Details of the Target
General Information of Target
| Target ID | LDTP08470 | |||||
|---|---|---|---|---|---|---|
| Target Name | DNA dC->dU-editing enzyme APOBEC-3F (APOBEC3F) | |||||
| Gene Name | APOBEC3F | |||||
| Gene ID | 200316 | |||||
| Synonyms |
DNA dC->dU-editing enzyme APOBEC-3F; EC 3.5.4.38; Apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3F; A3F |
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| 3D Structure | ||||||
| Sequence |
MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAA RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN FLFLDSKLQEILE |
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| Target Bioclass |
Enzyme
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| Family |
Cytidine and deoxycytidylate deaminase family
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| Subcellular location |
Cytoplasm
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| Function |
DNA deaminase (cytidine deaminase) which acts as an inhibitor of retrovirus replication and retrotransposon mobility via deaminase-dependent and -independent mechanisms. Exhibits antiviral activity against viruse such as HIV-1 or HIV-2. After the penetration of retroviral nucleocapsids into target cells of infection and the initiation of reverse transcription, it can induce the conversion of cytosine to uracil in the minus-sense single-strand viral DNA, leading to G-to-A hypermutations in the subsequent plus-strand viral DNA. The resultant detrimental levels of mutations in the proviral genome, along with a deamination-independent mechanism that works prior to the proviral integration, together exert efficient antiretroviral effects in infected target cells. Selectively targets single-stranded DNA and does not deaminate double-stranded DNA or single- or double-stranded RNA. Exhibits antiviral activity also against hepatitis B virus (HBV), equine infectious anemia virus (EIAV), xenotropic MuLV-related virus (XMRV) and simian foamy virus (SFV) and may inhibit the mobility of LTR and non-LTR retrotransposons. May also play a role in the epigenetic regulation of gene expression through the process of active DNA demethylation.
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| Uniprot ID | ||||||
| Ensemble ID | ||||||
| HGNC ID | ||||||
| ChEMBL ID | ||||||
Target Site Mutations in Different Cell Lines
| Cell line | Mutation details | Probe for labeling this protein in this cell | |||
|---|---|---|---|---|---|
| HT115 | SNV: p.L71F | . | |||
| HT1376 | SNV: p.E282Q | DBIA Probe Info | |||
| JURKAT | SNV: p.P350S | . | |||
| KYSE410 | SNV: p.R131P | DBIA Probe Info | |||
| OCIAML2 | SNV: p.N31D | DBIA Probe Info | |||
| SNGM | SNV: p.H203R | DBIA Probe Info | |||
Probe(s) Labeling This Target
ABPP Probe
| Probe name | Structure | Binding Site(Ratio) | Interaction ID | Ref | |
|---|---|---|---|---|---|
|
DBIA Probe Info |
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C261(1.26) | LDD3315 | [1] | |
|
IPM Probe Info |
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N.A. | LDD2156 | [2] | |
Competitor(s) Related to This Target
| Competitor ID | Name | Cell line | Binding Site(Ratio) | Interaction ID | Ref |
|---|---|---|---|---|---|
| LDCM0215 | AC10 | HEK-293T | C248(1.07) | LDD1508 | [3] |
| LDCM0259 | AC14 | HEK-293T | C248(0.89) | LDD1512 | [3] |
| LDCM0270 | AC15 | HEK-293T | C248(1.22) | LDD1513 | [3] |
| LDCM0277 | AC18 | HEK-293T | C248(1.04) | LDD1516 | [3] |
| LDCM0279 | AC2 | HEK-293T | C248(1.07) | LDD1518 | [3] |
| LDCM0281 | AC21 | HEK-293T | C248(0.94) | LDD1520 | [3] |
| LDCM0282 | AC22 | HEK-293T | C248(0.92) | LDD1521 | [3] |
| LDCM0283 | AC23 | HEK-293T | C248(1.11) | LDD1522 | [3] |
| LDCM0284 | AC24 | HEK-293T | C248(0.70) | LDD1523 | [3] |
| LDCM0286 | AC26 | HEK-293T | C248(1.02) | LDD1525 | [3] |
| LDCM0289 | AC29 | HEK-293T | C248(1.01) | LDD1528 | [3] |
| LDCM0291 | AC30 | HEK-293T | C248(0.85) | LDD1530 | [3] |
| LDCM0292 | AC31 | HEK-293T | C248(1.06) | LDD1531 | [3] |
| LDCM0293 | AC32 | HEK-293T | C248(0.93) | LDD1532 | [3] |
| LDCM0295 | AC34 | HEK-293T | C248(1.03) | LDD1534 | [3] |
| LDCM0298 | AC37 | HEK-293T | C248(1.03) | LDD1537 | [3] |
| LDCM0299 | AC38 | HEK-293T | C248(0.91) | LDD1538 | [3] |
| LDCM0300 | AC39 | HEK-293T | C248(1.06) | LDD1539 | [3] |
| LDCM0302 | AC40 | HEK-293T | C248(0.77) | LDD1541 | [3] |
| LDCM0304 | AC42 | HEK-293T | C248(0.97) | LDD1543 | [3] |
| LDCM0307 | AC45 | HEK-293T | C248(1.02) | LDD1546 | [3] |
| LDCM0308 | AC46 | HEK-293T | C248(0.94) | LDD1547 | [3] |
| LDCM0309 | AC47 | HEK-293T | C248(1.18) | LDD1548 | [3] |
| LDCM0310 | AC48 | HEK-293T | C248(0.78) | LDD1549 | [3] |
| LDCM0312 | AC5 | HEK-293T | C248(0.91) | LDD1551 | [3] |
| LDCM0313 | AC50 | HEK-293T | C248(1.00) | LDD1552 | [3] |
| LDCM0316 | AC53 | HEK-293T | C248(0.81) | LDD1555 | [3] |
| LDCM0317 | AC54 | HEK-293T | C248(0.83) | LDD1556 | [3] |
| LDCM0318 | AC55 | HEK-293T | C248(0.99) | LDD1557 | [3] |
| LDCM0319 | AC56 | HEK-293T | C248(1.10) | LDD1558 | [3] |
| LDCM0321 | AC58 | HEK-293T | C248(0.96) | LDD1560 | [3] |
| LDCM0323 | AC6 | HEK-293T | C248(0.87) | LDD1562 | [3] |
| LDCM0325 | AC61 | HEK-293T | C248(0.96) | LDD1564 | [3] |
| LDCM0326 | AC62 | HEK-293T | C248(0.96) | LDD1565 | [3] |
| LDCM0327 | AC63 | HEK-293T | C248(1.08) | LDD1566 | [3] |
| LDCM0328 | AC64 | HEK-293T | C248(0.80) | LDD1567 | [3] |
| LDCM0334 | AC7 | HEK-293T | C248(0.93) | LDD1568 | [3] |
| LDCM0345 | AC8 | HEK-293T | C248(0.79) | LDD1569 | [3] |
| LDCM0248 | AKOS034007472 | HEK-293T | C248(0.91) | LDD1511 | [3] |
| LDCM0275 | AKOS034007705 | HEK-293T | C248(1.00) | LDD1514 | [3] |
| LDCM0367 | CL1 | HEK-293T | C248(1.10) | LDD1571 | [3] |
| LDCM0368 | CL10 | HEK-293T | C248(0.78) | LDD1572 | [3] |
| LDCM0369 | CL100 | HEK-293T | C339(1.21) | LDD1573 | [3] |
| LDCM0370 | CL101 | HEK-293T | C248(1.15) | LDD1574 | [3] |
| LDCM0372 | CL103 | HEK-293T | C248(1.10) | LDD1576 | [3] |
| LDCM0373 | CL104 | HEK-293T | C339(0.94) | LDD1577 | [3] |
| LDCM0374 | CL105 | HEK-293T | C248(1.24) | LDD1578 | [3] |
| LDCM0376 | CL107 | HEK-293T | C248(1.11) | LDD1580 | [3] |
| LDCM0377 | CL108 | HEK-293T | C339(1.35) | LDD1581 | [3] |
| LDCM0378 | CL109 | HEK-293T | C248(1.16) | LDD1582 | [3] |
| LDCM0379 | CL11 | HEK-293T | C248(0.67) | LDD1583 | [3] |
| LDCM0381 | CL111 | HEK-293T | C248(0.89) | LDD1585 | [3] |
| LDCM0382 | CL112 | HEK-293T | C339(1.10) | LDD1586 | [3] |
| LDCM0383 | CL113 | HEK-293T | C248(1.14) | LDD1587 | [3] |
| LDCM0385 | CL115 | HEK-293T | C248(1.00) | LDD1589 | [3] |
| LDCM0386 | CL116 | HEK-293T | C339(0.85) | LDD1590 | [3] |
| LDCM0387 | CL117 | HEK-293T | C248(1.23) | LDD1591 | [3] |
| LDCM0389 | CL119 | HEK-293T | C248(1.01) | LDD1593 | [3] |
| LDCM0390 | CL12 | HEK-293T | C248(0.87) | LDD1594 | [3] |
| LDCM0391 | CL120 | HEK-293T | C339(1.04) | LDD1595 | [3] |
| LDCM0392 | CL121 | HEK-293T | C248(1.20) | LDD1596 | [3] |
| LDCM0394 | CL123 | HEK-293T | C248(1.14) | LDD1598 | [3] |
| LDCM0395 | CL124 | HEK-293T | C339(1.03) | LDD1599 | [3] |
| LDCM0396 | CL125 | HEK-293T | C248(1.16) | LDD1600 | [3] |
| LDCM0398 | CL127 | HEK-293T | C248(0.89) | LDD1602 | [3] |
| LDCM0399 | CL128 | HEK-293T | C339(1.01) | LDD1603 | [3] |
| LDCM0400 | CL13 | HEK-293T | C248(1.26) | LDD1604 | [3] |
| LDCM0402 | CL15 | HEK-293T | C248(0.94) | LDD1606 | [3] |
| LDCM0403 | CL16 | HEK-293T | C339(0.88) | LDD1607 | [3] |
| LDCM0405 | CL18 | HEK-293T | C248(1.10) | LDD1609 | [3] |
| LDCM0409 | CL21 | HEK-293T | C248(0.76) | LDD1613 | [3] |
| LDCM0410 | CL22 | HEK-293T | C248(0.78) | LDD1614 | [3] |
| LDCM0411 | CL23 | HEK-293T | C248(0.61) | LDD1615 | [3] |
| LDCM0412 | CL24 | HEK-293T | C248(0.85) | LDD1616 | [3] |
| LDCM0413 | CL25 | HEK-293T | C248(1.25) | LDD1617 | [3] |
| LDCM0415 | CL27 | HEK-293T | C248(1.08) | LDD1619 | [3] |
| LDCM0416 | CL28 | HEK-293T | C339(1.18) | LDD1620 | [3] |
| LDCM0418 | CL3 | HEK-293T | C248(1.06) | LDD1622 | [3] |
| LDCM0419 | CL30 | HEK-293T | C248(1.10) | LDD1623 | [3] |
| LDCM0422 | CL33 | HEK-293T | C248(0.86) | LDD1626 | [3] |
| LDCM0423 | CL34 | HEK-293T | C248(0.84) | LDD1627 | [3] |
| LDCM0424 | CL35 | HEK-293T | C248(0.61) | LDD1628 | [3] |
| LDCM0425 | CL36 | HEK-293T | C248(0.80) | LDD1629 | [3] |
| LDCM0426 | CL37 | HEK-293T | C248(1.27) | LDD1630 | [3] |
| LDCM0428 | CL39 | HEK-293T | C248(0.93) | LDD1632 | [3] |
| LDCM0429 | CL4 | HEK-293T | C339(0.79) | LDD1633 | [3] |
| LDCM0430 | CL40 | HEK-293T | C339(0.79) | LDD1634 | [3] |
| LDCM0432 | CL42 | HEK-293T | C248(1.00) | LDD1636 | [3] |
| LDCM0435 | CL45 | HEK-293T | C248(0.99) | LDD1639 | [3] |
| LDCM0436 | CL46 | HEK-293T | C248(1.01) | LDD1640 | [3] |
| LDCM0437 | CL47 | HEK-293T | C248(0.59) | LDD1641 | [3] |
| LDCM0438 | CL48 | HEK-293T | C248(0.85) | LDD1642 | [3] |
| LDCM0439 | CL49 | HEK-293T | C248(1.27) | LDD1643 | [3] |
| LDCM0443 | CL52 | HEK-293T | C339(1.02) | LDD1646 | [3] |
| LDCM0445 | CL54 | HEK-293T | C248(0.95) | LDD1648 | [3] |
| LDCM0448 | CL57 | HEK-293T | C248(1.10) | LDD1651 | [3] |
| LDCM0449 | CL58 | HEK-293T | C248(0.97) | LDD1652 | [3] |
| LDCM0450 | CL59 | HEK-293T | C248(0.55) | LDD1653 | [3] |
| LDCM0451 | CL6 | HEK-293T | C248(0.86) | LDD1654 | [3] |
| LDCM0452 | CL60 | HEK-293T | C248(0.96) | LDD1655 | [3] |
| LDCM0453 | CL61 | HEK-293T | C248(1.31) | LDD1656 | [3] |
| LDCM0455 | CL63 | HEK-293T | C248(1.24) | LDD1658 | [3] |
| LDCM0456 | CL64 | HEK-293T | C339(0.91) | LDD1659 | [3] |
| LDCM0458 | CL66 | HEK-293T | C248(1.01) | LDD1661 | [3] |
| LDCM0461 | CL69 | HEK-293T | C248(0.87) | LDD1664 | [3] |
| LDCM0463 | CL70 | HEK-293T | C248(0.95) | LDD1666 | [3] |
| LDCM0464 | CL71 | HEK-293T | C248(0.68) | LDD1667 | [3] |
| LDCM0465 | CL72 | HEK-293T | C248(0.79) | LDD1668 | [3] |
| LDCM0466 | CL73 | HEK-293T | C248(1.21) | LDD1669 | [3] |
| LDCM0469 | CL76 | HEK-293T | C339(1.27) | LDD1672 | [3] |
| LDCM0471 | CL78 | HEK-293T | C248(1.13) | LDD1674 | [3] |
| LDCM0475 | CL81 | HEK-293T | C248(0.86) | LDD1678 | [3] |
| LDCM0476 | CL82 | HEK-293T | C248(0.97) | LDD1679 | [3] |
| LDCM0477 | CL83 | HEK-293T | C248(0.81) | LDD1680 | [3] |
| LDCM0478 | CL84 | HEK-293T | C248(0.72) | LDD1681 | [3] |
| LDCM0479 | CL85 | HEK-293T | C248(1.44) | LDD1682 | [3] |
| LDCM0481 | CL87 | HEK-293T | C248(0.92) | LDD1684 | [3] |
| LDCM0482 | CL88 | HEK-293T | C339(0.86) | LDD1685 | [3] |
| LDCM0484 | CL9 | HEK-293T | C248(0.82) | LDD1687 | [3] |
| LDCM0485 | CL90 | HEK-293T | C248(0.92) | LDD1688 | [3] |
| LDCM0488 | CL93 | HEK-293T | C248(0.90) | LDD1691 | [3] |
| LDCM0489 | CL94 | HEK-293T | C248(1.02) | LDD1692 | [3] |
| LDCM0490 | CL95 | HEK-293T | C248(0.88) | LDD1693 | [3] |
| LDCM0491 | CL96 | HEK-293T | C248(1.09) | LDD1694 | [3] |
| LDCM0492 | CL97 | HEK-293T | C248(1.12) | LDD1695 | [3] |
| LDCM0494 | CL99 | HEK-293T | C248(1.03) | LDD1697 | [3] |
| LDCM0495 | E2913 | HEK-293T | C248(1.01) | LDD1698 | [3] |
| LDCM0468 | Fragment33 | HEK-293T | C248(0.97) | LDD1671 | [3] |
| LDCM0022 | KB02 | 697 | C261(1.62) | LDD2245 | [1] |
| LDCM0023 | KB03 | 697 | C261(1.00) | LDD2662 | [1] |
| LDCM0024 | KB05 | IGR39 | C261(1.26) | LDD3315 | [1] |
The Interaction Atlas With This Target
References


