General Information of Target

Target ID LDTP05149
Target Name Double-stranded RNA-specific editase 1 (ADARB1)
Gene Name ADARB1
Gene ID 104
Synonyms
ADAR2; DRADA2; RED1; Double-stranded RNA-specific editase 1; EC 3.5.4.37; RNA-editing deaminase 1; RNA-editing enzyme 1; dsRNA adenosine deaminase
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MDIEDEENMSSSSTDVKENRNLDNVSPKDGSTPGPGEGSQLSNGGGGGPGRKRPLEEGSN
GHSKYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQVF
EGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGF
ETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPPFPPPSGKNPVMIL
NELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLH
LDQTPSRQPIPSEGLQLHLPQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTG
TDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDD
QKRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEGSRSYTQAGVQWCNH
GSLQPRPPGLLSDPSTSTFQGAGTTEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQ
TWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAM
YQRISNIEDLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDSAIEVINATTGKDE
LGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFI
KAGLGAWVEKPTEQDQFSLTP
Target Bioclass
Enzyme
Subcellular location
Nucleus
Function
Catalyzes the hydrolytic deamination of adenosine to inosine in double-stranded RNA (dsRNA) referred to as A-to-I RNA editing. This may affect gene expression and function in a number of ways that include mRNA translation by changing codons and hence the amino acid sequence of proteins; pre-mRNA splicing by altering splice site recognition sequences; RNA stability by changing sequences involved in nuclease recognition; genetic stability in the case of RNA virus genomes by changing sequences during viral RNA replication; and RNA structure-dependent activities such as microRNA production or targeting or protein-RNA interactions. Can edit both viral and cellular RNAs and can edit RNAs at multiple sites (hyper-editing) or at specific sites (site-specific editing). Its cellular RNA substrates include: bladder cancer-associated protein (BLCAP), neurotransmitter receptors for glutamate (GRIA2 and GRIK2) and serotonin (HTR2C), GABA receptor (GABRA3) and potassium voltage-gated channel (KCNA1). Site-specific RNA editing of transcripts encoding these proteins results in amino acid substitutions which consequently alter their functional activities. Edits GRIA2 at both the Q/R and R/G sites efficiently but converts the adenosine in hotspot1 much less efficiently. Can exert a proviral effect towards human immunodeficiency virus type 1 (HIV-1) and enhances its replication via both an editing-dependent and editing-independent mechanism. The former involves editing of adenosines in the 5'UTR while the latter occurs via suppression of EIF2AK2/PKR activation and function. Can inhibit cell proliferation and migration and can stimulate exocytosis.; [Isoform 1]: Has a lower catalytic activity than isoform 2.; [Isoform 2]: Has a higher catalytic activity than isoform 1.
Uniprot ID
P78563
Ensemble ID
ENST00000348831.9
HGNC ID
HGNC:226

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 9 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C991(2.53)  LDD3310  [1]
BTD
 Probe Info 
C556(0.53)  LDD2134  [2]
AHL-Pu-1
 Probe Info 
C674(4.08)  LDD0169  [3]
IA-alkyne
 Probe Info 
C674(3.33)  LDD0372  [3]
4-Iodoacetamidophenylacetylene
 Probe Info 
N.A.  LDD0038  [4]
Lodoacetamide azide
 Probe Info 
N.A.  LDD0037  [4]
IPM
 Probe Info 
N.A.  LDD0147  [5]
TFBX
 Probe Info 
N.A.  LDD0148  [5]
Acrolein
 Probe Info 
N.A.  LDD0217  [6]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0026  4SU-RNA+native RNA HEK-293T C674(4.08)  LDD0169  [3]
 LDCM0216  AC100 HEK-293T C377(1.07)  LDD0814  [7]
 LDCM0217  AC101 HEK-293T C377(1.11)  LDD0815  [7]
 LDCM0218  AC102 HEK-293T C377(1.03)  LDD0816  [7]
 LDCM0219  AC103 HEK-293T C377(1.02)  LDD0817  [7]
 LDCM0220  AC104 HEK-293T C377(1.01)  LDD0818  [7]
 LDCM0221  AC105 HEK-293T C377(0.78)  LDD0819  [7]
 LDCM0222  AC106 HEK-293T C377(0.80)  LDD0820  [7]
 LDCM0223  AC107 HEK-293T C377(0.88)  LDD0821  [7]
 LDCM0224  AC108 HEK-293T C377(0.83)  LDD0822  [7]
 LDCM0225  AC109 HEK-293T C377(0.91)  LDD0823  [7]
 LDCM0227  AC110 HEK-293T C377(1.17)  LDD0825  [7]
 LDCM0228  AC111 HEK-293T C377(1.15)  LDD0826  [7]
 LDCM0229  AC112 HEK-293T C377(1.22)  LDD0827  [7]
 LDCM0230  AC113 HEK-293T C377(1.09)  LDD0828  [7]
 LDCM0231  AC114 HEK-293T C377(1.04)  LDD0829  [7]
 LDCM0232  AC115 HEK-293T C377(1.10)  LDD0830  [7]
 LDCM0233  AC116 HEK-293T C377(1.16)  LDD0831  [7]
 LDCM0234  AC117 HEK-293T C377(1.19)  LDD0832  [7]
 LDCM0235  AC118 HEK-293T C377(1.40)  LDD0833  [7]
 LDCM0236  AC119 HEK-293T C377(1.29)  LDD0834  [7]
 LDCM0238  AC120 HEK-293T C377(1.25)  LDD0836  [7]
 LDCM0239  AC121 HEK-293T C377(1.26)  LDD0837  [7]
 LDCM0240  AC122 HEK-293T C377(1.28)  LDD0838  [7]
 LDCM0241  AC123 HEK-293T C377(1.47)  LDD0839  [7]
 LDCM0242  AC124 HEK-293T C377(1.39)  LDD0840  [7]
 LDCM0243  AC125 HEK-293T C377(1.25)  LDD0841  [7]
 LDCM0244  AC126 HEK-293T C377(1.74)  LDD0842  [7]
 LDCM0245  AC127 HEK-293T C377(1.47)  LDD0843  [7]
 LDCM0285  AC25 HEK-293T C377(1.00)  LDD0883  [7]
 LDCM0286  AC26 HEK-293T C377(0.98)  LDD0884  [7]
 LDCM0287  AC27 HEK-293T C377(1.06)  LDD0885  [7]
 LDCM0288  AC28 HEK-293T C377(3.06)  LDD0886  [7]
 LDCM0289  AC29 HEK-293T C377(0.99)  LDD0887  [7]
 LDCM0291  AC30 HEK-293T C377(0.99)  LDD0889  [7]
 LDCM0292  AC31 HEK-293T C377(0.98)  LDD0890  [7]
 LDCM0293  AC32 HEK-293T C377(0.90)  LDD0891  [7]
 LDCM0294  AC33 HEK-293T C377(1.09)  LDD0892  [7]
 LDCM0295  AC34 HEK-293T C377(1.05)  LDD0893  [7]
 LDCM0365  AC98 HEK-293T C377(0.95)  LDD0963  [7]
 LDCM0366  AC99 HEK-293T C377(0.82)  LDD0964  [7]
 LDCM0108  Chloroacetamide HeLa C556(0.00); C393(0.00)  LDD0222  [6]
 LDCM0372  CL103 HEK-293T C478(1.20)  LDD1576  [8]
 LDCM0376  CL107 HEK-293T C478(0.92)  LDD1580  [8]
 LDCM0381  CL111 HEK-293T C478(0.98)  LDD1585  [8]
 LDCM0382  CL112 HEK-293T C377(0.96)  LDD0980  [7]
 LDCM0383  CL113 HEK-293T C377(0.89)  LDD0981  [7]
 LDCM0384  CL114 HEK-293T C377(1.60)  LDD0982  [7]
 LDCM0385  CL115 HEK-293T C377(1.29)  LDD0983  [7]
 LDCM0386  CL116 HEK-293T C377(1.33)  LDD0984  [7]
 LDCM0389  CL119 HEK-293T C478(1.28)  LDD1593  [8]
 LDCM0394  CL123 HEK-293T C478(1.21)  LDD1598  [8]
 LDCM0398  CL127 HEK-293T C478(1.34)  LDD1602  [8]
 LDCM0402  CL15 HEK-293T C478(1.14)  LDD1606  [8]
 LDCM0415  CL27 HEK-293T C478(1.21)  LDD1619  [8]
 LDCM0418  CL3 HEK-293T C478(1.00)  LDD1622  [8]
 LDCM0428  CL39 HEK-293T C478(1.39)  LDD1632  [8]
 LDCM0436  CL46 HEK-293T C377(1.11)  LDD1034  [7]
 LDCM0437  CL47 HEK-293T C377(1.00)  LDD1035  [7]
 LDCM0438  CL48 HEK-293T C377(0.87)  LDD1036  [7]
 LDCM0439  CL49 HEK-293T C377(1.07)  LDD1037  [7]
 LDCM0441  CL50 HEK-293T C377(1.31)  LDD1039  [7]
 LDCM0442  CL51 HEK-293T C377(0.93)  LDD1040  [7]
 LDCM0443  CL52 HEK-293T C377(0.84)  LDD1041  [7]
 LDCM0444  CL53 HEK-293T C377(0.72)  LDD1042  [7]
 LDCM0445  CL54 HEK-293T C377(0.89)  LDD1043  [7]
 LDCM0446  CL55 HEK-293T C377(0.88)  LDD1044  [7]
 LDCM0447  CL56 HEK-293T C377(0.78)  LDD1045  [7]
 LDCM0448  CL57 HEK-293T C377(0.87)  LDD1046  [7]
 LDCM0449  CL58 HEK-293T C377(0.94)  LDD1047  [7]
 LDCM0450  CL59 HEK-293T C377(1.20)  LDD1048  [7]
 LDCM0452  CL60 HEK-293T C377(1.39)  LDD1050  [7]
 LDCM0455  CL63 HEK-293T C478(1.06)  LDD1658  [8]
 LDCM0481  CL87 HEK-293T C478(1.00)  LDD1684  [8]
 LDCM0494  CL99 HEK-293T C478(1.00)  LDD1697  [8]
 LDCM0495  E2913 HEK-293T C478(1.36)  LDD1698  [8]
 LDCM0468  Fragment33 HEK-293T C478(1.32)  LDD1671  [8]
 LDCM0022  KB02 22RV1 C723(1.90); C991(2.83)  LDD2243  [1]
 LDCM0023  KB03 22RV1 C723(1.67); C991(3.66)  LDD2660  [1]
 LDCM0024  KB05 COLO792 C991(2.53)  LDD3310  [1]
 LDCM0109  NEM HeLa N.A.  LDD0227  [6]
 LDCM0541  Nucleophilic fragment 36 MDA-MB-231 C556(0.53)  LDD2134  [2]
 LDCM0547  Nucleophilic fragment 41 MDA-MB-231 C556(0.30)  LDD2141  [2]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 6 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Peroxisomal bifunctional enzyme (EHHADH) Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase family Q08426
Polyribonucleotide nucleotidyltransferase 1, mitochondrial (PNPT1) Polyribonucleotide nucleotidyltransferase family Q8TCS8
Casein kinase II subunit alpha (CSNK2A1) Ser/Thr protein kinase family P68400
Interferon-induced, double-stranded RNA-activated protein kinase (EIF2AK2) Ser/Thr protein kinase family P19525
NEDD4-like E3 ubiquitin-protein ligase WWP2 (WWP2) . O00308
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (PIN1) . Q13526
Transcription factor
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Transcription factor Jun (JUN) BZIP family P05412
NF-kappa-B-repressing factor (NKRF) . O15226
Other
Click To Hide/Show 6 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Interferon-inducible double-stranded RNA-dependent protein kinase activator A (PRKRA) PRKRA family O75569
RISC-loading complex subunit TARBP2 (TARBP2) TARBP2 family Q15633
Double-stranded RNA-binding protein Staufen homolog 1 (STAU1) . O95793
Spermatid perinuclear RNA-binding protein (STRBP) . Q96SI9
Storkhead-box protein 1 (STOX1) . Q6ZVD7
Zinc finger protein 346 (ZNF346) . Q9UL40

References

1 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
2 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
3 Chemoproteomic capture of RNA binding activity in living cells. Nat Commun. 2023 Oct 7;14(1):6282. doi: 10.1038/s41467-023-41844-z.
Mass spectrometry data entry: PXD044625
4 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853
5 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
6 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
7 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
8 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402