General Information of Target

Target ID LDTP12715
Target Name E3 ubiquitin-protein ligase RNF216 (RNF216)
Gene Name RNF216
Gene ID 54476
Synonyms
TRIAD3; UBCE7IP1; ZIN; E3 ubiquitin-protein ligase RNF216; EC 2.3.2.27; RING finger protein 216; RING-type E3 ubiquitin transferase RNF216; Triad domain-containing protein 3; Ubiquitin-conjugating enzyme 7-interacting protein 1; Zinc finger protein inhibiting NF-kappa-B
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Sequence
MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL
GLLVVTLWRQLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV
LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT
SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA
EEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSV
QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA
ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL
LGAGAMFPPTSIYHVFQSRKDCVDPCGP
Target Bioclass
Enzyme
Subcellular location
Cytoplasm
Function
[Isoform 1]: E3 ubiquitin ligase which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their ubiquitination. Plays a role in the regulation of antiviral responses by promoting the degradation of TRAF3, TLR4 and TLR9. In turn, down-regulates NF-kappa-B and IRF3 activation as well as beta interferon production. Participates also in the regulation of autophagy by ubiquitinating BECN1 leading to its degradation and autophagy inhibition. Plays a role in ARC-dependent synaptic plasticity by mediating ARC ubiquitination resulting in its rapid proteasomal degradation. Plays aso an essential role in spermatogenesis and male fertility. Mechanistically, regulates meiosis by promoting the degradation of PRKACB through the ubiquitin-mediated lysosome pathway. Modulates the gonadotropin-releasing hormone signal pathway by affecting the stability of STAU2 that is required for the microtubule-dependent transport of neuronal RNA from the cell body to the dendrite.; [Isoform 3]: Inhibits TNF and IL-1 mediated activation of NF-kappa-B. Promotes TNF and RIP mediated apoptosis.
Uniprot ID
Q9NWF9
Ensemble ID
ENST00000389902.8
HGNC ID
HGNC:21698

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
HDQP1 SNV: p.E278K; p.D371Y DBIA    Probe Info 
HEC1 SNV: p.Q53Ter; p.R645Ter .
HEC1B SNV: p.R645Ter .
HT115 SNV: p.D438N .
KU1919 SNV: p.L696I .
LS180 SNV: p.D168A .
NCIH716 SNV: p.A653P .
OCUG1 SNV: p.E707Q .
RCC10RGB SNV: p.I638M DBIA    Probe Info 

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 5 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C75(3.99)  LDD3314  [1]
IA-alkyne
 Probe Info 
N.A.  LDD2241  [2]
NAIA_5
 Probe Info 
N.A.  LDD2224  [3]
NHS
 Probe Info 
N.A.  LDD0010  [4]
TFBX
 Probe Info 
N.A.  LDD0148  [5]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HEK-293T C370(1.01)  LDD1507  [6]
 LDCM0215  AC10 HEK-293T C370(1.20)  LDD1508  [6]
 LDCM0237  AC12 HEK-293T C370(1.01)  LDD1510  [6]
 LDCM0259  AC14 HEK-293T C370(0.93); C648(1.03)  LDD1512  [6]
 LDCM0270  AC15 HEK-293T C370(1.00)  LDD1513  [6]
 LDCM0276  AC17 HEK-293T C370(0.93)  LDD1515  [6]
 LDCM0277  AC18 HEK-293T C370(1.12)  LDD1516  [6]
 LDCM0279  AC2 HEK-293T C370(1.15)  LDD1518  [6]
 LDCM0280  AC20 HEK-293T C370(1.01)  LDD1519  [6]
 LDCM0281  AC21 HEK-293T C370(0.91)  LDD1520  [6]
 LDCM0282  AC22 HEK-293T C370(0.99); C648(0.99)  LDD1521  [6]
 LDCM0283  AC23 HEK-293T C370(0.97)  LDD1522  [6]
 LDCM0284  AC24 HEK-293T C370(1.03); C648(1.04)  LDD1523  [6]
 LDCM0285  AC25 HEK-293T C370(0.90)  LDD1524  [6]
 LDCM0286  AC26 HEK-293T C370(1.17)  LDD1525  [6]
 LDCM0288  AC28 HEK-293T C370(1.03)  LDD1527  [6]
 LDCM0289  AC29 HEK-293T C370(1.02)  LDD1528  [6]
 LDCM0291  AC30 HEK-293T C370(0.99); C648(1.31)  LDD1530  [6]
 LDCM0292  AC31 HEK-293T C370(0.93)  LDD1531  [6]
 LDCM0293  AC32 HEK-293T C370(0.98); C648(1.13)  LDD1532  [6]
 LDCM0294  AC33 HEK-293T C370(1.10)  LDD1533  [6]
 LDCM0295  AC34 HEK-293T C370(1.18)  LDD1534  [6]
 LDCM0297  AC36 HEK-293T C370(1.03)  LDD1536  [6]
 LDCM0298  AC37 HEK-293T C370(1.16)  LDD1537  [6]
 LDCM0299  AC38 HEK-293T C370(1.21); C648(1.12)  LDD1538  [6]
 LDCM0300  AC39 HEK-293T C370(0.98)  LDD1539  [6]
 LDCM0301  AC4 HEK-293T C370(1.02)  LDD1540  [6]
 LDCM0302  AC40 HEK-293T C370(1.20); C648(1.05)  LDD1541  [6]
 LDCM0303  AC41 HEK-293T C370(1.01)  LDD1542  [6]
 LDCM0304  AC42 HEK-293T C370(1.12)  LDD1543  [6]
 LDCM0306  AC44 HEK-293T C370(1.01)  LDD1545  [6]
 LDCM0307  AC45 HEK-293T C370(1.09)  LDD1546  [6]
 LDCM0308  AC46 HEK-293T C370(0.99); C648(1.10)  LDD1547  [6]
 LDCM0309  AC47 HEK-293T C370(1.00)  LDD1548  [6]
 LDCM0310  AC48 HEK-293T C370(1.10); C648(1.12)  LDD1549  [6]
 LDCM0311  AC49 HEK-293T C370(1.10)  LDD1550  [6]
 LDCM0312  AC5 HEK-293T C370(1.19)  LDD1551  [6]
 LDCM0313  AC50 HEK-293T C370(1.22)  LDD1552  [6]
 LDCM0315  AC52 HEK-293T C370(1.10)  LDD1554  [6]
 LDCM0316  AC53 HEK-293T C370(1.09)  LDD1555  [6]
 LDCM0317  AC54 HEK-293T C370(1.15); C648(1.13)  LDD1556  [6]
 LDCM0318  AC55 HEK-293T C370(0.95)  LDD1557  [6]
 LDCM0319  AC56 HEK-293T C370(1.14); C648(1.15)  LDD1558  [6]
 LDCM0320  AC57 HEK-293T C370(0.90)  LDD1559  [6]
 LDCM0321  AC58 HEK-293T C370(1.13)  LDD1560  [6]
 LDCM0323  AC6 HEK-293T C370(1.15); C648(1.12)  LDD1562  [6]
 LDCM0324  AC60 HEK-293T C370(0.95)  LDD1563  [6]
 LDCM0325  AC61 HEK-293T C370(1.14)  LDD1564  [6]
 LDCM0326  AC62 HEK-293T C370(0.98); C648(1.05)  LDD1565  [6]
 LDCM0327  AC63 HEK-293T C370(0.92)  LDD1566  [6]
 LDCM0328  AC64 HEK-293T C370(1.18); C648(1.02)  LDD1567  [6]
 LDCM0334  AC7 HEK-293T C370(0.90)  LDD1568  [6]
 LDCM0345  AC8 HEK-293T C370(1.06); C648(1.09)  LDD1569  [6]
 LDCM0248  AKOS034007472 HEK-293T C370(1.14)  LDD1511  [6]
 LDCM0356  AKOS034007680 HEK-293T C370(1.02)  LDD1570  [6]
 LDCM0275  AKOS034007705 HEK-293T C370(1.13); C648(1.20)  LDD1514  [6]
 LDCM0367  CL1 HEK-293T C370(0.94)  LDD1571  [6]
 LDCM0368  CL10 HEK-293T C370(0.84); C648(1.33)  LDD1572  [6]
 LDCM0370  CL101 HEK-293T C370(0.99)  LDD1574  [6]
 LDCM0371  CL102 HEK-293T C370(1.11)  LDD1575  [6]
 LDCM0372  CL103 HEK-293T C370(1.03)  LDD1576  [6]
 LDCM0374  CL105 HEK-293T C370(0.93)  LDD1578  [6]
 LDCM0375  CL106 HEK-293T C370(1.08)  LDD1579  [6]
 LDCM0376  CL107 HEK-293T C370(0.95)  LDD1580  [6]
 LDCM0378  CL109 HEK-293T C370(0.96)  LDD1582  [6]
 LDCM0379  CL11 HEK-293T C370(0.95)  LDD1583  [6]
 LDCM0380  CL110 HEK-293T C370(0.85)  LDD1584  [6]
 LDCM0381  CL111 HEK-293T C370(0.88)  LDD1585  [6]
 LDCM0383  CL113 HEK-293T C370(0.99)  LDD1587  [6]
 LDCM0384  CL114 HEK-293T C370(0.93)  LDD1588  [6]
 LDCM0385  CL115 HEK-293T C370(0.88)  LDD1589  [6]
 LDCM0387  CL117 HEK-293T C370(1.07)  LDD1591  [6]
 LDCM0388  CL118 HEK-293T C370(1.04)  LDD1592  [6]
 LDCM0389  CL119 HEK-293T C370(1.06)  LDD1593  [6]
 LDCM0390  CL12 HEK-293T C370(0.97); C648(1.16)  LDD1594  [6]
 LDCM0392  CL121 HEK-293T C370(1.04)  LDD1596  [6]
 LDCM0393  CL122 HEK-293T C370(0.96)  LDD1597  [6]
 LDCM0394  CL123 HEK-293T C370(0.89)  LDD1598  [6]
 LDCM0396  CL125 HEK-293T C370(1.18)  LDD1600  [6]
 LDCM0397  CL126 HEK-293T C370(1.05)  LDD1601  [6]
 LDCM0398  CL127 HEK-293T C370(0.90)  LDD1602  [6]
 LDCM0400  CL13 HEK-293T C370(0.95)  LDD1604  [6]
 LDCM0401  CL14 HEK-293T C370(0.99)  LDD1605  [6]
 LDCM0402  CL15 HEK-293T C370(1.12)  LDD1606  [6]
 LDCM0404  CL17 HEK-293T C370(1.21)  LDD1608  [6]
 LDCM0405  CL18 HEK-293T C370(1.18)  LDD1609  [6]
 LDCM0407  CL2 HEK-293T C370(1.10)  LDD1611  [6]
 LDCM0408  CL20 HEK-293T C370(1.04)  LDD1612  [6]
 LDCM0409  CL21 HEK-293T C370(1.02)  LDD1613  [6]
 LDCM0410  CL22 HEK-293T C370(1.05); C648(1.03)  LDD1614  [6]
 LDCM0411  CL23 HEK-293T C370(1.13)  LDD1615  [6]
 LDCM0412  CL24 HEK-293T C370(1.01); C648(1.23)  LDD1616  [6]
 LDCM0413  CL25 HEK-293T C370(1.00)  LDD1617  [6]
 LDCM0414  CL26 HEK-293T C370(0.97)  LDD1618  [6]
 LDCM0415  CL27 HEK-293T C370(0.94)  LDD1619  [6]
 LDCM0417  CL29 HEK-293T C370(0.96)  LDD1621  [6]
 LDCM0418  CL3 HEK-293T C370(0.95)  LDD1622  [6]
 LDCM0419  CL30 HEK-293T C370(1.13)  LDD1623  [6]
 LDCM0421  CL32 HEK-293T C370(1.13)  LDD1625  [6]
 LDCM0422  CL33 HEK-293T C370(1.01)  LDD1626  [6]
 LDCM0423  CL34 HEK-293T C370(1.07); C648(1.07)  LDD1627  [6]
 LDCM0424  CL35 HEK-293T C370(1.03)  LDD1628  [6]
 LDCM0425  CL36 HEK-293T C370(1.08); C648(1.17)  LDD1629  [6]
 LDCM0426  CL37 HEK-293T C370(0.94)  LDD1630  [6]
 LDCM0428  CL39 HEK-293T C370(0.88)  LDD1632  [6]
 LDCM0431  CL41 HEK-293T C370(0.87)  LDD1635  [6]
 LDCM0432  CL42 HEK-293T C370(1.00)  LDD1636  [6]
 LDCM0434  CL44 HEK-293T C370(1.08)  LDD1638  [6]
 LDCM0435  CL45 HEK-293T C370(0.97)  LDD1639  [6]
 LDCM0436  CL46 HEK-293T C370(1.02); C648(1.09)  LDD1640  [6]
 LDCM0437  CL47 HEK-293T C370(0.92)  LDD1641  [6]
 LDCM0438  CL48 HEK-293T C370(0.98); C648(1.16)  LDD1642  [6]
 LDCM0439  CL49 HEK-293T C370(0.99)  LDD1643  [6]
 LDCM0440  CL5 HEK-293T C370(1.11)  LDD1644  [6]
 LDCM0441  CL50 HEK-293T C370(1.22)  LDD1645  [6]
 LDCM0444  CL53 HEK-293T C370(0.94)  LDD1647  [6]
 LDCM0445  CL54 HEK-293T C370(1.22)  LDD1648  [6]
 LDCM0447  CL56 HEK-293T C370(1.14)  LDD1650  [6]
 LDCM0448  CL57 HEK-293T C370(0.93)  LDD1651  [6]
 LDCM0449  CL58 HEK-293T C370(0.95); C648(1.22)  LDD1652  [6]
 LDCM0450  CL59 HEK-293T C370(1.16)  LDD1653  [6]
 LDCM0451  CL6 HEK-293T C370(1.17)  LDD1654  [6]
 LDCM0452  CL60 HEK-293T C370(1.07); C648(1.12)  LDD1655  [6]
 LDCM0453  CL61 HEK-293T C370(0.99)  LDD1656  [6]
 LDCM0454  CL62 HEK-293T C370(1.10)  LDD1657  [6]
 LDCM0455  CL63 HEK-293T C370(0.96)  LDD1658  [6]
 LDCM0457  CL65 HEK-293T C370(1.03)  LDD1660  [6]
 LDCM0458  CL66 HEK-293T C370(1.09)  LDD1661  [6]
 LDCM0460  CL68 HEK-293T C370(1.18)  LDD1663  [6]
 LDCM0461  CL69 HEK-293T C370(1.10)  LDD1664  [6]
 LDCM0463  CL70 HEK-293T C370(1.07); C648(1.14)  LDD1666  [6]
 LDCM0464  CL71 HEK-293T C370(1.11)  LDD1667  [6]
 LDCM0465  CL72 HEK-293T C370(1.00); C648(1.23)  LDD1668  [6]
 LDCM0466  CL73 HEK-293T C370(1.22)  LDD1669  [6]
 LDCM0467  CL74 HEK-293T C370(1.00)  LDD1670  [6]
 LDCM0470  CL77 HEK-293T C370(0.66)  LDD1673  [6]
 LDCM0471  CL78 HEK-293T C370(1.20)  LDD1674  [6]
 LDCM0473  CL8 HEK-293T C370(1.21)  LDD1676  [6]
 LDCM0474  CL80 HEK-293T C370(0.95)  LDD1677  [6]
 LDCM0475  CL81 HEK-293T C370(0.98)  LDD1678  [6]
 LDCM0476  CL82 HEK-293T C370(1.15); C648(1.04)  LDD1679  [6]
 LDCM0477  CL83 HEK-293T C370(0.99)  LDD1680  [6]
 LDCM0478  CL84 HEK-293T C370(0.98); C648(1.14)  LDD1681  [6]
 LDCM0479  CL85 HEK-293T C370(1.22)  LDD1682  [6]
 LDCM0480  CL86 HEK-293T C370(1.12)  LDD1683  [6]
 LDCM0481  CL87 HEK-293T C370(1.06)  LDD1684  [6]
 LDCM0483  CL89 HEK-293T C370(0.89)  LDD1686  [6]
 LDCM0484  CL9 HEK-293T C370(0.99)  LDD1687  [6]
 LDCM0485  CL90 HEK-293T C370(1.11)  LDD1688  [6]
 LDCM0487  CL92 HEK-293T C370(1.05)  LDD1690  [6]
 LDCM0488  CL93 HEK-293T C370(1.13)  LDD1691  [6]
 LDCM0489  CL94 HEK-293T C370(0.93); C648(1.11)  LDD1692  [6]
 LDCM0490  CL95 HEK-293T C370(0.87)  LDD1693  [6]
 LDCM0491  CL96 HEK-293T C370(1.21); C648(1.11)  LDD1694  [6]
 LDCM0492  CL97 HEK-293T C370(1.00)  LDD1695  [6]
 LDCM0493  CL98 HEK-293T C370(0.99)  LDD1696  [6]
 LDCM0494  CL99 HEK-293T C370(0.99)  LDD1697  [6]
 LDCM0495  E2913 HEK-293T C370(0.95)  LDD1698  [6]
 LDCM0468  Fragment33 HEK-293T C370(0.92)  LDD1671  [6]
 LDCM0427  Fragment51 HEK-293T C370(1.06)  LDD1631  [6]
 LDCM0022  KB02 HEK-293T C515(0.94)  LDD1492  [6]
 LDCM0023  KB03 HEK-293T C515(1.01)  LDD1497  [6]
 LDCM0024  KB05 IGR37 C75(3.99)  LDD3314  [1]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 7 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Protein KHNYN (KHNYN) N4BP1 family O15037
Calpain-15 (CAPN15) Peptidase C2 family O75808
Tumor necrosis factor alpha-induced protein 3 (TNFAIP3) Peptidase C64 family P21580
Ubiquitin-conjugating enzyme E2 L3 (UBE2L3) Ubiquitin-conjugating enzyme family P68036
Ubiquitin/ISG15-conjugating enzyme E2 L6 (UBE2L6) Ubiquitin-conjugating enzyme family O14933
Ubiquitin thioesterase OTU1 (YOD1) . Q5VVQ6
Ubiquitin-associated and SH3 domain-containing protein B (UBASH3B) . Q8TF42
Transporter and channel
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Optineurin (OPTN) . Q96CV9
Other
Click To Hide/Show 4 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Maturin (MTURN) MTURN family Q8N3F0
AN1-type zinc finger protein 2A (ZFAND2A) . Q8N6M9
MORC family CW-type zinc finger protein 3 (MORC3) . Q14149
Ubiquitin-associated domain-containing protein 1 (UBAC1) . Q9BSL1

References

1 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
2 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
3 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
4 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
5 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
6 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402