General Information of Target

Target ID LDTP12827
Target Name Palmitoyltransferase ZDHHC3 (ZDHHC3)
Gene Name ZDHHC3
Gene ID 51304
Synonyms
Palmitoyltransferase ZDHHC3; EC 2.3.1.225; Acyltransferase ZDHHC3; EC 2.3.1.-; Protein DHHC1; Zinc finger DHHC domain-containing protein 3; DHHC-3
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRMYSRDYRRD
YRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSV
SSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLK
SKSQEEPKDTFEHDPSESIDEFNKSSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSS
SCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIHHIPSRRS
PAKTIAPQNAPRDESRGRSSFYPDGGDQETAKTGKFLKRFTDEESRVFLLDRGNTRDKEA
SKEKGSEKGRAEGEWEDQEALDYFSDKESGKQKFNDSEGDDTEETEDYRQFRKSVLADQG
KSFATASHRNTEEEGLKYKSKVSLKGNRESDGFREEKNYKLKETGYVVERPSTTKDKHKE
EDKNSERITVKKETQSPEQVKSEKLKDLFDYSPPLHKNLDAREKSTFREESPLRIKMIAS
DSHRPEVKLKMAPVPLDDSNRPASLTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQASKS
TSESFIQHIVSLVHHVKEQYFKSAAMTLNERFTSYQKATEEHSTRQKSPEIHRRIDISPS
TLRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDIDRRRKERSKERGDSKGSRESSGS
RKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKEREEEFKTH
HEMKEYSGFAGVSRPRGTFFRIRGRGRARGVFAGTNTGPNNSNTTFQKRPKEEEWDPEYT
PKSKKYFLHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVED
EEETMENNEEKKDRRKEEKE
Target Bioclass
Enzyme
Family
DHHC palmitoyltransferase family
Subcellular location
Golgi apparatus membrane
Function
Golgi-localized palmitoyltransferase that catalyzes the addition of palmitate onto various protein substrates. Has no stringent fatty acid selectivity and in addition to palmitate can also transfer onto target proteins myristate from tetradecanoyl-CoA and stearate from octadecanoyl-CoA. Plays an important role in G protein-coupled receptor signaling pathways involving GNAQ and potentially other heterotrimeric G proteins by regulating their dynamic association with the plasma membrane. Palmitoylates ITGA6 and ITGB4, thereby regulating the alpha-6/beta-4 integrin localization, expression and function in cell adhesion to laminin. Plays a role in the TRAIL-activated apoptotic signaling pathway most probably through the palmitoylation and localization to the plasma membrane of TNFRSF10A. In the brain, by palmitoylating the gamma subunit GABRG2 of GABA(A) receptors and regulating their postsynaptic accumulation, plays a role in synaptic GABAergic inhibitory function and GABAergic innervation. Palmitoylates the neuronal protein GAP43 which is also involved in the formation of GABAergic synapses. Palmitoylates NCDN thereby regulating its association with endosome membranes. Probably palmitoylates PRCD and is involved in its proper localization within the photoreceptor. Could mediate the palmitoylation of NCAM1 and regulate neurite outgrowth. Could palmitoylate DNAJC5 and regulate its localization to Golgi membranes. Also constitutively palmitoylates DLG4. May also palmitoylate SNAP25. Could palmitoylate the glutamate receptors GRIA1 and GRIA2 but this has not been confirmed in vivo. Could also palmitoylate the D(2) dopamine receptor DRD2. May also palmitoylate LAMTOR1, promoting its localization to lysosomal membranes.; May also function as a calcium transporter.
Uniprot ID
Q9NYG2
Ensemble ID
ENST00000296127.7
HGNC ID
HGNC:18470

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
CAL51 SNV: p.S144N .
DOTC24510 SNV: p.L252F .
HEC1B SNV: p.S144G .
NCIH1703 Deletion: p.K131NfsTer34 .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 3 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
STPyne
 Probe Info 
K128(10.00); K147(6.47)  LDD0277  [1]
IPM
 Probe Info 
C133(0.96)  LDD1701  [2]
DBIA
 Probe Info 
C143(1.03); C133(1.02)  LDD1492  [3]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HEK-293T C146(0.87)  LDD1507  [3]
 LDCM0215  AC10 HEK-293T C146(1.06)  LDD1508  [3]
 LDCM0226  AC11 HEK-293T C133(1.03)  LDD1509  [3]
 LDCM0259  AC14 HEK-293T C133(1.14)  LDD1512  [3]
 LDCM0270  AC15 HEK-293T C146(1.03)  LDD1513  [3]
 LDCM0276  AC17 HEK-293T C146(0.89)  LDD1515  [3]
 LDCM0277  AC18 HEK-293T C146(1.06)  LDD1516  [3]
 LDCM0278  AC19 HEK-293T C133(1.13)  LDD1517  [3]
 LDCM0279  AC2 HEK-293T C146(1.01)  LDD1518  [3]
 LDCM0281  AC21 HEK-293T C132(1.07)  LDD1520  [3]
 LDCM0282  AC22 HEK-293T C133(1.01)  LDD1521  [3]
 LDCM0283  AC23 HEK-293T C146(0.92)  LDD1522  [3]
 LDCM0284  AC24 HEK-293T C133(0.97)  LDD1523  [3]
 LDCM0285  AC25 HEK-293T C146(1.02)  LDD1524  [3]
 LDCM0286  AC26 HEK-293T C146(1.11)  LDD1525  [3]
 LDCM0287  AC27 HEK-293T C133(1.04)  LDD1526  [3]
 LDCM0289  AC29 HEK-293T C132(1.05)  LDD1528  [3]
 LDCM0290  AC3 HEK-293T C133(1.02)  LDD1529  [3]
 LDCM0291  AC30 HEK-293T C133(1.01)  LDD1530  [3]
 LDCM0292  AC31 HEK-293T C146(0.97)  LDD1531  [3]
 LDCM0293  AC32 HEK-293T C133(1.08)  LDD1532  [3]
 LDCM0294  AC33 HEK-293T C146(1.08)  LDD1533  [3]
 LDCM0295  AC34 HEK-293T C146(1.06)  LDD1534  [3]
 LDCM0296  AC35 HEK-293T C133(0.97)  LDD1535  [3]
 LDCM0298  AC37 HEK-293T C132(1.04)  LDD1537  [3]
 LDCM0299  AC38 HEK-293T C133(1.07)  LDD1538  [3]
 LDCM0300  AC39 HEK-293T C146(1.08)  LDD1539  [3]
 LDCM0302  AC40 HEK-293T C133(1.15)  LDD1541  [3]
 LDCM0303  AC41 HEK-293T C146(0.94)  LDD1542  [3]
 LDCM0304  AC42 HEK-293T C146(0.98)  LDD1543  [3]
 LDCM0305  AC43 HEK-293T C133(0.96)  LDD1544  [3]
 LDCM0307  AC45 HEK-293T C132(1.10)  LDD1546  [3]
 LDCM0308  AC46 HEK-293T C133(1.11)  LDD1547  [3]
 LDCM0309  AC47 HEK-293T C146(0.99)  LDD1548  [3]
 LDCM0310  AC48 HEK-293T C133(1.17)  LDD1549  [3]
 LDCM0311  AC49 HEK-293T C146(1.14)  LDD1550  [3]
 LDCM0312  AC5 HEK-293T C132(0.91)  LDD1551  [3]
 LDCM0313  AC50 HEK-293T C146(0.99)  LDD1552  [3]
 LDCM0314  AC51 HEK-293T C133(1.01)  LDD1553  [3]
 LDCM0316  AC53 HEK-293T C132(1.04)  LDD1555  [3]
 LDCM0317  AC54 HEK-293T C133(1.04)  LDD1556  [3]
 LDCM0318  AC55 HEK-293T C146(0.98)  LDD1557  [3]
 LDCM0319  AC56 HEK-293T C133(0.94)  LDD1558  [3]
 LDCM0320  AC57 HEK-293T C146(1.29)  LDD1559  [3]
 LDCM0321  AC58 HEK-293T C146(0.94)  LDD1560  [3]
 LDCM0322  AC59 HEK-293T C133(0.98)  LDD1561  [3]
 LDCM0323  AC6 HEK-293T C133(1.09)  LDD1562  [3]
 LDCM0325  AC61 HEK-293T C132(1.07)  LDD1564  [3]
 LDCM0326  AC62 HEK-293T C133(1.03)  LDD1565  [3]
 LDCM0327  AC63 HEK-293T C146(0.99)  LDD1566  [3]
 LDCM0328  AC64 HEK-293T C133(0.99)  LDD1567  [3]
 LDCM0334  AC7 HEK-293T C146(1.02)  LDD1568  [3]
 LDCM0345  AC8 HEK-293T C133(0.95)  LDD1569  [3]
 LDCM0248  AKOS034007472 HEK-293T C132(1.09)  LDD1511  [3]
 LDCM0356  AKOS034007680 HEK-293T C146(0.99)  LDD1570  [3]
 LDCM0275  AKOS034007705 HEK-293T C133(1.13)  LDD1514  [3]
 LDCM0368  CL10 HEK-293T C133(0.96)  LDD1572  [3]
 LDCM0369  CL100 HEK-293T C146(0.90)  LDD1573  [3]
 LDCM0372  CL103 HEK-293T C146(1.15)  LDD1576  [3]
 LDCM0373  CL104 HEK-293T C146(0.88)  LDD1577  [3]
 LDCM0376  CL107 HEK-293T C146(1.01)  LDD1580  [3]
 LDCM0377  CL108 HEK-293T C146(0.96)  LDD1581  [3]
 LDCM0379  CL11 HEK-293T C146(1.07)  LDD1583  [3]
 LDCM0381  CL111 HEK-293T C146(0.94)  LDD1585  [3]
 LDCM0382  CL112 HEK-293T C146(1.00)  LDD1586  [3]
 LDCM0385  CL115 HEK-293T C146(1.22)  LDD1589  [3]
 LDCM0386  CL116 HEK-293T C146(1.00)  LDD1590  [3]
 LDCM0389  CL119 HEK-293T C146(1.22)  LDD1593  [3]
 LDCM0390  CL12 HEK-293T C133(0.99)  LDD1594  [3]
 LDCM0391  CL120 HEK-293T C146(0.91)  LDD1595  [3]
 LDCM0394  CL123 HEK-293T C146(1.01)  LDD1598  [3]
 LDCM0395  CL124 HEK-293T C146(0.84)  LDD1599  [3]
 LDCM0398  CL127 HEK-293T C146(0.99)  LDD1602  [3]
 LDCM0399  CL128 HEK-293T C146(0.87)  LDD1603  [3]
 LDCM0402  CL15 HEK-293T C146(1.08)  LDD1606  [3]
 LDCM0403  CL16 HEK-293T C146(0.97)  LDD1607  [3]
 LDCM0404  CL17 HEK-293T C146(0.98)  LDD1608  [3]
 LDCM0405  CL18 HEK-293T C146(1.17)  LDD1609  [3]
 LDCM0406  CL19 HEK-293T C133(1.05)  LDD1610  [3]
 LDCM0409  CL21 HEK-293T C132(1.08)  LDD1613  [3]
 LDCM0410  CL22 HEK-293T C133(1.01)  LDD1614  [3]
 LDCM0411  CL23 HEK-293T C146(1.05)  LDD1615  [3]
 LDCM0412  CL24 HEK-293T C133(1.00)  LDD1616  [3]
 LDCM0415  CL27 HEK-293T C146(1.05)  LDD1619  [3]
 LDCM0416  CL28 HEK-293T C146(1.00)  LDD1620  [3]
 LDCM0417  CL29 HEK-293T C146(0.93)  LDD1621  [3]
 LDCM0418  CL3 HEK-293T C146(1.09)  LDD1622  [3]
 LDCM0419  CL30 HEK-293T C146(1.05)  LDD1623  [3]
 LDCM0420  CL31 HEK-293T C133(1.05)  LDD1624  [3]
 LDCM0422  CL33 HEK-293T C132(1.15)  LDD1626  [3]
 LDCM0423  CL34 HEK-293T C133(1.07)  LDD1627  [3]
 LDCM0424  CL35 HEK-293T C146(1.11)  LDD1628  [3]
 LDCM0425  CL36 HEK-293T C133(1.15)  LDD1629  [3]
 LDCM0428  CL39 HEK-293T C146(0.98)  LDD1632  [3]
 LDCM0429  CL4 HEK-293T C146(0.83)  LDD1633  [3]
 LDCM0430  CL40 HEK-293T C146(0.97)  LDD1634  [3]
 LDCM0431  CL41 HEK-293T C146(1.16)  LDD1635  [3]
 LDCM0432  CL42 HEK-293T C146(1.13)  LDD1636  [3]
 LDCM0433  CL43 HEK-293T C133(0.96)  LDD1637  [3]
 LDCM0435  CL45 HEK-293T C132(1.08)  LDD1639  [3]
 LDCM0436  CL46 HEK-293T C133(1.10)  LDD1640  [3]
 LDCM0437  CL47 HEK-293T C146(1.10)  LDD1641  [3]
 LDCM0438  CL48 HEK-293T C133(0.87)  LDD1642  [3]
 LDCM0440  CL5 HEK-293T C146(1.14)  LDD1644  [3]
 LDCM0443  CL52 HEK-293T C146(0.91)  LDD1646  [3]
 LDCM0444  CL53 HEK-293T C146(1.19)  LDD1647  [3]
 LDCM0445  CL54 HEK-293T C146(1.08)  LDD1648  [3]
 LDCM0446  CL55 HEK-293T C133(0.99)  LDD1649  [3]
 LDCM0448  CL57 HEK-293T C132(1.01)  LDD1651  [3]
 LDCM0449  CL58 HEK-293T C133(1.20)  LDD1652  [3]
 LDCM0450  CL59 HEK-293T C146(1.03)  LDD1653  [3]
 LDCM0451  CL6 HEK-293T C146(1.12)  LDD1654  [3]
 LDCM0452  CL60 HEK-293T C133(1.11)  LDD1655  [3]
 LDCM0455  CL63 HEK-293T C146(1.15)  LDD1658  [3]
 LDCM0456  CL64 HEK-293T C146(1.07)  LDD1659  [3]
 LDCM0457  CL65 HEK-293T C146(0.97)  LDD1660  [3]
 LDCM0458  CL66 HEK-293T C146(1.09)  LDD1661  [3]
 LDCM0459  CL67 HEK-293T C133(1.01)  LDD1662  [3]
 LDCM0461  CL69 HEK-293T C132(1.03)  LDD1664  [3]
 LDCM0462  CL7 HEK-293T C133(0.97)  LDD1665  [3]
 LDCM0463  CL70 HEK-293T C133(1.03)  LDD1666  [3]
 LDCM0464  CL71 HEK-293T C146(0.94)  LDD1667  [3]
 LDCM0465  CL72 HEK-293T C133(1.46)  LDD1668  [3]
 LDCM0469  CL76 HEK-293T C146(0.91)  LDD1672  [3]
 LDCM0470  CL77 HEK-293T C146(0.98)  LDD1673  [3]
 LDCM0471  CL78 HEK-293T C146(1.08)  LDD1674  [3]
 LDCM0472  CL79 HEK-293T C133(0.99)  LDD1675  [3]
 LDCM0475  CL81 HEK-293T C132(1.11)  LDD1678  [3]
 LDCM0476  CL82 HEK-293T C133(1.01)  LDD1679  [3]
 LDCM0477  CL83 HEK-293T C146(1.06)  LDD1680  [3]
 LDCM0478  CL84 HEK-293T C133(1.09)  LDD1681  [3]
 LDCM0481  CL87 HEK-293T C146(1.05)  LDD1684  [3]
 LDCM0482  CL88 HEK-293T C146(0.77)  LDD1685  [3]
 LDCM0483  CL89 HEK-293T C146(0.94)  LDD1686  [3]
 LDCM0484  CL9 HEK-293T C132(1.03)  LDD1687  [3]
 LDCM0485  CL90 HEK-293T C146(1.34)  LDD1688  [3]
 LDCM0486  CL91 HEK-293T C133(1.04)  LDD1689  [3]
 LDCM0488  CL93 HEK-293T C132(1.09)  LDD1691  [3]
 LDCM0489  CL94 HEK-293T C133(1.04)  LDD1692  [3]
 LDCM0490  CL95 HEK-293T C146(1.16)  LDD1693  [3]
 LDCM0491  CL96 HEK-293T C133(1.12)  LDD1694  [3]
 LDCM0494  CL99 HEK-293T C146(1.12)  LDD1697  [3]
 LDCM0495  E2913 HEK-293T C146(1.18)  LDD1698  [3]
 LDCM0213  Electrophilic fragment 2 MDA-MB-231 C132(4.70); C146(2.54)  LDD1702  [2]
 LDCM0468  Fragment33 HEK-293T C146(1.16)  LDD1671  [3]
 LDCM0022  KB02 HEK-293T C143(1.03); C133(1.02)  LDD1492  [3]
 LDCM0023  KB03 HEK-293T C143(0.96); C133(1.02)  LDD1497  [3]
 LDCM0024  KB05 HEK-293T C143(1.05); C133(1.00)  LDD1502  [3]

References

1 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
2 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
3 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402