General Information of Target

Target ID LDTP03891
Target Name Nicotinamide N-methyltransferase (NNMT)
Gene Name NNMT
Gene ID 4837
Synonyms
Nicotinamide N-methyltransferase; EC 2.1.1.1
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI
DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN
RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL
RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ
SYSSTMANNEGLFSLVARKLSRPL
Target Bioclass
Enzyme
Family
Class I-like SAM-binding methyltransferase superfamily, NNMT/PNMT/TEMT family
Subcellular location
Cytoplasm
Function
Catalyzes the N-methylation of nicotinamide using the universal methyl donor S-adenosyl-L-methionine to form N1-methylnicotinamide and S-adenosyl-L-homocysteine, a predominant nicotinamide/vitamin B3 clearance pathway. Plays a central role in regulating cellular methylation potential, by consuming S-adenosyl-L-methionine and limiting its availability for other methyltransferases. Actively mediates genome-wide epigenetic and transcriptional changes through hypomethylation of repressive chromatin marks, such as H3K27me3. In a developmental context, contributes to low levels of the repressive histone marks that characterize pluripotent embryonic stem cell pre-implantation state. Acts as a metabolic regulator primarily on white adipose tissue energy expenditure as well as hepatic gluconeogenesis and cholesterol biosynthesis. In white adipocytes, regulates polyamine flux by consuming S-adenosyl-L-methionine which provides for propylamine group in polyamine biosynthesis, whereas by consuming nicotinamide controls NAD(+) levels through the salvage pathway. Via its product N1-methylnicotinamide regulates protein acetylation in hepatocytes, by repressing the ubiquitination and increasing the stability of SIRT1 deacetylase. Can also N-methylate other pyridines structurally related to nicotinamide and play a role in xenobiotic detoxification.
Uniprot ID
P40261
Ensemble ID
ENST00000299964.4
HGNC ID
HGNC:7861
ChEMBL ID
CHEMBL2346486

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 14 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
STPyne
 Probe Info 
K210(5.63); K23(5.21); K26(10.00); K39(10.00)  LDD0277  [1]
BTD
 Probe Info 
C50(3.25)  LDD1699  [2]
DBIA
 Probe Info 
C50(1.48); C115(0.82)  LDD3314  [3]
THZ1-DTB
 Probe Info 
C170(1.10); C159(1.05); C165(1.01)  LDD0460  [4]
IPM
 Probe Info 
C50(0.62)  LDD1701  [2]
5E-2FA
 Probe Info 
N.A.  LDD2235  [5]
m-APA
 Probe Info 
N.A.  LDD2231  [5]
WYneO
 Probe Info 
N.A.  LDD0022  [6]
IA-alkyne
 Probe Info 
N.A.  LDD0151  [7]
TFBX
 Probe Info 
N.A.  LDD0148  [8]
Acrolein
 Probe Info 
H31(0.00); C50(0.00); H14(0.00)  LDD0217  [9]
Methacrolein
 Probe Info 
N.A.  LDD0218  [9]
HHS-475
 Probe Info 
Y20(3.30); Y203(1.77)  LDD2238  [10]
HHS-482
 Probe Info 
Y11(1.29); Y203(1.05); Y86(1.14)  LDD2239  [10]
PAL-AfBPP Probe
Click To Hide/Show 4 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
FFF probe13
 Probe Info 
10.88  LDD0476  [11]
FFF probe3
 Probe Info 
5.08  LDD0465  [11]
STS-2
 Probe Info 
N.A.  LDD0139  [12]
DA-2
 Probe Info 
N.A.  LDD0072  [13]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0524  2-Cyano-N-(2-morpholin-4-yl-ethyl)-acetamide MDA-MB-231 C50(0.81)  LDD2117  [2]
 LDCM0108  Chloroacetamide HeLa H14(0.00); H31(0.00); C50(0.00)  LDD0222  [9]
 LDCM0107  IAA HeLa H14(0.00); H31(0.00); C50(0.00)  LDD0221  [9]
 LDCM0022  KB02 42-MG-BA C75(2.34); C115(2.09)  LDD2244  [3]
 LDCM0023  KB03 MDA-MB-231 C50(0.62)  LDD1701  [2]
 LDCM0024  KB05 IGR37 C50(1.48); C115(0.82)  LDD3314  [3]
 LDCM0109  NEM HeLa H14(0.00); H31(0.00)  LDD0223  [9]
 LDCM0514  Nucleophilic fragment 20a MDA-MB-231 C50(0.95)  LDD2107  [2]
 LDCM0516  Nucleophilic fragment 21a MDA-MB-231 C50(0.69)  LDD2109  [2]
 LDCM0530  Nucleophilic fragment 28a MDA-MB-231 C50(0.96)  LDD2123  [2]
 LDCM0532  Nucleophilic fragment 29a MDA-MB-231 C50(1.32)  LDD2125  [2]
 LDCM0534  Nucleophilic fragment 30a MDA-MB-231 C50(1.46)  LDD2127  [2]
 LDCM0543  Nucleophilic fragment 38 MDA-MB-231 C50(1.28)  LDD2136  [2]
 LDCM0544  Nucleophilic fragment 39 MDA-MB-231 C50(0.85)  LDD2137  [2]
 LDCM0021  THZ1 HeLa S3 C170(1.10); C159(1.05); C165(1.01)  LDD0460  [4]

The Interaction Atlas With This Target

The Drug(s) Related To This Target

Approved
Click To Hide/Show 1 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Niacin Small molecular drug DB00627

References

1 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
2 Nucleophilic covalent ligand discovery for the cysteine redoxome. Nat Chem Biol. 2023 Nov;19(11):1309-1319. doi: 10.1038/s41589-023-01330-5. Epub 2023 May 29.
Mass spectrometry data entry: PXD039908 , PXD029761
3 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
4 A Chemoproteomic Strategy for Direct and Proteome-Wide Covalent Inhibitor Target-Site Identification. J Am Chem Soc. 2019 Jan 9;141(1):191-203. doi: 10.1021/jacs.8b07911. Epub 2018 Dec 20.
5 Global profiling of functional histidines in live cells using small-molecule photosensitizer and chemical probe relay labelling. Nat Chem. 2024 Jun 4. doi: 10.1038/s41557-024-01545-6. Online ahead of print.
Mass spectrometry data entry: PXD042377
6 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
7 Sequence-Based Prediction of Cysteine Reactivity Using Machine Learning. Biochemistry. 2018 Jan 30;57(4):451-460. doi: 10.1021/acs.biochem.7b00897. Epub 2017 Oct 26.
8 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
9 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
10 Global targeting of functional tyrosines using sulfur-triazole exchange chemistry. Nat Chem Biol. 2020 Feb;16(2):150-159. doi: 10.1038/s41589-019-0404-5. Epub 2019 Nov 25.
11 Ligand and Target Discovery by Fragment-Based Screening in Human Cells. Cell. 2017 Jan 26;168(3):527-541.e29. doi: 10.1016/j.cell.2016.12.029. Epub 2017 Jan 19.
12 Design and synthesis of minimalist terminal alkyne-containing diazirine photo-crosslinkers and their incorporation into kinase inhibitors for cell- and tissue-based proteome profiling. Angew Chem Int Ed Engl. 2013 Aug 12;52(33):8551-6. doi: 10.1002/anie.201300683. Epub 2013 Jun 10.
13 Cell-based proteome profiling of potential dasatinib targets by use of affinity-based probes. J Am Chem Soc. 2012 Feb 15;134(6):3001-14. doi: 10.1021/ja208518u. Epub 2012 Feb 1.