General Information of Target

Target ID LDTP12345
Target Name Homeobox protein SIX2 (SIX2)
Gene Name SIX2
Gene ID 10736
Synonyms
Homeobox protein SIX2; Sine oculis homeobox homolog 2
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENN
VFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAF
IANPSSTEISSITGNIELNQQTCLLTLRDYNNREKSEVSTDLIQANPKQGALAKKSSQTK
KKKKAFNSPKTGQNKTVQYPSDILENASVELFLDANKLPTPVVEQVAQINDNSELELTSV
VENTFPAQDIVHTVTVKRKRGKSQPNCALKEHSMSNIASVKSPYEAENSGEELDQRYSKA
KPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKC
ELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRC
GQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSF
ISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTKVHSGADKTLDSSAEDHTLSE
QDSIQKSPLSETMDVKPSDMTLPLALPLGTEDHHMLLPVTDTQSPTSDTLLRSTVNGYSE
PQLIFLQQLY
Target Bioclass
Transcription factor
Family
SIX/Sine oculis homeobox family
Subcellular location
Nucleus
Function
Transcription factor that plays an important role in the development of several organs, including kidney, skull and stomach. During kidney development, maintains cap mesenchyme multipotent nephron progenitor cells in an undifferentiated state by opposing the inductive signals emanating from the ureteric bud and cooperates with WNT9B to promote renewing progenitor cells proliferation. Acts through its interaction with TCF7L2 and OSR1 in a canonical Wnt signaling independent manner preventing transcription of differentiation genes in cap mesenchyme such as WNT4. Also acts independently of OSR1 to activate expression of many cap mesenchyme genes, including itself, GDNF and OSR1. During craniofacial development plays a role in growth and elongation of the cranial base through regulation of chondrocyte differentiation. During stomach organogenesis, controls pyloric sphincter formation and mucosal growth through regulation of a gene network including NKX2-5, BMPR1B, BMP4, SOX9 and GREM1. During branchial arch development, acts to mediate HOXA2 control over the insulin-like growth factor pathway. May also be involved in limb tendon and ligament development. Plays a role in cell proliferation and migration.
Uniprot ID
Q9NPC8
Ensemble ID
ENST00000303077.7
HGNC ID
HGNC:10888

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 3 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
AHL-Pu-1
 Probe Info 
C130(3.07)  LDD0172  [1]
DBIA
 Probe Info 
C130(2.03)  LDD0080  [2]
IPM
 Probe Info 
C40(0.00); C130(0.00)  LDD2156  [3]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0025  4SU-RNA HEK-293T C130(3.07)  LDD0172  [1]
 LDCM0214  AC1 HEK-293T C40(1.15)  LDD1507  [4]
 LDCM0226  AC11 HEK-293T C40(1.01)  LDD1509  [4]
 LDCM0237  AC12 HEK-293T C40(1.03)  LDD1510  [4]
 LDCM0259  AC14 HEK-293T C40(0.99)  LDD1512  [4]
 LDCM0270  AC15 HEK-293T C40(0.96)  LDD1513  [4]
 LDCM0276  AC17 HEK-293T C40(0.99)  LDD1515  [4]
 LDCM0278  AC19 HEK-293T C40(1.22)  LDD1517  [4]
 LDCM0280  AC20 HEK-293T C40(0.91)  LDD1519  [4]
 LDCM0281  AC21 HEK-293T C40(1.02)  LDD1520  [4]
 LDCM0282  AC22 HEK-293T C40(1.02)  LDD1521  [4]
 LDCM0283  AC23 HEK-293T C40(0.98)  LDD1522  [4]
 LDCM0285  AC25 HEK-293T C40(1.04)  LDD1524  [4]
 LDCM0287  AC27 HEK-293T C40(1.01)  LDD1526  [4]
 LDCM0288  AC28 HEK-293T C40(1.06)  LDD1527  [4]
 LDCM0289  AC29 HEK-293T C40(1.04)  LDD1528  [4]
 LDCM0290  AC3 HEK-293T C40(0.97)  LDD1529  [4]
 LDCM0291  AC30 HEK-293T C40(0.96)  LDD1530  [4]
 LDCM0292  AC31 HEK-293T C40(0.89)  LDD1531  [4]
 LDCM0294  AC33 HEK-293T C40(1.07)  LDD1533  [4]
 LDCM0296  AC35 HEK-293T C40(1.07)  LDD1535  [4]
 LDCM0297  AC36 HEK-293T C40(1.18)  LDD1536  [4]
 LDCM0298  AC37 HEK-293T C40(1.05)  LDD1537  [4]
 LDCM0299  AC38 HEK-293T C40(0.98)  LDD1538  [4]
 LDCM0300  AC39 HEK-293T C40(0.96)  LDD1539  [4]
 LDCM0301  AC4 HEK-293T C40(1.09)  LDD1540  [4]
 LDCM0303  AC41 HEK-293T C40(1.03)  LDD1542  [4]
 LDCM0305  AC43 HEK-293T C40(0.98)  LDD1544  [4]
 LDCM0306  AC44 HEK-293T C40(1.14)  LDD1545  [4]
 LDCM0307  AC45 HEK-293T C40(1.10)  LDD1546  [4]
 LDCM0308  AC46 HEK-293T C40(1.03)  LDD1547  [4]
 LDCM0309  AC47 HEK-293T C40(0.92)  LDD1548  [4]
 LDCM0311  AC49 HEK-293T C40(1.00)  LDD1550  [4]
 LDCM0312  AC5 HEK-293T C40(0.98)  LDD1551  [4]
 LDCM0314  AC51 HEK-293T C40(1.11)  LDD1553  [4]
 LDCM0315  AC52 HEK-293T C40(1.04)  LDD1554  [4]
 LDCM0316  AC53 HEK-293T C40(1.04)  LDD1555  [4]
 LDCM0317  AC54 HEK-293T C40(1.04)  LDD1556  [4]
 LDCM0318  AC55 HEK-293T C40(0.98)  LDD1557  [4]
 LDCM0320  AC57 HEK-293T C40(1.04)  LDD1559  [4]
 LDCM0322  AC59 HEK-293T C40(0.99)  LDD1561  [4]
 LDCM0323  AC6 HEK-293T C40(1.13)  LDD1562  [4]
 LDCM0324  AC60 HEK-293T C40(1.09)  LDD1563  [4]
 LDCM0325  AC61 HEK-293T C40(1.01)  LDD1564  [4]
 LDCM0326  AC62 HEK-293T C40(1.05)  LDD1565  [4]
 LDCM0327  AC63 HEK-293T C40(0.99)  LDD1566  [4]
 LDCM0334  AC7 HEK-293T C40(0.97)  LDD1568  [4]
 LDCM0248  AKOS034007472 HEK-293T C40(1.03)  LDD1511  [4]
 LDCM0356  AKOS034007680 HEK-293T C40(1.09)  LDD1570  [4]
 LDCM0368  CL10 HEK-293T C40(2.98)  LDD1572  [4]
 LDCM0369  CL100 HEK-293T C40(1.43)  LDD1573  [4]
 LDCM0371  CL102 HEK-293T C40(1.38)  LDD1575  [4]
 LDCM0372  CL103 HEK-293T C40(1.04)  LDD1576  [4]
 LDCM0373  CL104 HEK-293T C40(1.19)  LDD1577  [4]
 LDCM0375  CL106 HEK-293T C40(1.25)  LDD1579  [4]
 LDCM0376  CL107 HEK-293T C40(1.00)  LDD1580  [4]
 LDCM0377  CL108 HEK-293T C40(1.21)  LDD1581  [4]
 LDCM0379  CL11 HEK-293T C40(1.58)  LDD1583  [4]
 LDCM0380  CL110 HEK-293T C40(1.52)  LDD1584  [4]
 LDCM0381  CL111 HEK-293T C40(1.32)  LDD1585  [4]
 LDCM0382  CL112 HEK-293T C40(1.53)  LDD1586  [4]
 LDCM0384  CL114 HEK-293T C40(1.52)  LDD1588  [4]
 LDCM0385  CL115 HEK-293T C40(1.21)  LDD1589  [4]
 LDCM0386  CL116 HEK-293T C40(1.11)  LDD1590  [4]
 LDCM0388  CL118 HEK-293T C40(1.02)  LDD1592  [4]
 LDCM0389  CL119 HEK-293T C40(1.02)  LDD1593  [4]
 LDCM0391  CL120 HEK-293T C40(1.13)  LDD1595  [4]
 LDCM0393  CL122 HEK-293T C40(0.96)  LDD1597  [4]
 LDCM0394  CL123 HEK-293T C40(1.39)  LDD1598  [4]
 LDCM0395  CL124 HEK-293T C40(1.31)  LDD1599  [4]
 LDCM0397  CL126 HEK-293T C40(0.97)  LDD1601  [4]
 LDCM0398  CL127 HEK-293T C40(1.14)  LDD1602  [4]
 LDCM0399  CL128 HEK-293T C40(1.08)  LDD1603  [4]
 LDCM0401  CL14 HEK-293T C40(1.16)  LDD1605  [4]
 LDCM0402  CL15 HEK-293T C40(1.62)  LDD1606  [4]
 LDCM0403  CL16 HEK-293T C40(1.29)  LDD1607  [4]
 LDCM0404  CL17 HEK-293T C40(2.38)  LDD1608  [4]
 LDCM0406  CL19 HEK-293T C40(1.05)  LDD1610  [4]
 LDCM0407  CL2 HEK-293T C40(1.29)  LDD1611  [4]
 LDCM0408  CL20 HEK-293T C40(1.19)  LDD1612  [4]
 LDCM0409  CL21 HEK-293T C40(3.30)  LDD1613  [4]
 LDCM0410  CL22 HEK-293T C40(1.26)  LDD1614  [4]
 LDCM0411  CL23 HEK-293T C40(1.03)  LDD1615  [4]
 LDCM0414  CL26 HEK-293T C40(0.96)  LDD1618  [4]
 LDCM0415  CL27 HEK-293T C40(1.03)  LDD1619  [4]
 LDCM0416  CL28 HEK-293T C40(1.60)  LDD1620  [4]
 LDCM0417  CL29 HEK-293T C40(1.06)  LDD1621  [4]
 LDCM0418  CL3 HEK-293T C40(1.18)  LDD1622  [4]
 LDCM0420  CL31 HEK-293T C40(1.35)  LDD1624  [4]
 LDCM0421  CL32 HEK-293T C40(1.12)  LDD1625  [4]
 LDCM0422  CL33 HEK-293T C40(3.01)  LDD1626  [4]
 LDCM0423  CL34 HEK-293T C40(1.56)  LDD1627  [4]
 LDCM0424  CL35 HEK-293T C40(1.06)  LDD1628  [4]
 LDCM0428  CL39 HEK-293T C40(1.45)  LDD1632  [4]
 LDCM0429  CL4 HEK-293T C40(1.30)  LDD1633  [4]
 LDCM0430  CL40 HEK-293T C40(1.13)  LDD1634  [4]
 LDCM0431  CL41 HEK-293T C40(2.09)  LDD1635  [4]
 LDCM0433  CL43 HEK-293T C40(1.14)  LDD1637  [4]
 LDCM0434  CL44 HEK-293T C40(1.04)  LDD1638  [4]
 LDCM0435  CL45 HEK-293T C40(2.42)  LDD1639  [4]
 LDCM0436  CL46 HEK-293T C40(1.23)  LDD1640  [4]
 LDCM0437  CL47 HEK-293T C40(1.11)  LDD1641  [4]
 LDCM0440  CL5 HEK-293T C40(1.10)  LDD1644  [4]
 LDCM0441  CL50 HEK-293T C40(1.41)  LDD1645  [4]
 LDCM0443  CL52 HEK-293T C40(1.22)  LDD1646  [4]
 LDCM0444  CL53 HEK-293T C40(2.53)  LDD1647  [4]
 LDCM0446  CL55 HEK-293T C40(1.17)  LDD1649  [4]
 LDCM0447  CL56 HEK-293T C40(1.45)  LDD1650  [4]
 LDCM0448  CL57 HEK-293T C40(2.65)  LDD1651  [4]
 LDCM0449  CL58 HEK-293T C40(1.76)  LDD1652  [4]
 LDCM0450  CL59 HEK-293T C40(1.02)  LDD1653  [4]
 LDCM0454  CL62 HEK-293T C40(1.08)  LDD1657  [4]
 LDCM0455  CL63 HEK-293T C40(1.13)  LDD1658  [4]
 LDCM0456  CL64 HEK-293T C40(1.57)  LDD1659  [4]
 LDCM0457  CL65 HEK-293T C40(1.08)  LDD1660  [4]
 LDCM0459  CL67 HEK-293T C40(1.05)  LDD1662  [4]
 LDCM0460  CL68 HEK-293T C40(1.32)  LDD1663  [4]
 LDCM0461  CL69 HEK-293T C40(1.38)  LDD1664  [4]
 LDCM0462  CL7 HEK-293T C40(1.13)  LDD1665  [4]
 LDCM0463  CL70 HEK-293T C40(1.05)  LDD1666  [4]
 LDCM0464  CL71 HEK-293T C40(1.23)  LDD1667  [4]
 LDCM0467  CL74 HEK-293T C40(1.01)  LDD1670  [4]
 LDCM0469  CL76 HEK-293T C40(1.08)  LDD1672  [4]
 LDCM0470  CL77 HEK-293T C40(2.22)  LDD1673  [4]
 LDCM0472  CL79 HEK-293T C40(1.04)  LDD1675  [4]
 LDCM0473  CL8 HEK-293T C40(2.51)  LDD1676  [4]
 LDCM0474  CL80 HEK-293T C40(1.11)  LDD1677  [4]
 LDCM0475  CL81 HEK-293T C40(1.08)  LDD1678  [4]
 LDCM0476  CL82 HEK-293T C40(1.02)  LDD1679  [4]
 LDCM0477  CL83 HEK-293T C40(1.00)  LDD1680  [4]
 LDCM0480  CL86 HEK-293T C40(1.07)  LDD1683  [4]
 LDCM0481  CL87 HEK-293T C40(1.23)  LDD1684  [4]
 LDCM0482  CL88 HEK-293T C40(1.16)  LDD1685  [4]
 LDCM0483  CL89 HEK-293T C40(1.09)  LDD1686  [4]
 LDCM0484  CL9 HEK-293T C40(1.33)  LDD1687  [4]
 LDCM0486  CL91 HEK-293T C40(1.11)  LDD1689  [4]
 LDCM0487  CL92 HEK-293T C40(1.46)  LDD1690  [4]
 LDCM0488  CL93 HEK-293T C40(1.40)  LDD1691  [4]
 LDCM0489  CL94 HEK-293T C40(1.62)  LDD1692  [4]
 LDCM0490  CL95 HEK-293T C40(2.72)  LDD1693  [4]
 LDCM0493  CL98 HEK-293T C40(1.23)  LDD1696  [4]
 LDCM0494  CL99 HEK-293T C40(1.53)  LDD1697  [4]
 LDCM0495  E2913 HEK-293T C40(1.55)  LDD1698  [4]
 LDCM0468  Fragment33 HEK-293T C40(1.17)  LDD1671  [4]
 LDCM0427  Fragment51 HEK-293T C40(1.00)  LDD1631  [4]
 LDCM0022  KB02 HCT 116 C130(2.03)  LDD0080  [2]
 LDCM0023  KB03 HCT 116 C130(1.79)  LDD0081  [2]
 LDCM0024  KB05 HCT 116 C130(1.67)  LDD0082  [2]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Other
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
CAP-Gly domain-containing linker protein 4 (CLIP4) . Q8N3C7

References

1 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
2 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
3 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
4 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402