General Information of Target

Target ID LDTP07585
Target Name Kelch domain-containing protein 10 (KLHDC10)
Gene Name KLHDC10
Gene ID 23008
Synonyms
KIAA0265; Kelch domain-containing protein 10
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MSAAQGWDRNRRRGGGAAGAGGGGSGAGGGSGGSGGRGTGQLNRFVQLSGRPHLPGKKKI
RWDPVRRRFIQSCPIIRIPNRFLRGHRPPPARSGHRCVADNTNLYVFGGYNPDYDESGGP
DNEDYPLFRELWRYHFATGVWHQMGTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESN
GNDVHVCNVKYKRWALLSCRGKKPSRIYGQAMAIINGSLYVFGGTTGYIYSTDLHKLDLN
TREWTQLKPNNLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWE
EIATKPHEKIGFPAARRCHSCVQIKNDVFICGGYNGEVILGDIWKLNLQTFQWVKLPATM
PEPVYFHCAAVTPAGCMYIHGGVVNIHENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNL
ANLSRTQLLHLGLTQGLIERLK
Target Bioclass
Other
Subcellular location
Nucleus
Function
Substrate-recognition component of a Cul2-RING (CRL2) E3 ubiquitin-protein ligase complex of the DesCEND (destruction via C-end degrons) pathway, which recognizes a C-degron located at the extreme C terminus of target proteins, leading to their ubiquitination and degradation. The C-degron recognized by the DesCEND pathway is usually a motif of less than ten residues and can be present in full-length proteins, truncated proteins or proteolytically cleaved forms. The CRL2(KLHDC10) complex specifically recognizes proteins with a proline-glycine (Pro-Gly) or an alanine tail (CAT tail) at the C-terminus, leading to their ubiquitination and degradation. The CRL2(KLHDC10) complex is involved in the ribosome-associated quality control (RQC) pathway, which mediates the extraction of incompletely synthesized nascent chains from stalled ribosomes: CRL2(KLHDC10) acts downstream of NEMF and recognizes CAT tails associated with stalled nascent chains, leading to their ubiquitination and degradation. Participates in the oxidative stress-induced cell death through MAP3K5 activation. Inhibits PPP5C phosphatase activity on MAP3K5. Acts as a regulator of necroptosis.
Uniprot ID
Q6PID8
Ensemble ID
ENST00000335420.10
HGNC ID
HGNC:22194

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
A498 Deletion: p.E300CfsTer6 .
CHL1 SNV: p.L131F .
JURKAT SNV: p.Y292H .
KURAMOCHI SNV: p.S34R; p.R37G .
MOLM16 SNV: p.I310T .
RKO SNV: p.S320G .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 2 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C254(1.10)  LDD1513  [1]
IA-alkyne
 Probe Info 
N.A.  LDD0165  [2]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0270  AC15 HEK-293T C254(1.10)  LDD1513  [1]
 LDCM0283  AC23 HEK-293T C254(1.06)  LDD1522  [1]
 LDCM0284  AC24 HEK-293T C254(1.02)  LDD1523  [1]
 LDCM0292  AC31 HEK-293T C254(1.14)  LDD1531  [1]
 LDCM0293  AC32 HEK-293T C254(1.01)  LDD1532  [1]
 LDCM0300  AC39 HEK-293T C254(0.97)  LDD1539  [1]
 LDCM0302  AC40 HEK-293T C254(1.21)  LDD1541  [1]
 LDCM0309  AC47 HEK-293T C254(1.10)  LDD1548  [1]
 LDCM0310  AC48 HEK-293T C254(1.00)  LDD1549  [1]
 LDCM0318  AC55 HEK-293T C254(1.11)  LDD1557  [1]
 LDCM0319  AC56 HEK-293T C254(1.02)  LDD1558  [1]
 LDCM0327  AC63 HEK-293T C254(1.13)  LDD1566  [1]
 LDCM0328  AC64 HEK-293T C254(1.24)  LDD1567  [1]
 LDCM0334  AC7 HEK-293T C254(1.08)  LDD1568  [1]
 LDCM0345  AC8 HEK-293T C254(0.96)  LDD1569  [1]
 LDCM0275  AKOS034007705 HEK-293T C254(1.00)  LDD1514  [1]
 LDCM0379  CL11 HEK-293T C254(0.88)  LDD1583  [1]
 LDCM0390  CL12 HEK-293T C254(0.76)  LDD1594  [1]
 LDCM0411  CL23 HEK-293T C254(0.93)  LDD1615  [1]
 LDCM0412  CL24 HEK-293T C254(0.80)  LDD1616  [1]
 LDCM0424  CL35 HEK-293T C254(0.76)  LDD1628  [1]
 LDCM0425  CL36 HEK-293T C254(0.72)  LDD1629  [1]
 LDCM0437  CL47 HEK-293T C254(0.87)  LDD1641  [1]
 LDCM0438  CL48 HEK-293T C254(0.69)  LDD1642  [1]
 LDCM0450  CL59 HEK-293T C254(0.84)  LDD1653  [1]
 LDCM0452  CL60 HEK-293T C254(0.85)  LDD1655  [1]
 LDCM0464  CL71 HEK-293T C254(0.81)  LDD1667  [1]
 LDCM0465  CL72 HEK-293T C254(0.73)  LDD1668  [1]
 LDCM0477  CL83 HEK-293T C254(0.94)  LDD1680  [1]
 LDCM0478  CL84 HEK-293T C254(0.88)  LDD1681  [1]
 LDCM0490  CL95 HEK-293T C254(0.85)  LDD1693  [1]
 LDCM0491  CL96 HEK-293T C254(0.87)  LDD1694  [1]
 LDCM0625  F8 Ramos C254(1.53)  LDD2187  [3]
 LDCM0572  Fragment10 Ramos C254(1.06)  LDD2189  [3]
 LDCM0573  Fragment11 Ramos C254(20.00)  LDD2190  [3]
 LDCM0574  Fragment12 Ramos C254(1.03)  LDD2191  [3]
 LDCM0575  Fragment13 Ramos C254(1.22)  LDD2192  [3]
 LDCM0576  Fragment14 Ramos C254(0.70); C199(1.17)  LDD2193  [3]
 LDCM0579  Fragment20 Ramos C254(1.43)  LDD2194  [3]
 LDCM0580  Fragment21 Ramos C254(0.92)  LDD2195  [3]
 LDCM0582  Fragment23 Ramos C254(1.13)  LDD2196  [3]
 LDCM0578  Fragment27 Ramos C254(1.09)  LDD2197  [3]
 LDCM0586  Fragment28 Ramos C254(0.67)  LDD2198  [3]
 LDCM0588  Fragment30 Ramos C254(1.34)  LDD2199  [3]
 LDCM0589  Fragment31 Ramos C254(0.83)  LDD2200  [3]
 LDCM0590  Fragment32 Ramos C254(1.22)  LDD2201  [3]
 LDCM0468  Fragment33 Ramos C254(1.17)  LDD2202  [3]
 LDCM0596  Fragment38 Ramos C254(0.93)  LDD2203  [3]
 LDCM0566  Fragment4 Ramos C254(0.89); C199(2.91)  LDD2184  [3]
 LDCM0610  Fragment52 Ramos C254(0.91)  LDD2204  [3]
 LDCM0614  Fragment56 Ramos C254(0.96)  LDD2205  [3]
 LDCM0569  Fragment7 Ramos C254(1.03); C199(3.62)  LDD2186  [3]
 LDCM0571  Fragment9 Ramos C254(1.46)  LDD2188  [3]
 LDCM0022  KB02 Ramos C254(0.70)  LDD2182  [3]
 LDCM0023  KB03 Ramos C254(0.93)  LDD2183  [3]
 LDCM0024  KB05 Ramos C254(0.95); C199(7.72)  LDD2185  [3]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Other
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
NudC domain-containing protein 3 (NUDCD3) . Q8IVD9

References

1 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
2 SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. Chembiochem. 2021 May 14;22(10):1841-1851. doi: 10.1002/cbic.202000870. Epub 2021 Feb 18.
Mass spectrometry data entry: PXD023056 , PXD023059 , PXD023058 , PXD023057 , PXD023060
3 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578