General Information of Target

Target ID LDTP18400
Target Name DENN domain-containing protein 2D (DENND2D)
Gene Name DENND2D
Gene ID 79961
Synonyms
DENN domain-containing protein 2D
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Sequence
MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPC
SQTQKAKFSLTSELHWADGFVIVYDISDRSSFAFAKALIYRIREPQTSHCKRAVESAVFL
VGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKE
KRRPSGSKSMAKLINNVFGKRRKSV
Target Bioclass
Other
Subcellular location
Cytoplasm
Function Guanine nucleotide exchange factor (GEF) which may activate RAB9A and RAB9B. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form.
Uniprot ID
Q9H6A0
Ensemble ID
ENST00000357640.9
HGNC ID
HGNC:26192

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
MINO Deletion: p.Y77NfsTer49 .
YSCCC SNV: p.E215K .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 5 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
Johansson_61
 Probe Info 
_(20.00)  LDD1487  [1]
YY4-yne
 Probe Info 
4.68  LDD0400  [2]
HPAP
 Probe Info 
4.43  LDD0064  [3]
DBIA
 Probe Info 
C104(38.94)  LDD0209  [4]
IA-alkyne
 Probe Info 
N.A.  LDD0162  [5]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0616  Fragment61 Jurkat _(10.77)  LDD1489  [1]
 LDCM0615  Fragment63-R Jurkat _(20.00)  LDD1487  [1]
 LDCM0022  KB02 AGS C104(1.18)  LDD2263  [6]
 LDCM0023  KB03 Jurkat C104(38.94)  LDD0209  [4]
 LDCM0024  KB05 HMCB C104(1.68)  LDD3312  [6]
 LDCM0014  Panhematin hPBMC 4.43  LDD0064  [3]
 LDCM0154  YY4 T cell 4.68  LDD0400  [2]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Other
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Protein FAM9B (FAM9B) FAM9 family Q8IZU0

References

1 Proteome-wide covalent ligand discovery in native biological systems. Nature. 2016 Jun 23;534(7608):570-4. doi: 10.1038/nature18002. Epub 2016 Jun 15.
2 A Chemical Proteomic Probe for the Mitochondrial Pyruvate Carrier Complex. Angew Chem Int Ed Engl. 2020 Mar 2;59(10):3896-3899. doi: 10.1002/anie.201914391. Epub 2020 Feb 11.
3 A Chemical Proteomic Map of Heme-Protein Interactions. J Am Chem Soc. 2022 Aug 24;144(33):15013-15019. doi: 10.1021/jacs.2c06104. Epub 2022 Aug 12.
Mass spectrometry data entry: PXD034651
4 Covalent Inhibition by a Natural Product-Inspired Latent Electrophile. J Am Chem Soc. 2023 May 24;145(20):11097-11109. doi: 10.1021/jacs.3c00598. Epub 2023 May 15.
5 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
6 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840