Details of the Target

General Information of Target

Target ID LDTP12024
Target Name Tudor domain-containing protein 3 (TDRD3)
Gene Name TDRD3
Gene ID 81550
Synonyms
Tudor domain-containing protein 3
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MQANGAGGGGGGGGGGGGGGGGGGGQGQTPELACLSAQNGESSPSSSSSAGDLAHANGLL
PSAPSAASNNSNSLNVNNGVPGGAAAASSATVAAASATTAASSSLATPELGSSLKKKKRL
SQSDEDVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLN
ELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCEL
TPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRR
LQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWF
CKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACG
PDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLL
DSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRL
ALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHK
RSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMD
S
Target Bioclass
Other
Subcellular location
Cytoplasm
Function
Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. Plays a role in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, acts as an antiviral factor that participates in the assembly of stress granules together with G3BP1.
Uniprot ID
Q9H7E2
Ensemble ID
ENST00000196169.7
HGNC ID
HGNC:20612
ChEMBL ID
CHEMBL3879852

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 13 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info  		C98(2.72)  LDD3310  [1]
AHL-Pu-1
 Probe Info  		C521(2.75)  LDD0168  [2]
ATP probe
 Probe Info  		K473(0.00); K200(0.00)  LDD0199  [3]
IA-alkyne
 Probe Info  		N.A.  LDD0036  [4]
Lodoacetamide azide
 Probe Info  		N.A.  LDD0037  [4]
NAIA_4
 Probe Info  		N.A.  LDD2226  [5]
NAIA_5
 Probe Info  		N.A.  LDD2224  [5]
IPM
 Probe Info  		N.A.  LDD0005  [6]
NPM
 Probe Info  		N.A.  LDD0016  [6]
TFBX
 Probe Info  		N.A.  LDD0148  [7]
VSF
 Probe Info  		N.A.  LDD0007  [6]
Phosphinate-6
 Probe Info  		C377(0.00); C521(0.00); C98(0.00)  LDD0018  [8]
W1
 Probe Info  		N.A.  LDD0236  [9]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0025  4SU-RNA HEK-293T C521(2.75)  LDD0168  [2]
 LDCM0026  4SU-RNA+native RNA HEK-293T C521(3.08)  LDD0169  [2]
 LDCM0214  AC1 HEK-293T C98(1.05); C377(1.05)  LDD1507  [10]
 LDCM0215  AC10 HEK-293T C98(1.01)  LDD1508  [10]
 LDCM0226  AC11 HEK-293T C98(0.98); C521(1.11)  LDD1509  [10]
 LDCM0237  AC12 HEK-293T C98(0.94); C377(0.99); C521(1.24)  LDD1510  [10]
 LDCM0259  AC14 HEK-293T C98(1.06)  LDD1512  [10]
 LDCM0270  AC15 HEK-293T C98(0.99)  LDD1513  [10]
 LDCM0276  AC17 HEK-293T C98(1.08); C377(1.18)  LDD1515  [10]
 LDCM0277  AC18 HEK-293T C98(0.99)  LDD1516  [10]
 LDCM0278  AC19 HEK-293T C98(0.93); C521(0.98)  LDD1517  [10]
 LDCM0279  AC2 HEK-293T C98(0.97)  LDD1518  [10]
 LDCM0280  AC20 HEK-293T C98(0.82); C377(1.07); C521(1.15)  LDD1519  [10]
 LDCM0281  AC21 HEK-293T C98(0.93)  LDD1520  [10]
 LDCM0282  AC22 HEK-293T C98(0.99)  LDD1521  [10]
 LDCM0283  AC23 HEK-293T C98(0.95)  LDD1522  [10]
 LDCM0284  AC24 HEK-293T C98(1.01); C377(1.04); C521(0.92)  LDD1523  [10]
 LDCM0285  AC25 HEK-293T C98(1.03); C377(1.14)  LDD1524  [10]
 LDCM0286  AC26 HEK-293T C98(1.03)  LDD1525  [10]
 LDCM0287  AC27 HEK-293T C98(0.97); C521(1.02)  LDD1526  [10]
 LDCM0288  AC28 HEK-293T C98(0.92); C377(1.10); C521(1.07)  LDD1527  [10]
 LDCM0289  AC29 HEK-293T C98(0.97)  LDD1528  [10]
 LDCM0290  AC3 HEK-293T C98(0.95); C521(1.02)  LDD1529  [10]
 LDCM0291  AC30 HEK-293T C98(1.03)  LDD1530  [10]
 LDCM0292  AC31 HEK-293T C98(0.96)  LDD1531  [10]
 LDCM0293  AC32 HEK-293T C98(1.08); C377(1.08); C521(1.01)  LDD1532  [10]
 LDCM0294  AC33 HEK-293T C98(1.11); C377(1.05)  LDD1533  [10]
 LDCM0295  AC34 HEK-293T C98(1.02)  LDD1534  [10]
 LDCM0296  AC35 HEK-293T C98(0.95); C521(1.07)  LDD1535  [10]
 LDCM0297  AC36 HEK-293T C98(0.85); C377(1.05); C521(1.68)  LDD1536  [10]
 LDCM0298  AC37 HEK-293T C98(0.97)  LDD1537  [10]
 LDCM0299  AC38 HEK-293T C98(0.97)  LDD1538  [10]
 LDCM0300  AC39 HEK-293T C98(0.93)  LDD1539  [10]
 LDCM0301  AC4 HEK-293T C98(0.90); C377(0.96); C521(1.17)  LDD1540  [10]
 LDCM0302  AC40 HEK-293T C98(1.03); C377(1.06); C521(1.06)  LDD1541  [10]
 LDCM0303  AC41 HEK-293T C98(1.09); C377(1.23)  LDD1542  [10]
 LDCM0304  AC42 HEK-293T C98(1.06)  LDD1543  [10]
 LDCM0305  AC43 HEK-293T C98(0.98); C521(1.01)  LDD1544  [10]
 LDCM0306  AC44 HEK-293T C98(0.91); C377(1.03); C521(1.66)  LDD1545  [10]
 LDCM0307  AC45 HEK-293T C98(0.98)  LDD1546  [10]
 LDCM0308  AC46 HEK-293T C98(1.03)  LDD1547  [10]
 LDCM0309  AC47 HEK-293T C98(1.04)  LDD1548  [10]
 LDCM0310  AC48 HEK-293T C98(1.00); C377(1.15); C521(1.04)  LDD1549  [10]
 LDCM0311  AC49 HEK-293T C98(1.05); C377(1.29)  LDD1550  [10]
 LDCM0312  AC5 HEK-293T C98(0.98)  LDD1551  [10]
 LDCM0313  AC50 HEK-293T C98(1.05)  LDD1552  [10]
 LDCM0314  AC51 HEK-293T C98(0.92); C521(1.01)  LDD1553  [10]
 LDCM0315  AC52 HEK-293T C98(0.81); C377(1.17); C521(1.41)  LDD1554  [10]
 LDCM0316  AC53 HEK-293T C98(0.94)  LDD1555  [10]
 LDCM0317  AC54 HEK-293T C98(1.02)  LDD1556  [10]
 LDCM0318  AC55 HEK-293T C98(0.95)  LDD1557  [10]
 LDCM0319  AC56 HEK-293T C98(0.87); C377(1.12); C521(1.06)  LDD1558  [10]
 LDCM0320  AC57 HEK-293T C98(1.04); C377(1.07)  LDD1559  [10]
 LDCM0321  AC58 HEK-293T C98(0.99)  LDD1560  [10]
 LDCM0322  AC59 HEK-293T C98(0.94); C521(1.00)  LDD1561  [10]
 LDCM0323  AC6 HEK-293T C98(1.00)  LDD1562  [10]
 LDCM0324  AC60 HEK-293T C98(0.90); C377(1.02); C521(1.33)  LDD1563  [10]
 LDCM0325  AC61 HEK-293T C98(0.97)  LDD1564  [10]
 LDCM0326  AC62 HEK-293T C98(0.97)  LDD1565  [10]
 LDCM0327  AC63 HEK-293T C98(0.96)  LDD1566  [10]
 LDCM0328  AC64 HEK-293T C98(0.92); C377(1.09); C521(1.10)  LDD1567  [10]
 LDCM0334  AC7 HEK-293T C98(0.96)  LDD1568  [10]
 LDCM0345  AC8 HEK-293T C98(0.95); C377(1.06); C521(1.03)  LDD1569  [10]
 LDCM0248  AKOS034007472 HEK-293T C98(1.02)  LDD1511  [10]
 LDCM0356  AKOS034007680 HEK-293T C98(1.14); C377(1.16)  LDD1570  [10]
 LDCM0275  AKOS034007705 HEK-293T C98(0.98); C377(1.18); C521(1.03)  LDD1514  [10]
 LDCM0632  CL-Sc Hep-G2 C521(1.09); C98(0.84)  LDD2227  [5]
 LDCM0367  CL1 HEK-293T C98(0.95); C377(0.95)  LDD1571  [10]
 LDCM0368  CL10 HEK-293T C98(1.11)  LDD1572  [10]
 LDCM0370  CL101 HEK-293T C98(1.02); C377(1.13)  LDD1574  [10]
 LDCM0371  CL102 HEK-293T C98(1.04)  LDD1575  [10]
 LDCM0372  CL103 HEK-293T C98(0.94); C377(1.13)  LDD1576  [10]
 LDCM0374  CL105 HEK-293T C98(0.97); C377(1.08)  LDD1578  [10]
 LDCM0375  CL106 HEK-293T C98(0.95)  LDD1579  [10]
 LDCM0376  CL107 HEK-293T C98(0.98); C377(1.11)  LDD1580  [10]
 LDCM0378  CL109 HEK-293T C98(0.97); C377(1.02)  LDD1582  [10]
 LDCM0379  CL11 HEK-293T C98(0.89)  LDD1583  [10]
 LDCM0380  CL110 HEK-293T C98(1.00)  LDD1584  [10]
 LDCM0381  CL111 HEK-293T C98(0.99); C377(1.10)  LDD1585  [10]
 LDCM0383  CL113 HEK-293T C98(1.04); C377(0.96)  LDD1587  [10]
 LDCM0384  CL114 HEK-293T C98(0.97)  LDD1588  [10]
 LDCM0385  CL115 HEK-293T C98(1.05); C377(1.11)  LDD1589  [10]
 LDCM0387  CL117 HEK-293T C98(1.00); C377(1.06)  LDD1591  [10]
 LDCM0388  CL118 HEK-293T C98(1.07)  LDD1592  [10]
 LDCM0389  CL119 HEK-293T C98(0.99); C377(1.11)  LDD1593  [10]
 LDCM0390  CL12 HEK-293T C98(0.90); C377(0.94); C521(1.14)  LDD1594  [10]
 LDCM0392  CL121 HEK-293T C98(0.99); C377(1.14)  LDD1596  [10]
 LDCM0393  CL122 HEK-293T C98(0.99)  LDD1597  [10]
 LDCM0394  CL123 HEK-293T C98(0.99); C377(1.10)  LDD1598  [10]
 LDCM0396  CL125 HEK-293T C98(1.00); C377(0.99)  LDD1600  [10]
 LDCM0397  CL126 HEK-293T C98(0.98)  LDD1601  [10]
 LDCM0398  CL127 HEK-293T C98(0.96); C377(1.00)  LDD1602  [10]
 LDCM0400  CL13 HEK-293T C98(0.99); C377(1.18)  LDD1604  [10]
 LDCM0401  CL14 HEK-293T C98(1.02)  LDD1605  [10]
 LDCM0402  CL15 HEK-293T C98(0.89); C377(1.01)  LDD1606  [10]
 LDCM0404  CL17 HEK-293T C98(1.08); C377(1.04)  LDD1608  [10]
 LDCM0405  CL18 HEK-293T C98(1.12)  LDD1609  [10]
 LDCM0406  CL19 HEK-293T C98(0.92); C521(1.20)  LDD1610  [10]
 LDCM0407  CL2 HEK-293T C98(1.03)  LDD1611  [10]
 LDCM0408  CL20 HEK-293T C98(0.92); C377(1.11); C521(1.20)  LDD1612  [10]
 LDCM0409  CL21 HEK-293T C98(0.94)  LDD1613  [10]
 LDCM0410  CL22 HEK-293T C98(1.08)  LDD1614  [10]
 LDCM0411  CL23 HEK-293T C98(0.94)  LDD1615  [10]
 LDCM0412  CL24 HEK-293T C98(0.93); C377(1.02); C521(1.40)  LDD1616  [10]
 LDCM0413  CL25 HEK-293T C98(0.88); C377(0.87)  LDD1617  [10]
 LDCM0414  CL26 HEK-293T C98(1.01)  LDD1618  [10]
 LDCM0415  CL27 HEK-293T C98(0.97); C377(1.14)  LDD1619  [10]
 LDCM0417  CL29 HEK-293T C98(1.11); C377(1.09)  LDD1621  [10]
 LDCM0418  CL3 HEK-293T C98(0.94); C377(0.95)  LDD1622  [10]
 LDCM0419  CL30 HEK-293T C98(1.05)  LDD1623  [10]
 LDCM0420  CL31 HEK-293T C98(0.96); C521(1.12)  LDD1624  [10]
 LDCM0421  CL32 HEK-293T C98(1.00); C377(1.01); C521(1.38)  LDD1625  [10]
 LDCM0422  CL33 HEK-293T C98(1.00)  LDD1626  [10]
 LDCM0423  CL34 HEK-293T C98(1.12)  LDD1627  [10]
 LDCM0424  CL35 HEK-293T C98(0.96)  LDD1628  [10]
 LDCM0425  CL36 HEK-293T C98(0.92); C377(1.06); C521(1.02)  LDD1629  [10]
 LDCM0426  CL37 HEK-293T C98(0.92); C377(0.98)  LDD1630  [10]
 LDCM0428  CL39 HEK-293T C98(1.01); C377(1.14)  LDD1632  [10]
 LDCM0431  CL41 HEK-293T C98(1.00); C377(1.06)  LDD1635  [10]
 LDCM0432  CL42 HEK-293T C98(1.03)  LDD1636  [10]
 LDCM0433  CL43 HEK-293T C98(0.92); C521(1.10)  LDD1637  [10]
 LDCM0434  CL44 HEK-293T C98(0.89); C377(1.09); C521(1.28)  LDD1638  [10]
 LDCM0435  CL45 HEK-293T C98(1.01)  LDD1639  [10]
 LDCM0436  CL46 HEK-293T C98(1.11)  LDD1640  [10]
 LDCM0437  CL47 HEK-293T C98(1.00)  LDD1641  [10]
 LDCM0438  CL48 HEK-293T C98(0.90); C377(1.00); C521(1.16)  LDD1642  [10]
 LDCM0439  CL49 HEK-293T C98(0.97); C377(1.02)  LDD1643  [10]
 LDCM0440  CL5 HEK-293T C98(1.06); C377(1.00)  LDD1644  [10]
 LDCM0441  CL50 HEK-293T C98(1.02)  LDD1645  [10]
 LDCM0444  CL53 HEK-293T C98(1.15); C377(1.05)  LDD1647  [10]
 LDCM0445  CL54 HEK-293T C98(1.07)  LDD1648  [10]
 LDCM0446  CL55 HEK-293T C98(0.96); C521(1.04)  LDD1649  [10]
 LDCM0447  CL56 HEK-293T C98(0.90); C377(1.13); C521(1.49)  LDD1650  [10]
 LDCM0448  CL57 HEK-293T C98(1.01)  LDD1651  [10]
 LDCM0449  CL58 HEK-293T C98(1.23)  LDD1652  [10]
 LDCM0450  CL59 HEK-293T C98(0.94)  LDD1653  [10]
 LDCM0451  CL6 HEK-293T C98(1.02)  LDD1654  [10]
 LDCM0452  CL60 HEK-293T C98(0.91); C377(1.12); C521(1.24)  LDD1655  [10]
 LDCM0453  CL61 HEK-293T C98(0.97); C377(1.01)  LDD1656  [10]
 LDCM0454  CL62 HEK-293T C98(1.09)  LDD1657  [10]
 LDCM0455  CL63 HEK-293T C98(0.96); C377(1.10)  LDD1658  [10]
 LDCM0457  CL65 HEK-293T C98(1.15); C377(1.13)  LDD1660  [10]
 LDCM0458  CL66 HEK-293T C98(1.08)  LDD1661  [10]
 LDCM0459  CL67 HEK-293T C98(0.99); C521(0.99)  LDD1662  [10]
 LDCM0460  CL68 HEK-293T C98(0.91); C377(0.94); C521(1.56)  LDD1663  [10]
 LDCM0461  CL69 HEK-293T C98(1.08)  LDD1664  [10]
 LDCM0462  CL7 HEK-293T C98(0.88); C521(1.09)  LDD1665  [10]
 LDCM0463  CL70 HEK-293T C98(1.09)  LDD1666  [10]
 LDCM0464  CL71 HEK-293T C98(0.97)  LDD1667  [10]
 LDCM0465  CL72 HEK-293T C98(1.04); C377(1.09); C521(1.11)  LDD1668  [10]
 LDCM0466  CL73 HEK-293T C98(0.92); C377(1.02)  LDD1669  [10]
 LDCM0467  CL74 HEK-293T C98(1.00)  LDD1670  [10]
 LDCM0470  CL77 HEK-293T C98(1.03); C377(1.18)  LDD1673  [10]
 LDCM0471  CL78 HEK-293T C98(1.05)  LDD1674  [10]
 LDCM0472  CL79 HEK-293T C98(0.99); C521(1.07)  LDD1675  [10]
 LDCM0473  CL8 HEK-293T C98(0.73); C377(0.75); C521(1.06)  LDD1676  [10]
 LDCM0474  CL80 HEK-293T C98(0.89); C377(0.83); C521(1.34)  LDD1677  [10]
 LDCM0475  CL81 HEK-293T C98(1.00)  LDD1678  [10]
 LDCM0476  CL82 HEK-293T C98(1.13)  LDD1679  [10]
 LDCM0477  CL83 HEK-293T C98(0.94)  LDD1680  [10]
 LDCM0478  CL84 HEK-293T C98(1.04); C377(0.99); C521(1.17)  LDD1681  [10]
 LDCM0479  CL85 HEK-293T C98(0.95); C377(0.96)  LDD1682  [10]
 LDCM0480  CL86 HEK-293T C98(0.97)  LDD1683  [10]
 LDCM0481  CL87 HEK-293T C98(0.95); C377(1.03)  LDD1684  [10]
 LDCM0483  CL89 HEK-293T C98(1.08); C377(1.06)  LDD1686  [10]
 LDCM0484  CL9 HEK-293T C98(0.97)  LDD1687  [10]
 LDCM0485  CL90 HEK-293T C98(0.98)  LDD1688  [10]
 LDCM0486  CL91 HEK-293T C98(0.92); C521(1.02)  LDD1689  [10]
 LDCM0487  CL92 HEK-293T C98(0.80); C377(1.03); C521(1.38)  LDD1690  [10]
 LDCM0488  CL93 HEK-293T C98(0.97)  LDD1691  [10]
 LDCM0489  CL94 HEK-293T C98(1.12)  LDD1692  [10]
 LDCM0490  CL95 HEK-293T C98(0.94)  LDD1693  [10]
 LDCM0491  CL96 HEK-293T C98(0.92); C377(0.95); C521(1.04)  LDD1694  [10]
 LDCM0492  CL97 HEK-293T C98(0.96); C377(1.02)  LDD1695  [10]
 LDCM0493  CL98 HEK-293T C98(0.99)  LDD1696  [10]
 LDCM0494  CL99 HEK-293T C98(1.00); C377(1.09)  LDD1697  [10]
 LDCM0495  E2913 HEK-293T C98(0.97); C377(1.29)  LDD1698  [10]
 LDCM0213  Electrophilic fragment 2 MDA-MB-231 C377(1.12); C521(0.99)  LDD1702  [11]
 LDCM0572  Fragment10 Ramos C98(0.11)  LDD2189  [12]
 LDCM0573  Fragment11 Ramos C98(0.32)  LDD2190  [12]
 LDCM0574  Fragment12 Ramos C98(0.18)  LDD2191  [12]
 LDCM0575  Fragment13 Ramos C521(0.71)  LDD2192  [12]
 LDCM0576  Fragment14 Ramos C98(0.77)  LDD2193  [12]
 LDCM0579  Fragment20 Ramos C521(0.96)  LDD2194  [12]
 LDCM0580  Fragment21 Ramos C98(1.15); C521(0.88)  LDD2195  [12]
 LDCM0582  Fragment23 Ramos C98(0.24)  LDD2196  [12]
 LDCM0578  Fragment27 Ramos C98(0.56); C521(0.67)  LDD2197  [12]
 LDCM0586  Fragment28 Ramos C98(0.61)  LDD2198  [12]
 LDCM0589  Fragment31 Ramos C98(0.45)  LDD2200  [12]
 LDCM0468  Fragment33 HEK-293T C98(0.97); C377(1.11)  LDD1671  [10]
 LDCM0596  Fragment38 Ramos C521(0.60)  LDD2203  [12]
 LDCM0566  Fragment4 Ramos C98(1.18)  LDD2184  [12]
 LDCM0427  Fragment51 HEK-293T C98(0.97)  LDD1631  [10]
 LDCM0610  Fragment52 Ramos C98(0.18)  LDD2204  [12]
 LDCM0569  Fragment7 Ramos C98(0.34)  LDD2186  [12]
 LDCM0571  Fragment9 Ramos C521(0.77)  LDD2188  [12]
 LDCM0022  KB02 HEK-293T C98(1.05); C521(1.02)  LDD1492  [10]
 LDCM0023  KB03 HEK-293T C98(1.02); C521(1.15)  LDD1497  [10]
 LDCM0024  KB05 COLO792 C98(2.72)  LDD3310  [1]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
DNA-directed RNA polymerase II subunit RPB1 (POLR2A) RNA polymerase beta' chain family P24928
DNA topoisomerase 3-beta-1 (TOP3B) Type IA topoisomerase family O95985

References

1 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
2 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
3 Targeted Proteomic Approaches for Proteome-Wide Characterizations of the AMP-Binding Capacities of Kinases. J Proteome Res. 2022 Aug 5;21(8):2063-2070. doi: 10.1021/acs.jproteome.2c00225. Epub 2022 Jul 12.
4 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
5 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
6 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
7 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
8 DFT-Guided Discovery of Ethynyl-Triazolyl-Phosphinates as Modular Electrophiles for Chemoselective Cysteine Bioconjugation and Profiling. Angew Chem Int Ed Engl. 2022 Oct 10;61(41):e202205348. doi: 10.1002/anie.202205348. Epub 2022 Aug 22.
Mass spectrometry data entry: PXD033004
9 Oxidant-Induced Bioconjugation for Protein Labeling in Live Cells. ACS Chem Biol. 2023 Jan 20;18(1):112-122. doi: 10.1021/acschembio.2c00740. Epub 2022 Dec 21.
10 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
11 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
12 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578