687  [3]
 LDCM0485  CL90 HEK-293T C15(0.77)  LDD1688  [3]
 LDCM0486  CL91 HEK-293T C15(1.44)  LDD1689  [3]
 LDCM0487  CL92 HEK-293T C15(0.97)  LDD1690  [3]
 LDCM0488  CL93 HEK-293T C15(1.21)  LDD1691  [3]
 LDCM0494  CL99 HEK-293T C15(1.17)  LDD1697  [3]
 LDCM0495  E2913 HEK-293T C15(0.97)  LDD1698  [3]
 LDCM0625  F8 Ramos C15(1.30)  LDD2187  [1]
 LDCM0572  Fragment10 Ramos C15(1.11)  LDD2189  [1]
 LDCM0573  Fragment11 Ramos C15(0.40)  LDD2190  [1]
 LDCM0574  Fragment12 Ramos C15(0.84)  LDD2191  [1]
 LDCM0575  Fragment13 Ramos C15(0.92)  LDD2192  [1]
 LDCM0576  Fragment14 Ramos C15(0.85)  LDD2193  [1]
 LDCM0579  Fragment20 Ramos C15(0.98)  LDD2194  [1]
 LDCM0580  Fragment21 Ramos C15(1.17)  LDD2195  [1]
 LDCM0582  Fragment23 Ramos C15(1.15)  LDD2196  [1]
 LDCM0578  Fragment27 Ramos C15(1.08)  LDD2197  [1]
 LDCM0586  Fragment28 Ramos C15(0.89)  LDD2198  [1]
 LDCM0588  Fragment30 Ramos C15(1.15)  LDD2199  [1]
 LDCM0589  Fragment31 Ramos C15(1.05)  LDD2200  [1]
 LDCM0590  Fragment32 Ramos C15(0.94)  LDD2201  [1]
 LDCM0468  Fragment33 HCT 116 C15(3.11)  LDD0785  [2]
 LDCM0596  Fragment38 Ramos C15(1.02)  LDD2203  [1]
 LDCM0566  Fragment4 Ramos C15(2.29)  LDD2184  [1]
 LDCM0427  Fragment51 HCT 116 C15(1.19)  LDD0744  [2]
 LDCM0610  Fragment52 Ramos C15(1.03)  LDD2204  [1]
 LDCM0614  Fragment56 Ramos C15(1.14)  LDD2205  [1]
 LDCM0569  Fragment7 Ramos C15(1.33)  LDD2186  [1]
 LDCM0571  Fragment9 Ramos C15(1.15)  LDD2188  [1]
 LDCM0022  KB02 Ramos C15(1.58)  LDD2182  [1]
 LDCM0023  KB03 Ramos C15(1.23)  LDD2183  [1]
 LDCM0024  KB05 NCI-N87 C15(3.91)  LDD3364  [4]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Other
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
ELL-associated factor 1 (EAF1) EAF family Q96JC9

References

1 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578
2 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
3 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
4 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840