General Information of Target

Target ID LDTP02338
Target Name CD48 antigen (CD48)
Gene Name CD48
Gene ID 962
Synonyms
BCM1; BLAST1; CD48 antigen; B-lymphocyte activation marker BLAST-1; BCM1 surface antigen; Leukocyte antigen MEM-102; SLAM family member 2; SLAMF2; Signaling lymphocytic activation molecule 2; TCT.1; CD antigen CD48
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY
TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE
WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV
LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGL
LLT
Target Bioclass
Immunoglobulin
Subcellular location
Cell membrane
Function
Glycosylphosphatidylinositol (GPI)-anchored cell surface glycoprotein that interacts via its N-terminal immunoglobulin domain with cell surface receptors including 2B4/CD244 or CD2 to regulate immune cell function and activation. Participates in T-cell signaling transduction by associating with CD2 and efficiently bringing the Src family protein kinase LCK and LAT to the TCR/CD3 complex. In turn, promotes LCK phosphorylation and subsequent activation. Induces the phosphorylation of the cytoplasmic immunoreceptortyrosine switch motifs (ITSMs) of CD244 initiating a series of signaling events that leads to the generation of the immunological synapse and the directed release of cytolytic granules containing perforin and granzymes by T-lymphocytes and NK-cells.
Uniprot ID
P09326
Ensemble ID
ENST00000368045.3
HGNC ID
HGNC:1683

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
HCT116 Deletion: p.K114RfsTer28 .
HT115 SNV: p.D129A .
LS180 SNV: p.S203I .
SNU1 SNV: p.I108T .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 3 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C148(1.48)  LDD3372  [1]
IA-alkyne
 Probe Info 
N.A.  LDD0036  [2]
Lodoacetamide azide
 Probe Info 
N.A.  LDD0037  [2]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0201  EV-3 T cell C193, C196(6.25)  LDD0515  [3]
 LDCM0202  EV-93 T cell C148(8.14); C193, C196(6.88)  LDD0514  [3]
 LDCM0625  F8 Ramos C148(0.53)  LDD2187  [4]
 LDCM0572  Fragment10 Ramos C148(3.75)  LDD2189  [4]
 LDCM0573  Fragment11 Ramos C148(2.34)  LDD2190  [4]
 LDCM0574  Fragment12 Ramos C148(3.91)  LDD2191  [4]
 LDCM0575  Fragment13 Ramos C148(1.22)  LDD2192  [4]
 LDCM0576  Fragment14 Ramos C148(1.64)  LDD2193  [4]
 LDCM0580  Fragment21 Ramos C148(1.15)  LDD2195  [4]
 LDCM0582  Fragment23 Ramos C148(1.25)  LDD2196  [4]
 LDCM0578  Fragment27 Ramos C148(1.12)  LDD2197  [4]
 LDCM0586  Fragment28 Ramos C148(0.86)  LDD2198  [4]
 LDCM0588  Fragment30 Ramos C148(1.47)  LDD2199  [4]
 LDCM0589  Fragment31 Ramos C148(1.19)  LDD2200  [4]
 LDCM0590  Fragment32 Ramos C148(3.20)  LDD2201  [4]
 LDCM0468  Fragment33 Ramos C148(1.46)  LDD2202  [4]
 LDCM0596  Fragment38 Ramos C148(1.06)  LDD2203  [4]
 LDCM0566  Fragment4 Ramos C148(1.54)  LDD2184  [4]
 LDCM0610  Fragment52 Ramos C148(1.54)  LDD2204  [4]
 LDCM0614  Fragment56 Ramos C148(1.22)  LDD2205  [4]
 LDCM0571  Fragment9 Ramos C148(3.66)  LDD2188  [4]
 LDCM0022  KB02 T cell-activated C193, C196(7.35)  LDD1704  [3]
 LDCM0023  KB03 Ramos C148(1.76)  LDD2183  [4]
 LDCM0024  KB05 OCI-Ly3 C148(1.48)  LDD3372  [1]
 LDCM0169  KB63 Ramos 8.95  LDD0432  [5]
 LDCM0131  RA190 MM1.R C148(1.35); C193(1.28); C196(1.28)  LDD0304  [6]
 LDCM0170  Structure8 Ramos 20.00  LDD0433  [5]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Immunoglobulin
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Natural killer cell receptor 2B4 (CD244) . Q9BZW8

References

1 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
2 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
3 An Activity-Guided Map of Electrophile-Cysteine Interactions in Primary Human T Cells. Cell. 2020 Aug 20;182(4):1009-1026.e29. doi: 10.1016/j.cell.2020.07.001. Epub 2020 Jul 29.
4 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578
5 2-Sulfonylpyridines as Tunable, Cysteine-Reactive Electrophiles. J Am Chem Soc. 2020 May 13;142(19):8972-8979. doi: 10.1021/jacs.0c02721. Epub 2020 Apr 29.
6 Physical and Functional Analysis of the Putative Rpn13 Inhibitor RA190. Cell Chem Biol. 2020 Nov 19;27(11):1371-1382.e6. doi: 10.1016/j.chembiol.2020.08.007. Epub 2020 Aug 27.