General Information of Target

Target ID LDTP05814
Target Name Battenin (CLN3)
Gene Name CLN3
Gene ID 1201
Synonyms
BTS; Battenin; Batten disease protein; Protein CLN3
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAH
DILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLH
LLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAV
ISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPG
GEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQ
GLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLL
ADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGI
SLSGLLALPLHDFLCQLS
Target Type
Clinical trial
Target Bioclass
Transporter and channel
Family
Battenin family
Subcellular location
Lysosome membrane
Function
Mediates microtubule-dependent, anterograde transport connecting the Golgi network, endosomes, autophagosomes, lysosomes and plasma membrane, and participates in several cellular processes such as regulation of lysosomal pH, lysosome protein degradation, receptor-mediated endocytosis, autophagy, transport of proteins and lipids from the TGN, apoptosis and synaptic transmission . Facilitates the proteins transport from trans-Golgi network (TGN)-to other membrane compartments such as transport of microdomain-associated proteins to the plasma membrane, IGF2R transport to the lysosome where it regulates the CTSD release leading to regulation of CTSD maturation and thereby APP intracellular processing. Moreover regulates CTSD activity in response to osmotic stress. Also binds galactosylceramide and transports it from the trans Golgi to the rafts, which may have immediate and downstream effects on cell survival by modulating ceramide synthesis. At the plasma membrane, regulates actin-dependent events including filopodia formation, cell migration, and pinocytosis through ARF1-CDC42 pathway and also the cytoskeleton organization through interaction with MYH10 and fodrin leading to the regulation of the plasma membrane association of Na+, K+ ATPase complex. Regulates synaptic transmission in the amygdala, hippocampus, and cerebellum through regulation of synaptic vesicles density and their proximity to active zones leading to modulation of short-term plasticity and age-dependent anxious behavior, learning and memory. Regulates autophagic vacuoles (AVs) maturation by modulating the trafficking between endocytic and autophagolysosomal/lysosomal compartments, which involves vesicle fusion leading to regulation of degradation process. Participates also in cellular homeostasis of compounds such as, water, ions, amino acids, proteins and lipids in several tissue namely in brain and kidney through regulation of their transport and synthesis.
TTD ID
T63190
Uniprot ID
Q13286
DrugMap ID
TTORF9W
Ensemble ID
ENST00000333496.14
HGNC ID
HGNC:2074

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
HEC1 SNV: p.L109P .
JHH7 Deletion: p.F50_V54delinsL .
NCIH1793 SNV: p.A33S .
SNGM SNV: p.R9W .
TOV21G SNV: p.A99D; p.E235Ter .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 3 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
YN-1
 Probe Info 
100.00  LDD0444  [1]
Johansson_61
 Probe Info 
_(6.41)  LDD1485  [2]
DBIA
 Probe Info 
C92(1.11)  LDD1508  [3]
PAL-AfBPP Probe
Click To Hide/Show 2 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C187
 Probe Info 
24.59  LDD1865  [4]
C191
 Probe Info 
18.64  LDD1868  [4]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0215  AC10 HEK-293T C92(1.11)  LDD1508  [3]
 LDCM0270  AC15 HEK-293T C92(1.17)  LDD1513  [3]
 LDCM0277  AC18 HEK-293T C92(1.12)  LDD1516  [3]
 LDCM0279  AC2 HEK-293T C92(0.99)  LDD1518  [3]
 LDCM0283  AC23 HEK-293T C92(1.13)  LDD1522  [3]
 LDCM0286  AC26 HEK-293T C92(1.09)  LDD1525  [3]
 LDCM0292  AC31 HEK-293T C92(1.02)  LDD1531  [3]
 LDCM0295  AC34 HEK-293T C92(1.04)  LDD1534  [3]
 LDCM0300  AC39 HEK-293T C92(1.08)  LDD1539  [3]
 LDCM0304  AC42 HEK-293T C92(1.02)  LDD1543  [3]
 LDCM0309  AC47 HEK-293T C92(1.05)  LDD1548  [3]
 LDCM0313  AC50 HEK-293T C92(1.07)  LDD1552  [3]
 LDCM0318  AC55 HEK-293T C92(1.00)  LDD1557  [3]
 LDCM0321  AC58 HEK-293T C92(1.13)  LDD1560  [3]
 LDCM0327  AC63 HEK-293T C92(1.15)  LDD1566  [3]
 LDCM0334  AC7 HEK-293T C92(1.13)  LDD1568  [3]
 LDCM0379  CL11 HEK-293T C92(1.34)  LDD1583  [3]
 LDCM0405  CL18 HEK-293T C92(1.09)  LDD1609  [3]
 LDCM0411  CL23 HEK-293T C92(1.03)  LDD1615  [3]
 LDCM0419  CL30 HEK-293T C92(1.03)  LDD1623  [3]
 LDCM0424  CL35 HEK-293T C92(1.07)  LDD1628  [3]
 LDCM0432  CL42 HEK-293T C92(0.93)  LDD1636  [3]
 LDCM0437  CL47 HEK-293T C92(1.02)  LDD1641  [3]
 LDCM0445  CL54 HEK-293T C92(2.00)  LDD1648  [3]
 LDCM0450  CL59 HEK-293T C92(1.20)  LDD1653  [3]
 LDCM0451  CL6 HEK-293T C92(1.65)  LDD1654  [3]
 LDCM0458  CL66 HEK-293T C92(1.27)  LDD1661  [3]
 LDCM0464  CL71 HEK-293T C92(1.04)  LDD1667  [3]
 LDCM0471  CL78 HEK-293T C92(1.07)  LDD1674  [3]
 LDCM0477  CL83 HEK-293T C92(1.29)  LDD1680  [3]
 LDCM0485  CL90 HEK-293T C92(3.21)  LDD1688  [3]
 LDCM0490  CL95 HEK-293T C92(2.46)  LDD1693  [3]
 LDCM0569  Fragment7 Jurkat _(6.41)  LDD1485  [2]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Bis(monoacylglycero)phosphate synthase CLN5 (CLN5) CLN5 family O75503
Other
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Cadherin-related family member 3 (CDHR3) . Q6ZTQ4
Melanoma-associated antigen B6 (MAGEB6) . Q8N7X4

References

1 Ynamide Electrophile for the Profiling of Ligandable Carboxyl Residues in Live Cells and the Development of New Covalent Inhibitors. J Med Chem. 2022 Aug 11;65(15):10408-10418. doi: 10.1021/acs.jmedchem.2c00272. Epub 2022 Jul 26.
2 Proteome-wide covalent ligand discovery in native biological systems. Nature. 2016 Jun 23;534(7608):570-4. doi: 10.1038/nature18002. Epub 2016 Jun 15.
3 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
4 Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells. Science. 2024 Apr 26;384(6694):eadk5864. doi: 10.1126/science.adk5864. Epub 2024 Apr 26.
Mass spectrometry data entry: PXD041587