General Information of Target

Target ID LDTP08470
Target Name DNA dC->dU-editing enzyme APOBEC-3F (APOBEC3F)
Gene Name APOBEC3F
Gene ID 200316
Synonyms
DNA dC->dU-editing enzyme APOBEC-3F; EC 3.5.4.38; Apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3F; A3F
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAA
RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL
HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN
QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT
IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN
FLFLDSKLQEILE
Target Bioclass
Enzyme
Family
Cytidine and deoxycytidylate deaminase family
Subcellular location
Cytoplasm
Function
DNA deaminase (cytidine deaminase) which acts as an inhibitor of retrovirus replication and retrotransposon mobility via deaminase-dependent and -independent mechanisms. Exhibits antiviral activity against viruse such as HIV-1 or HIV-2. After the penetration of retroviral nucleocapsids into target cells of infection and the initiation of reverse transcription, it can induce the conversion of cytosine to uracil in the minus-sense single-strand viral DNA, leading to G-to-A hypermutations in the subsequent plus-strand viral DNA. The resultant detrimental levels of mutations in the proviral genome, along with a deamination-independent mechanism that works prior to the proviral integration, together exert efficient antiretroviral effects in infected target cells. Selectively targets single-stranded DNA and does not deaminate double-stranded DNA or single- or double-stranded RNA. Exhibits antiviral activity also against hepatitis B virus (HBV), equine infectious anemia virus (EIAV), xenotropic MuLV-related virus (XMRV) and simian foamy virus (SFV) and may inhibit the mobility of LTR and non-LTR retrotransposons. May also play a role in the epigenetic regulation of gene expression through the process of active DNA demethylation.
Uniprot ID
Q8IUX4
Ensemble ID
ENST00000308521.10
HGNC ID
HGNC:17356
ChEMBL ID
CHEMBL2007626

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
HT115 SNV: p.L71F .
HT1376 SNV: p.E282Q DBIA    Probe Info 
JURKAT SNV: p.P350S .
KYSE410 SNV: p.R131P DBIA    Probe Info 
OCIAML2 SNV: p.N31D DBIA    Probe Info 
SNGM SNV: p.H203R DBIA    Probe Info 

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 2 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C261(1.26)  LDD3315  [1]
IPM
 Probe Info 
N.A.  LDD2156  [2]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0215  AC10 HEK-293T C248(1.07)  LDD1508  [3]
 LDCM0259  AC14 HEK-293T C248(0.89)  LDD1512  [3]
 LDCM0270  AC15 HEK-293T C248(1.22)  LDD1513  [3]
 LDCM0277  AC18 HEK-293T C248(1.04)  LDD1516  [3]
 LDCM0279  AC2 HEK-293T C248(1.07)  LDD1518  [3]
 LDCM0281  AC21 HEK-293T C248(0.94)  LDD1520  [3]
 LDCM0282  AC22 HEK-293T C248(0.92)  LDD1521  [3]
 LDCM0283  AC23 HEK-293T C248(1.11)  LDD1522  [3]
 LDCM0284  AC24 HEK-293T C248(0.70)  LDD1523  [3]
 LDCM0286  AC26 HEK-293T C248(1.02)  LDD1525  [3]
 LDCM0289  AC29 HEK-293T C248(1.01)  LDD1528  [3]
 LDCM0291  AC30 HEK-293T C248(0.85)  LDD1530  [3]
 LDCM0292  AC31 HEK-293T C248(1.06)  LDD1531  [3]
 LDCM0293  AC32 HEK-293T C248(0.93)  LDD1532  [3]
 LDCM0295  AC34 HEK-293T C248(1.03)  LDD1534  [3]
 LDCM0298  AC37 HEK-293T C248(1.03)  LDD1537  [3]
 LDCM0299  AC38 HEK-293T C248(0.91)  LDD1538  [3]
 LDCM0300  AC39 HEK-293T C248(1.06)  LDD1539  [3]
 LDCM0302  AC40 HEK-293T C248(0.77)  LDD1541  [3]
 LDCM0304  AC42 HEK-293T C248(0.97)  LDD1543  [3]
 LDCM0307  AC45 HEK-293T C248(1.02)  LDD1546  [3]
 LDCM0308  AC46 HEK-293T C248(0.94)  LDD1547  [3]
 LDCM0309  AC47 HEK-293T C248(1.18)  LDD1548  [3]
 LDCM0310  AC48 HEK-293T C248(0.78)  LDD1549  [3]
 LDCM0312  AC5 HEK-293T C248(0.91)  LDD1551  [3]
 LDCM0313  AC50 HEK-293T C248(1.00)  LDD1552  [3]
 LDCM0316  AC53 HEK-293T C248(0.81)  LDD1555  [3]
 LDCM0317  AC54 HEK-293T C248(0.83)  LDD1556  [3]
 LDCM0318  AC55 HEK-293T C248(0.99)  LDD1557  [3]
 LDCM0319  AC56 HEK-293T C248(1.10)  LDD1558  [3]
 LDCM0321  AC58 HEK-293T C248(0.96)  LDD1560  [3]
 LDCM0323  AC6 HEK-293T C248(0.87)  LDD1562  [3]
 LDCM0325  AC61 HEK-293T C248(0.96)  LDD1564  [3]
 LDCM0326  AC62 HEK-293T C248(0.96)  LDD1565  [3]
 LDCM0327  AC63 HEK-293T C248(1.08)  LDD1566  [3]
 LDCM0328  AC64 HEK-293T C248(0.80)  LDD1567  [3]
 LDCM0334  AC7 HEK-293T C248(0.93)  LDD1568  [3]
 LDCM0345  AC8 HEK-293T C248(0.79)  LDD1569  [3]
 LDCM0248  AKOS034007472 HEK-293T C248(0.91)  LDD1511  [3]
 LDCM0275  AKOS034007705 HEK-293T C248(1.00)  LDD1514  [3]
 LDCM0367  CL1 HEK-293T C248(1.10)  LDD1571  [3]
 LDCM0368  CL10 HEK-293T C248(0.78)  LDD1572  [3]
 LDCM0369  CL100 HEK-293T C339(1.21)  LDD1573  [3]
 LDCM0370  CL101 HEK-293T C248(1.15)  LDD1574  [3]
 LDCM0372  CL103 HEK-293T C248(1.10)  LDD1576  [3]
 LDCM0373  CL104 HEK-293T C339(0.94)  LDD1577  [3]
 LDCM0374  CL105 HEK-293T C248(1.24)  LDD1578  [3]
 LDCM0376  CL107 HEK-293T C248(1.11)  LDD1580  [3]
 LDCM0377  CL108 HEK-293T C339(1.35)  LDD1581  [3]
 LDCM0378  CL109 HEK-293T C248(1.16)  LDD1582  [3]
 LDCM0379  CL11 HEK-293T C248(0.67)  LDD1583  [3]
 LDCM0381  CL111 HEK-293T C248(0.89)  LDD1585  [3]
 LDCM0382  CL112 HEK-293T C339(1.10)  LDD1586  [3]
 LDCM0383  CL113 HEK-293T C248(1.14)  LDD1587  [3]
 LDCM0385  CL115 HEK-293T C248(1.00)  LDD1589  [3]
 LDCM0386  CL116 HEK-293T C339(0.85)  LDD1590  [3]
 LDCM0387  CL117 HEK-293T C248(1.23)  LDD1591  [3]
 LDCM0389  CL119 HEK-293T C248(1.01)  LDD1593  [3]
 LDCM0390  CL12 HEK-293T C248(0.87)  LDD1594  [3]
 LDCM0391  CL120 HEK-293T C339(1.04)  LDD1595  [3]
 LDCM0392  CL121 HEK-293T C248(1.20)  LDD1596  [3]
 LDCM0394  CL123 HEK-293T C248(1.14)  LDD1598  [3]
 LDCM0395  CL124 HEK-293T C339(1.03)  LDD1599  [3]
 LDCM0396  CL125 HEK-293T C248(1.16)  LDD1600  [3]
 LDCM0398  CL127 HEK-293T C248(0.89)  LDD1602  [3]
 LDCM0399  CL128 HEK-293T C339(1.01)  LDD1603  [3]
 LDCM0400  CL13 HEK-293T C248(1.26)  LDD1604  [3]
 LDCM0402  CL15 HEK-293T C248(0.94)  LDD1606  [3]
 LDCM0403  CL16 HEK-293T C339(0.88)  LDD1607  [3]
 LDCM0405  CL18 HEK-293T C248(1.10)  LDD1609  [3]
 LDCM0409  CL21 HEK-293T C248(0.76)  LDD1613  [3]
 LDCM0410  CL22 HEK-293T C248(0.78)  LDD1614  [3]
 LDCM0411  CL23 HEK-293T C248(0.61)  LDD1615  [3]
 LDCM0412  CL24 HEK-293T C248(0.85)  LDD1616  [3]
 LDCM0413  CL25 HEK-293T C248(1.25)  LDD1617  [3]
 LDCM0415  CL27 HEK-293T C248(1.08)  LDD1619  [3]
 LDCM0416  CL28 HEK-293T C339(1.18)  LDD1620  [3]
 LDCM0418  CL3 HEK-293T C248(1.06)  LDD1622  [3]
 LDCM0419  CL30 HEK-293T C248(1.10)  LDD1623  [3]
 LDCM0422  CL33 HEK-293T C248(0.86)  LDD1626  [3]
 LDCM0423  CL34 HEK-293T C248(0.84)  LDD1627  [3]
 LDCM0424  CL35 HEK-293T C248(0.61)  LDD1628  [3]
 LDCM0425  CL36 HEK-293T C248(0.80)  LDD1629  [3]
 LDCM0426  CL37 HEK-293T C248(1.27)  LDD1630  [3]
 LDCM0428  CL39 HEK-293T C248(0.93)  LDD1632  [3]
 LDCM0429  CL4 HEK-293T C339(0.79)  LDD1633  [3]
 LDCM0430  CL40 HEK-293T C339(0.79)  LDD1634  [3]
 LDCM0432  CL42 HEK-293T C248(1.00)  LDD1636  [3]
 LDCM0435  CL45 HEK-293T C248(0.99)  LDD1639  [3]
 LDCM0436  CL46 HEK-293T C248(1.01)  LDD1640  [3]
 LDCM0437  CL47 HEK-293T C248(0.59)  LDD1641  [3]
 LDCM0438  CL48 HEK-293T C248(0.85)  LDD1642  [3]
 LDCM0439  CL49 HEK-293T C248(1.27)  LDD1643  [3]
 LDCM0443  CL52 HEK-293T C339(1.02)  LDD1646  [3]
 LDCM0445  CL54 HEK-293T C248(0.95)  LDD1648  [3]
 LDCM0448  CL57 HEK-293T C248(1.10)  LDD1651  [3]
 LDCM0449  CL58 HEK-293T C248(0.97)  LDD1652  [3]
 LDCM0450  CL59 HEK-293T C248(0.55)  LDD1653  [3]
 LDCM0451  CL6 HEK-293T C248(0.86)  LDD1654  [3]
 LDCM0452  CL60 HEK-293T C248(0.96)  LDD1655  [3]
 LDCM0453  CL61 HEK-293T C248(1.31)  LDD1656  [3]
 LDCM0455  CL63 HEK-293T C248(1.24)  LDD1658  [3]
 LDCM0456  CL64 HEK-293T C339(0.91)  LDD1659  [3]
 LDCM0458  CL66 HEK-293T C248(1.01)  LDD1661  [3]
 LDCM0461  CL69 HEK-293T C248(0.87)  LDD1664  [3]
 LDCM0463  CL70 HEK-293T C248(0.95)  LDD1666  [3]
 LDCM0464  CL71 HEK-293T C248(0.68)  LDD1667  [3]
 LDCM0465  CL72 HEK-293T C248(0.79)  LDD1668  [3]
 LDCM0466  CL73 HEK-293T C248(1.21)  LDD1669  [3]
 LDCM0469  CL76 HEK-293T C339(1.27)  LDD1672  [3]
 LDCM0471  CL78 HEK-293T C248(1.13)  LDD1674  [3]
 LDCM0475  CL81 HEK-293T C248(0.86)  LDD1678  [3]
 LDCM0476  CL82 HEK-293T C248(0.97)  LDD1679  [3]
 LDCM0477  CL83 HEK-293T C248(0.81)  LDD1680  [3]
 LDCM0478  CL84 HEK-293T C248(0.72)  LDD1681  [3]
 LDCM0479  CL85 HEK-293T C248(1.44)  LDD1682  [3]
 LDCM0481  CL87 HEK-293T C248(0.92)  LDD1684  [3]
 LDCM0482  CL88 HEK-293T C339(0.86)  LDD1685  [3]
 LDCM0484  CL9 HEK-293T C248(0.82)  LDD1687  [3]
 LDCM0485  CL90 HEK-293T C248(0.92)  LDD1688  [3]
 LDCM0488  CL93 HEK-293T C248(0.90)  LDD1691  [3]
 LDCM0489  CL94 HEK-293T C248(1.02)  LDD1692  [3]
 LDCM0490  CL95 HEK-293T C248(0.88)  LDD1693  [3]
 LDCM0491  CL96 HEK-293T C248(1.09)  LDD1694  [3]
 LDCM0492  CL97 HEK-293T C248(1.12)  LDD1695  [3]
 LDCM0494  CL99 HEK-293T C248(1.03)  LDD1697  [3]
 LDCM0495  E2913 HEK-293T C248(1.01)  LDD1698  [3]
 LDCM0468  Fragment33 HEK-293T C248(0.97)  LDD1671  [3]
 LDCM0022  KB02 697 C261(1.62)  LDD2245  [1]
 LDCM0023  KB03 697 C261(1.00)  LDD2662  [1]
 LDCM0024  KB05 IGR39 C261(1.26)  LDD3315  [1]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
DNA dC->dU-editing enzyme APOBEC-3F (APOBEC3F) Cytidine and deoxycytidylate deaminase family Q8IUX4

References

1 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
2 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
3 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402