Details of the Target
General Information of Target
Target ID | LDTP05149 | |||||
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Target Name | Double-stranded RNA-specific editase 1 (ADARB1) | |||||
Gene Name | ADARB1 | |||||
Gene ID | 104 | |||||
Synonyms |
ADAR2; DRADA2; RED1; Double-stranded RNA-specific editase 1; EC 3.5.4.37; RNA-editing deaminase 1; RNA-editing enzyme 1; dsRNA adenosine deaminase |
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3D Structure | ||||||
Sequence |
MDIEDEENMSSSSTDVKENRNLDNVSPKDGSTPGPGEGSQLSNGGGGGPGRKRPLEEGSN
GHSKYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQVF EGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGF ETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPPFPPPSGKNPVMIL NELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLH LDQTPSRQPIPSEGLQLHLPQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTG TDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDD QKRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEGSRSYTQAGVQWCNH GSLQPRPPGLLSDPSTSTFQGAGTTEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQ TWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAM YQRISNIEDLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDSAIEVINATTGKDE LGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFI KAGLGAWVEKPTEQDQFSLTP |
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Target Bioclass |
Enzyme
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Subcellular location |
Nucleus
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Function |
Catalyzes the hydrolytic deamination of adenosine to inosine in double-stranded RNA (dsRNA) referred to as A-to-I RNA editing. This may affect gene expression and function in a number of ways that include mRNA translation by changing codons and hence the amino acid sequence of proteins; pre-mRNA splicing by altering splice site recognition sequences; RNA stability by changing sequences involved in nuclease recognition; genetic stability in the case of RNA virus genomes by changing sequences during viral RNA replication; and RNA structure-dependent activities such as microRNA production or targeting or protein-RNA interactions. Can edit both viral and cellular RNAs and can edit RNAs at multiple sites (hyper-editing) or at specific sites (site-specific editing). Its cellular RNA substrates include: bladder cancer-associated protein (BLCAP), neurotransmitter receptors for glutamate (GRIA2 and GRIK2) and serotonin (HTR2C), GABA receptor (GABRA3) and potassium voltage-gated channel (KCNA1). Site-specific RNA editing of transcripts encoding these proteins results in amino acid substitutions which consequently alter their functional activities. Edits GRIA2 at both the Q/R and R/G sites efficiently but converts the adenosine in hotspot1 much less efficiently. Can exert a proviral effect towards human immunodeficiency virus type 1 (HIV-1) and enhances its replication via both an editing-dependent and editing-independent mechanism. The former involves editing of adenosines in the 5'UTR while the latter occurs via suppression of EIF2AK2/PKR activation and function. Can inhibit cell proliferation and migration and can stimulate exocytosis.; [Isoform 1]: Has a lower catalytic activity than isoform 2.; [Isoform 2]: Has a higher catalytic activity than isoform 1.
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Uniprot ID | ||||||
Ensemble ID | ||||||
HGNC ID |
Probe(s) Labeling This Target
ABPP Probe
Probe name | Structure | Binding Site(Ratio) | Interaction ID | Ref | |
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DBIA Probe Info |
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C991(2.53) | LDD3310 | [1] | |
BTD Probe Info |
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C556(0.53) | LDD2134 | [2] | |
AHL-Pu-1 Probe Info |
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C674(4.08) | LDD0169 | [3] | |
IA-alkyne Probe Info |
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C674(3.33) | LDD0372 | [3] | |
4-Iodoacetamidophenylacetylene Probe Info |
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N.A. | LDD0038 | [4] | |
Lodoacetamide azide Probe Info |
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N.A. | LDD0037 | [4] | |
IPM Probe Info |
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N.A. | LDD0147 | [5] | |
TFBX Probe Info |
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N.A. | LDD0148 | [5] | |
Acrolein Probe Info |
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N.A. | LDD0217 | [6] |
Competitor(s) Related to This Target
Competitor ID | Name | Cell line | Binding Site(Ratio) | Interaction ID | Ref |
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LDCM0026 | 4SU-RNA+native RNA | HEK-293T | C674(4.08) | LDD0169 | [3] |
LDCM0216 | AC100 | HEK-293T | C377(1.07) | LDD0814 | [7] |
LDCM0217 | AC101 | HEK-293T | C377(1.11) | LDD0815 | [7] |
LDCM0218 | AC102 | HEK-293T | C377(1.03) | LDD0816 | [7] |
LDCM0219 | AC103 | HEK-293T | C377(1.02) | LDD0817 | [7] |
LDCM0220 | AC104 | HEK-293T | C377(1.01) | LDD0818 | [7] |
LDCM0221 | AC105 | HEK-293T | C377(0.78) | LDD0819 | [7] |
LDCM0222 | AC106 | HEK-293T | C377(0.80) | LDD0820 | [7] |
LDCM0223 | AC107 | HEK-293T | C377(0.88) | LDD0821 | [7] |
LDCM0224 | AC108 | HEK-293T | C377(0.83) | LDD0822 | [7] |
LDCM0225 | AC109 | HEK-293T | C377(0.91) | LDD0823 | [7] |
LDCM0227 | AC110 | HEK-293T | C377(1.17) | LDD0825 | [7] |
LDCM0228 | AC111 | HEK-293T | C377(1.15) | LDD0826 | [7] |
LDCM0229 | AC112 | HEK-293T | C377(1.22) | LDD0827 | [7] |
LDCM0230 | AC113 | HEK-293T | C377(1.09) | LDD0828 | [7] |
LDCM0231 | AC114 | HEK-293T | C377(1.04) | LDD0829 | [7] |
LDCM0232 | AC115 | HEK-293T | C377(1.10) | LDD0830 | [7] |
LDCM0233 | AC116 | HEK-293T | C377(1.16) | LDD0831 | [7] |
LDCM0234 | AC117 | HEK-293T | C377(1.19) | LDD0832 | [7] |
LDCM0235 | AC118 | HEK-293T | C377(1.40) | LDD0833 | [7] |
LDCM0236 | AC119 | HEK-293T | C377(1.29) | LDD0834 | [7] |
LDCM0238 | AC120 | HEK-293T | C377(1.25) | LDD0836 | [7] |
LDCM0239 | AC121 | HEK-293T | C377(1.26) | LDD0837 | [7] |
LDCM0240 | AC122 | HEK-293T | C377(1.28) | LDD0838 | [7] |
LDCM0241 | AC123 | HEK-293T | C377(1.47) | LDD0839 | [7] |
LDCM0242 | AC124 | HEK-293T | C377(1.39) | LDD0840 | [7] |
LDCM0243 | AC125 | HEK-293T | C377(1.25) | LDD0841 | [7] |
LDCM0244 | AC126 | HEK-293T | C377(1.74) | LDD0842 | [7] |
LDCM0245 | AC127 | HEK-293T | C377(1.47) | LDD0843 | [7] |
LDCM0285 | AC25 | HEK-293T | C377(1.00) | LDD0883 | [7] |
LDCM0286 | AC26 | HEK-293T | C377(0.98) | LDD0884 | [7] |
LDCM0287 | AC27 | HEK-293T | C377(1.06) | LDD0885 | [7] |
LDCM0288 | AC28 | HEK-293T | C377(3.06) | LDD0886 | [7] |
LDCM0289 | AC29 | HEK-293T | C377(0.99) | LDD0887 | [7] |
LDCM0291 | AC30 | HEK-293T | C377(0.99) | LDD0889 | [7] |
LDCM0292 | AC31 | HEK-293T | C377(0.98) | LDD0890 | [7] |
LDCM0293 | AC32 | HEK-293T | C377(0.90) | LDD0891 | [7] |
LDCM0294 | AC33 | HEK-293T | C377(1.09) | LDD0892 | [7] |
LDCM0295 | AC34 | HEK-293T | C377(1.05) | LDD0893 | [7] |
LDCM0365 | AC98 | HEK-293T | C377(0.95) | LDD0963 | [7] |
LDCM0366 | AC99 | HEK-293T | C377(0.82) | LDD0964 | [7] |
LDCM0108 | Chloroacetamide | HeLa | C556(0.00); C393(0.00) | LDD0222 | [6] |
LDCM0372 | CL103 | HEK-293T | C478(1.20) | LDD1576 | [8] |
LDCM0376 | CL107 | HEK-293T | C478(0.92) | LDD1580 | [8] |
LDCM0381 | CL111 | HEK-293T | C478(0.98) | LDD1585 | [8] |
LDCM0382 | CL112 | HEK-293T | C377(0.96) | LDD0980 | [7] |
LDCM0383 | CL113 | HEK-293T | C377(0.89) | LDD0981 | [7] |
LDCM0384 | CL114 | HEK-293T | C377(1.60) | LDD0982 | [7] |
LDCM0385 | CL115 | HEK-293T | C377(1.29) | LDD0983 | [7] |
LDCM0386 | CL116 | HEK-293T | C377(1.33) | LDD0984 | [7] |
LDCM0389 | CL119 | HEK-293T | C478(1.28) | LDD1593 | [8] |
LDCM0394 | CL123 | HEK-293T | C478(1.21) | LDD1598 | [8] |
LDCM0398 | CL127 | HEK-293T | C478(1.34) | LDD1602 | [8] |
LDCM0402 | CL15 | HEK-293T | C478(1.14) | LDD1606 | [8] |
LDCM0415 | CL27 | HEK-293T | C478(1.21) | LDD1619 | [8] |
LDCM0418 | CL3 | HEK-293T | C478(1.00) | LDD1622 | [8] |
LDCM0428 | CL39 | HEK-293T | C478(1.39) | LDD1632 | [8] |
LDCM0436 | CL46 | HEK-293T | C377(1.11) | LDD1034 | [7] |
LDCM0437 | CL47 | HEK-293T | C377(1.00) | LDD1035 | [7] |
LDCM0438 | CL48 | HEK-293T | C377(0.87) | LDD1036 | [7] |
LDCM0439 | CL49 | HEK-293T | C377(1.07) | LDD1037 | [7] |
LDCM0441 | CL50 | HEK-293T | C377(1.31) | LDD1039 | [7] |
LDCM0442 | CL51 | HEK-293T | C377(0.93) | LDD1040 | [7] |
LDCM0443 | CL52 | HEK-293T | C377(0.84) | LDD1041 | [7] |
LDCM0444 | CL53 | HEK-293T | C377(0.72) | LDD1042 | [7] |
LDCM0445 | CL54 | HEK-293T | C377(0.89) | LDD1043 | [7] |
LDCM0446 | CL55 | HEK-293T | C377(0.88) | LDD1044 | [7] |
LDCM0447 | CL56 | HEK-293T | C377(0.78) | LDD1045 | [7] |
LDCM0448 | CL57 | HEK-293T | C377(0.87) | LDD1046 | [7] |
LDCM0449 | CL58 | HEK-293T | C377(0.94) | LDD1047 | [7] |
LDCM0450 | CL59 | HEK-293T | C377(1.20) | LDD1048 | [7] |
LDCM0452 | CL60 | HEK-293T | C377(1.39) | LDD1050 | [7] |
LDCM0455 | CL63 | HEK-293T | C478(1.06) | LDD1658 | [8] |
LDCM0481 | CL87 | HEK-293T | C478(1.00) | LDD1684 | [8] |
LDCM0494 | CL99 | HEK-293T | C478(1.00) | LDD1697 | [8] |
LDCM0495 | E2913 | HEK-293T | C478(1.36) | LDD1698 | [8] |
LDCM0468 | Fragment33 | HEK-293T | C478(1.32) | LDD1671 | [8] |
LDCM0022 | KB02 | 22RV1 | C723(1.90); C991(2.83) | LDD2243 | [1] |
LDCM0023 | KB03 | 22RV1 | C723(1.67); C991(3.66) | LDD2660 | [1] |
LDCM0024 | KB05 | COLO792 | C991(2.53) | LDD3310 | [1] |
LDCM0109 | NEM | HeLa | N.A. | LDD0227 | [6] |
LDCM0541 | Nucleophilic fragment 36 | MDA-MB-231 | C556(0.53) | LDD2134 | [2] |
LDCM0547 | Nucleophilic fragment 41 | MDA-MB-231 | C556(0.30) | LDD2141 | [2] |
The Interaction Atlas With This Target
The Protein(s) Related To This Target
Enzyme
Transcription factor
Protein name | Family | Uniprot ID | |||
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Transcription factor Jun (JUN) | BZIP family | P05412 | |||
NF-kappa-B-repressing factor (NKRF) | . | O15226 |
Other
References