General Information of Target

Target ID LDTP01784
Target Name Tyrosine-protein kinase ABL1 (ABL1)
Gene Name ABL1
Gene ID 25
Synonyms
ABL; JTK7; Tyrosine-protein kinase ABL1; EC 2.7.10.2; Abelson murine leukemia viral oncogene homolog 1; Abelson tyrosine-protein kinase 1; Proto-oncogene c-Abl; p150
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MLEICLKLVGCKSKKGLSSSSSCYLEEALQRPVASDFEPQGLSEAARWNSKENLLAGPSE
NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN
SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS
DGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWEMERT
DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQ
LLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFI
HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS
DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNP
SDRPSFAEIHQAFETMFQESSISDEVEKELGKQGVRGAVSTLLQAPELPTKTRTSRRAAE
HRDTTDVPEMPHSKGQGESDPLDHEPAVSPLLPRKERGPPEGGLNEDERLLPKDKKTNLF
SALIKKKKKTAPTPPKRSSSFREMDGQPERRGAGEEEGRDISNGALAFTPLDTADPAKSP
KPSNGAGVPNGALRESGGSGFRSPHLWKKSSTLTSSRLATGEEEGGGSSSKRFLRSCSAS
CVPHGAKDTEWRSVTLPRDLQSTGRQFDSSTFGGHKSEKPALPRKRAGENRSDQVTRGTV
TPPPRLVKKNEEAADEVFKDIMESSPGSSPPNLTPKPLRRQVTVAPASGLPHKEEAGKGS
ALGTPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPP
PPPAASAGKAGGKPSQSPSQEAAGEAVLGAKTKATSLVDAVNSDAAKPSQPGEGLKKPVL
PATPKPQSAKPSGTPISPAPVPSTLPSASSALAGDQPSSTAFIPLISTRVSLRKTRQPPE
RIASGAITKGVVLDSTEALCLAISRNSEQMASHSAVLEAGKNLYTFCVSYVDSIQQMRNK
FAFREAINKLENNLRELQICPATAGSGPAATQDFSKLLSSVKEISDIVQR
Target Type
Successful
Target Bioclass
Enzyme
Family
Protein kinase superfamily, Tyr protein kinase family, ABL subfamily
Subcellular location
Cytoplasm, cytoskeleton
Function
Non-receptor tyrosine-protein kinase that plays a role in many key processes linked to cell growth and survival such as cytoskeleton remodeling in response to extracellular stimuli, cell motility and adhesion, receptor endocytosis, autophagy, DNA damage response and apoptosis. Coordinates actin remodeling through tyrosine phosphorylation of proteins controlling cytoskeleton dynamics like WASF3 (involved in branch formation); ANXA1 (involved in membrane anchoring); DBN1, DBNL, CTTN, RAPH1 and ENAH (involved in signaling); or MAPT and PXN (microtubule-binding proteins). Phosphorylation of WASF3 is critical for the stimulation of lamellipodia formation and cell migration. Involved in the regulation of cell adhesion and motility through phosphorylation of key regulators of these processes such as BCAR1, CRK, CRKL, DOK1, EFS or NEDD9. Phosphorylates multiple receptor tyrosine kinases and more particularly promotes endocytosis of EGFR, facilitates the formation of neuromuscular synapses through MUSK, inhibits PDGFRB-mediated chemotaxis and modulates the endocytosis of activated B-cell receptor complexes. Other substrates which are involved in endocytosis regulation are the caveolin (CAV1) and RIN1. Moreover, ABL1 regulates the CBL family of ubiquitin ligases that drive receptor down-regulation and actin remodeling. Phosphorylation of CBL leads to increased EGFR stability. Involved in late-stage autophagy by regulating positively the trafficking and function of lysosomal components. ABL1 targets to mitochondria in response to oxidative stress and thereby mediates mitochondrial dysfunction and cell death. In response to oxidative stress, phosphorylates serine/threonine kinase PRKD2 at 'Tyr-717'. ABL1 is also translocated in the nucleus where it has DNA-binding activity and is involved in DNA-damage response and apoptosis. Many substrates are known mediators of DNA repair: DDB1, DDB2, ERCC3, ERCC6, RAD9A, RAD51, RAD52 or WRN. Activates the proapoptotic pathway when the DNA damage is too severe to be repaired. Phosphorylates TP73, a primary regulator for this type of damage-induced apoptosis. Phosphorylates the caspase CASP9 on 'Tyr-153' and regulates its processing in the apoptotic response to DNA damage. Phosphorylates PSMA7 that leads to an inhibition of proteasomal activity and cell cycle transition blocks. ABL1 acts also as a regulator of multiple pathological signaling cascades during infection. Several known tyrosine-phosphorylated microbial proteins have been identified as ABL1 substrates. This is the case of A36R of Vaccinia virus, Tir (translocated intimin receptor) of pathogenic E.coli and possibly Citrobacter, CagA (cytotoxin-associated gene A) of H.pylori, or AnkA (ankyrin repeat-containing protein A) of A.phagocytophilum. Pathogens can highjack ABL1 kinase signaling to reorganize the host actin cytoskeleton for multiple purposes, like facilitating intracellular movement and host cell exit. Finally, functions as its own regulator through autocatalytic activity as well as through phosphorylation of its inhibitor, ABI1. Regulates T-cell differentiation in a TBX21-dependent manner. Positively regulates chemokine-mediated T-cell migration, polarization, and homing to lymph nodes and immune-challenged tissues, potentially via activation of NEDD9/HEF1 and RAP1. Phosphorylates TBX21 on tyrosine residues leading to an enhancement of its transcriptional activator activity.
TTD ID
T63505
Uniprot ID
P00519
DrugMap ID
TTZJTWA
Ensemble ID
ENST00000318560.6
HGNC ID
HGNC:76
ChEMBL ID
CHEMBL1862

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
CAL27 SNV: p.P441L .
COLO792 Substitution: p.T700I DBIA    Probe Info 
HCT116 SNV: p.Y257C .
HDMYZ SNV: p.I1127T .
HEC1 SNV: p.R483W .
HSC3 SNV: p.V371I .
HT SNV: p.H552R .
IGROV1 Deletion: p.R785GfsTer3 DBIA    Probe Info 
KYSE410 SNV: p.K87E DBIA    Probe Info 
LNCaP clone FGC SNV: p.N770S DBIA    Probe Info 
LS180 Deletion: p.G864AfsTer12 DBIA    Probe Info 
MCC13 Substitution: p.R1095W .
MDAMB436 SNV: p.C100G .
MFE319 SNV: p.A825V .
RKO SNV: p.F747I .
TF1 SNV: p.E409K .
UACC257 Substitution: p.P951L .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 9 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
A-EBA
 Probe Info 
3.57  LDD0214  [1]
TH211
 Probe Info 
Y393(15.92)  LDD0257  [2]
DBIA
 Probe Info 
C1100(70.17)  LDD0209  [3]
IA-alkyne
 Probe Info 
C305(0.00); C464(0.00)  LDD0165  [4]
IPM
 Probe Info 
N.A.  LDD0025  [5]
JW-RF-010
 Probe Info 
N.A.  LDD0026  [5]
NAIA_5
 Probe Info 
N.A.  LDD2224  [6]
VSF
 Probe Info 
N.A.  LDD0007  [7]
AOyne
 Probe Info 
15.00  LDD0443  [8]
PAL-AfBPP Probe
Click To Hide/Show 2 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
Dasatinib-CA-3PAP
 Probe Info 
N.A.  LDD0365  [9]
Dasatinib-CA-8PAP
 Probe Info 
N.A.  LDD0364  [9]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0097  Dasatinib K562 N.A.  LDD0364  [9]
 LDCM0625  F8 Ramos C1100(1.66)  LDD2187  [10]
 LDCM0573  Fragment11 Ramos C1100(0.70)  LDD2190  [10]
 LDCM0575  Fragment13 Ramos C1100(1.77)  LDD2192  [10]
 LDCM0576  Fragment14 Ramos C1100(0.90)  LDD2193  [10]
 LDCM0580  Fragment21 Ramos C1100(1.14)  LDD2195  [10]
 LDCM0582  Fragment23 Ramos C1100(2.76)  LDD2196  [10]
 LDCM0578  Fragment27 Ramos C1100(1.86)  LDD2197  [10]
 LDCM0586  Fragment28 Ramos C1100(0.39)  LDD2198  [10]
 LDCM0588  Fragment30 Ramos C1100(0.95)  LDD2199  [10]
 LDCM0589  Fragment31 Ramos C1100(1.41)  LDD2200  [10]
 LDCM0468  Fragment33 Ramos C1100(1.35)  LDD2202  [10]
 LDCM0596  Fragment38 Ramos C1100(0.84)  LDD2203  [10]
 LDCM0566  Fragment4 Ramos C1100(2.44)  LDD2184  [10]
 LDCM0610  Fragment52 Ramos C1100(1.84)  LDD2204  [10]
 LDCM0614  Fragment56 Ramos C1100(0.83)  LDD2205  [10]
 LDCM0569  Fragment7 Ramos C1100(0.87)  LDD2186  [10]
 LDCM0022  KB02 HEK-293T C1100(0.99)  LDD1492  [11]
 LDCM0023  KB03 Jurkat C1100(70.17)  LDD0209  [3]
 LDCM0024  KB05 MONO-MAC-6 C483(2.26)  LDD3335  [12]
 LDCM0627  NUDT7-COV-1 HEK-293T C1100(0.83)  LDD2206  [13]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 11 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Serine-protein kinase ATM (ATM) PI3/PI4-kinase family Q13315
Mitogen-activated protein kinase kinase kinase kinase 1 (MAP4K1) STE Ser/Thr protein kinase family Q92918
Leucine-rich repeat serine/threonine-protein kinase 1 (LRRK1) TKL Ser/Thr protein kinase family Q38SD2
Mast/stem cell growth factor receptor Kit (KIT) Tyr protein kinase family P10721
Receptor-type tyrosine-protein kinase FLT3 (FLT3) Tyr protein kinase family P36888
Epidermal growth factor receptor (EGFR) Tyr protein kinase family P00533
Receptor tyrosine-protein kinase erbB-2 (ERBB2) Tyr protein kinase family P04626
Proto-oncogene tyrosine-protein kinase Src (SRC) Tyr protein kinase family P12931
DNA excision repair protein ERCC-6 (ERCC6) SNF2/RAD54 helicase family Q03468
DNA topoisomerase 1 (TOP1) Type IB topoisomerase family P11387
Disintegrin and metalloproteinase domain-containing protein 10 (ADAM10) . O14672
Transporter and channel
Click To Hide/Show 7 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
14-3-3 protein gamma (YWHAG) 14-3-3 family P61981
14-3-3 protein zeta/delta (YWHAZ) 14-3-3 family P63104
Gap junction alpha-8 protein (GJA8) Connexin family P48165
Filamin-C (FLNC) Filamin family Q14315
Solute carrier family 22 member 3 (SLC22A3) Organic cation transporter (TC 2.A.1.19) family O75751
Alpha-synuclein (SNCA) Synuclein family P37840
Talin-2 (TLN2) . Q9Y4G6
Transcription factor
Click To Hide/Show 2 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Androgen receptor (AR) Nuclear hormone receptor family P10275
Signal transducer and activator of transcription 5B (STAT5B) Transcription factor STAT family P51692
Immunoglobulin
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Cell adhesion molecule-related/down-regulated by oncogenes (CDON) . Q4KMG0
Other
Click To Hide/Show 20 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
14-3-3 protein sigma (SFN) 14-3-3 family P31947
Abl interactor 1 (ABI1) ABI family Q8IZP0
Abl interactor 2 (ABI2) ABI family Q9NYB9
Catenin beta-1 (CTNNB1) Beta-catenin family P35222
Adapter molecule crk (CRK) CRK family P46108
Crk-like protein (CRKL) CRK family P46109
MutS protein homolog 5 (MSH5) DNA mismatch repair MutS family O43196
Integrin beta-2 (ITGB2) Integrin beta chain family P05107
Keratin, type I cuticular Ha1 (KRT31) Intermediate filament family Q15323
Prickle planar cell polarity protein 3 (PRICKLE3) Prickle / espinas / testin family O43900
Ras and Rab interactor 1 (RIN1) RIN (Ras interaction/interference) family Q13671
Mitochondrial antiviral-signaling protein (MAVS) . Q7Z434
Mucin-1 (MUC1) . P15941
Proto-oncogene vav (VAV1) . P15498
Rap guanine nucleotide exchange factor 1 (RAPGEF1) . Q13905
Regulating synaptic membrane exocytosis protein 1 (RIMS1) . Q86UR5
SH2 domain-containing adapter protein B (SHB) . Q15464
SH2/SH3 adapter protein NCK1 (NCK1) . P16333
Son of sevenless homolog 2 (SOS2) . Q07890
Sorbin and SH3 domain-containing protein 1 (SORBS1) . Q9BX66

The Drug(s) Related To This Target

Approved
Click To Hide/Show 10 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Asciminib Small molecular drug DB12597
Bosutinib Small molecular drug DB06616
Brigatinib Small molecular drug DB12267
Dasatinib Small molecular drug DB01254
Fostamatinib Small molecular drug DB12010
Imatinib Small molecular drug DB00619
Nilotinib Small molecular drug DB04868
Ponatinib Small molecular drug DB08901
Regorafenib Small molecular drug DB08896
Umbralisib . DB14989
Investigative
Click To Hide/Show 15 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
Atp Small molecular drug DB00171
Gnf-5 Small molecular drug D0Q8BK
Myristic Acid Small molecular drug DB08231
Pd-166326 Small molecular drug DB08339
Pmid21561767c8h Small molecular drug D02BXJ
Pmid23441572c24 Small molecular drug D0JR3W
Pmid24900538c2c Small molecular drug D0E7VO
Pp121 Small molecular drug D03EHM
Radotinib Small molecular drug DB12323
1-[4-(Pyridin-4-yloxy)Phenyl]-3-[3-(Trifluoromethyl)Phenyl]Urea . DB08043
2-amino-5-[3-(1-ethyl-1h-pyrazol-5-yl)-1h-pyrrolo[23-b]Pyridin-5-yl]-nn-dimethylbenzamide . DB08583
2-{[(6-oxo-16-dihydropyridin-3-yl)Methyl]Amino}-n-[4-propyl-3-(Trifluoromethyl)Phenyl]Benzamide . DB07831
5-[3-(2-methoxyphenyl)-1h-pyrrolo[23-b]Pyridin-5-yl]-nn-dimethylpyridine-3-carboxamide . DB08350
N-[4-methyl-3-[[4-(3-pyridinyl)-2-pyrimidinyl]Amino]Phenyl]-3-pyridinecarboxamide . DB03878
Xl228 . DB05184
Discontinued
Click To Hide/Show 1 Drug(s) Interacting with This Target
Drug Name Drug Type External ID
G-1128 Antisense drug D05RUJ

References

1 2-Ethynylbenzaldehyde-Based, Lysine-Targeting Irreversible Covalent Inhibitors for Protein Kinases and Nonkinases. J Am Chem Soc. 2023 Feb 12. doi: 10.1021/jacs.2c11595. Online ahead of print.
Mass spectrometry data entry: PXD037665
2 Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes. Chem Sci. 2021 Jan 21;12(9):3295-3307. doi: 10.1039/d0sc06623k.
3 Covalent Inhibition by a Natural Product-Inspired Latent Electrophile. J Am Chem Soc. 2023 May 24;145(20):11097-11109. doi: 10.1021/jacs.3c00598. Epub 2023 May 15.
4 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
5 Chemoproteomic Profiling by Cysteine Fluoroalkylation Reveals Myrocin G as an Inhibitor of the Nonhomologous End Joining DNA Repair Pathway. J Am Chem Soc. 2021 Dec 8;143(48):20332-20342. doi: 10.1021/jacs.1c09724. Epub 2021 Nov 24.
Mass spectrometry data entry: PXD029255
6 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
7 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
8 Chemoproteomic profiling of targets of lipid-derived electrophiles by bioorthogonal aminooxy probe. Redox Biol. 2017 Aug;12:712-718. doi: 10.1016/j.redox.2017.04.001. Epub 2017 Apr 5.
9 Streamlined Target Deconvolution Approach Utilizing a Single Photoreactive Chloroalkane Capture Tag. ACS Chem Biol. 2021 Feb 19;16(2):404-413. doi: 10.1021/acschembio.0c00987. Epub 2021 Feb 5.
10 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578
11 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
12 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
13 Rapid Covalent-Probe Discovery by Electrophile-Fragment Screening. J Am Chem Soc. 2019 Jun 5;141(22):8951-8968. doi: 10.1021/jacs.9b02822. Epub 2019 May 22.