General Information of Target

Target ID LDTP06541
Target Name Cryptochrome-1 (CRY1)
Gene Name CRY1
Gene ID 1407
Synonyms
PHLL1; Cryptochrome-1
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLE
DLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEA
GVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTT
PLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMN
ANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAA
TNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHA
VACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGR
RTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLN
IERMKQIYQQLSRYRGLGLLASVPSNPNGNGGFMGYSAENIPGCSSSGSCSQGSGILHYA
HGDSQQTHLLKQGRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN
Target Type
Preclinical
Target Bioclass
Enzyme
Family
DNA photolyase class-1 family
Subcellular location
Cytoplasm
Function
Transcriptional repressor which forms a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in gene expression, which are translated into rhythms in metabolism and behavior. It is derived from the Latin roots 'circa' (about) and 'diem' (day) and acts as an important regulator of a wide array of physiological functions including metabolism, sleep, body temperature, blood pressure, endocrine, immune, cardiovascular, and renal function. Consists of two major components: the central clock, residing in the suprachiasmatic nucleus (SCN) of the brain, and the peripheral clocks that are present in nearly every tissue and organ system. Both the central and peripheral clocks can be reset by environmental cues, also known as Zeitgebers (German for 'timegivers'). The predominant Zeitgeber for the central clock is light, which is sensed by retina and signals directly to the SCN. The central clock entrains the peripheral clocks through neuronal and hormonal signals, body temperature and feeding-related cues, aligning all clocks with the external light/dark cycle. Circadian rhythms allow an organism to achieve temporal homeostasis with its environment at the molecular level by regulating gene expression to create a peak of protein expression once every 24 hours to control when a particular physiological process is most active with respect to the solar day. Transcription and translation of core clock components (CLOCK, NPAS2, BMAL1, BMAL2, PER1, PER2, PER3, CRY1 and CRY2) plays a critical role in rhythm generation, whereas delays imposed by post-translational modifications (PTMs) are important for determining the period (tau) of the rhythms (tau refers to the period of a rhythm and is the length, in time, of one complete cycle). A diurnal rhythm is synchronized with the day/night cycle, while the ultradian and infradian rhythms have a period shorter and longer than 24 hours, respectively. Disruptions in the circadian rhythms contribute to the pathology of cardiovascular diseases, cancer, metabolic syndromes and aging. A transcription/translation feedback loop (TTFL) forms the core of the molecular circadian clock mechanism. Transcription factors, CLOCK or NPAS2 and BMAL1 or BMAL2, form the positive limb of the feedback loop, act in the form of a heterodimer and activate the transcription of core clock genes and clock-controlled genes (involved in key metabolic processes), harboring E-box elements (5'-CACGTG-3') within their promoters. The core clock genes: PER1/2/3 and CRY1/2 which are transcriptional repressors form the negative limb of the feedback loop and interact with the CLOCK|NPAS2-BMAL1|BMAL2 heterodimer inhibiting its activity and thereby negatively regulating their own expression. This heterodimer also activates nuclear receptors NR1D1/2 and RORA/B/G, which form a second feedback loop and which activate and repress BMAL1 transcription, respectively. CRY1 and CRY2 have redundant functions but also differential and selective contributions at least in defining the pace of the SCN circadian clock and its circadian transcriptional outputs. More potent transcriptional repressor in cerebellum and liver than CRY2, though more effective in lengthening the period of the SCN oscillator. On its side, CRY2 seems to play a critical role in tuning SCN circadian period by opposing the action of CRY1. With CRY2, is dispensable for circadian rhythm generation but necessary for the development of intercellular networks for rhythm synchrony. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. Interacts with CLOCK-BMAL1 independently of PER proteins and is found at CLOCK-BMAL1-bound sites, suggesting that CRY may act as a molecular gatekeeper to maintain CLOCK-BMAL1 in a poised and repressed state until the proper time for transcriptional activation. Represses the CLOCK-BMAL1 induced transcription of BHLHE40/DEC1. Represses the CLOCK-BMAL1 induced transcription of ATF4, MTA1, KLF10 and NAMPT. May repress circadian target genes expression in collaboration with HDAC1 and HDAC2 through histone deacetylation. Mediates the clock-control activation of ATR and modulates ATR-mediated DNA damage checkpoint. In liver, mediates circadian regulation of cAMP signaling and gluconeogenesis by binding to membrane-coupled G proteins and blocking glucagon-mediated increases in intracellular cAMP concentrations and CREB1 phosphorylation. Inhibits hepatic gluconeogenesis by decreasing nuclear FOXO1 levels that down-regulates gluconeogenic gene expression. Besides its role in the maintenance of the circadian clock, is also involved in the regulation of other processes. Represses glucocorticoid receptor NR3C1/GR-induced transcriptional activity by binding to glucocorticoid response elements (GREs). Plays a key role in glucose and lipid metabolism modulation, in part, through the transcriptional regulation of genes involved in these pathways, such as LEP or ACSL4. Represses PPARD and its target genes in the skeletal muscle and limits exercise capacity. Plays an essential role in the generation of circadian rhythms in the retina. Represses the transcriptional activity of NR1I2.
TTD ID
T12108
Uniprot ID
Q16526
DrugMap ID
TT5MLZR
Ensemble ID
ENST00000008527.10
HGNC ID
HGNC:2384
ChEMBL ID
CHEMBL4296246

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 2 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C24(0.84); C315(1.17)  LDD1492  [1]
NAIA_5
 Probe Info 
C460(0.00); C33(0.00)  LDD2223  [2]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HEK-293T C315(0.96)  LDD1507  [1]
 LDCM0215  AC10 HEK-293T C315(1.08)  LDD1508  [1]
 LDCM0226  AC11 HEK-293T C315(1.14); C363(0.96)  LDD1509  [1]
 LDCM0259  AC14 HEK-293T C315(1.11); C363(1.12)  LDD1512  [1]
 LDCM0270  AC15 HEK-293T C315(1.01); C363(1.18)  LDD1513  [1]
 LDCM0276  AC17 HEK-293T C315(0.88)  LDD1515  [1]
 LDCM0277  AC18 HEK-293T C315(1.04)  LDD1516  [1]
 LDCM0278  AC19 HEK-293T C315(0.94); C363(1.07)  LDD1517  [1]
 LDCM0279  AC2 HEK-293T C315(1.29)  LDD1518  [1]
 LDCM0281  AC21 HEK-293T C315(1.07)  LDD1520  [1]
 LDCM0282  AC22 HEK-293T C315(0.89); C363(1.08)  LDD1521  [1]
 LDCM0283  AC23 HEK-293T C315(1.04); C363(1.06)  LDD1522  [1]
 LDCM0284  AC24 HEK-293T C315(0.84)  LDD1523  [1]
 LDCM0285  AC25 HEK-293T C315(0.90)  LDD1524  [1]
 LDCM0286  AC26 HEK-293T C315(0.96)  LDD1525  [1]
 LDCM0287  AC27 HEK-293T C315(0.89); C363(1.08)  LDD1526  [1]
 LDCM0289  AC29 HEK-293T C315(0.99)  LDD1528  [1]
 LDCM0290  AC3 HEK-293T C315(1.03); C363(1.12)  LDD1529  [1]
 LDCM0291  AC30 HEK-293T C315(1.19); C363(0.98)  LDD1530  [1]
 LDCM0292  AC31 HEK-293T C315(1.13); C363(0.93)  LDD1531  [1]
 LDCM0293  AC32 HEK-293T C315(0.98)  LDD1532  [1]
 LDCM0294  AC33 HEK-293T C315(0.84)  LDD1533  [1]
 LDCM0295  AC34 HEK-293T C315(1.13)  LDD1534  [1]
 LDCM0296  AC35 HEK-293T C315(1.08); C363(1.17)  LDD1535  [1]
 LDCM0298  AC37 HEK-293T C315(1.07)  LDD1537  [1]
 LDCM0299  AC38 HEK-293T C315(1.11); C363(1.41)  LDD1538  [1]
 LDCM0300  AC39 HEK-293T C315(0.96); C363(1.10)  LDD1539  [1]
 LDCM0302  AC40 HEK-293T C315(1.01)  LDD1541  [1]
 LDCM0303  AC41 HEK-293T C315(1.13)  LDD1542  [1]
 LDCM0304  AC42 HEK-293T C315(0.85)  LDD1543  [1]
 LDCM0305  AC43 HEK-293T C315(0.98); C363(1.09)  LDD1544  [1]
 LDCM0307  AC45 HEK-293T C315(1.16)  LDD1546  [1]
 LDCM0308  AC46 HEK-293T C315(0.92); C363(1.07)  LDD1547  [1]
 LDCM0309  AC47 HEK-293T C315(1.23); C363(1.09)  LDD1548  [1]
 LDCM0310  AC48 HEK-293T C315(0.87)  LDD1549  [1]
 LDCM0311  AC49 HEK-293T C315(1.03)  LDD1550  [1]
 LDCM0312  AC5 HEK-293T C315(1.03)  LDD1551  [1]
 LDCM0313  AC50 HEK-293T C315(0.93)  LDD1552  [1]
 LDCM0314  AC51 HEK-293T C315(1.14); C363(1.12)  LDD1553  [1]
 LDCM0316  AC53 HEK-293T C315(1.03)  LDD1555  [1]
 LDCM0317  AC54 HEK-293T C315(1.08); C363(1.14)  LDD1556  [1]
 LDCM0318  AC55 HEK-293T C315(0.99); C363(0.98)  LDD1557  [1]
 LDCM0319  AC56 HEK-293T C315(0.82)  LDD1558  [1]
 LDCM0320  AC57 HEK-293T C315(0.86)  LDD1559  [1]
 LDCM0321  AC58 HEK-293T C315(1.14)  LDD1560  [1]
 LDCM0322  AC59 HEK-293T C315(0.86); C363(1.00)  LDD1561  [1]
 LDCM0323  AC6 HEK-293T C315(1.01); C363(0.94)  LDD1562  [1]
 LDCM0325  AC61 HEK-293T C315(1.19)  LDD1564  [1]
 LDCM0326  AC62 HEK-293T C315(1.05); C363(1.09)  LDD1565  [1]
 LDCM0327  AC63 HEK-293T C315(0.99); C363(0.96)  LDD1566  [1]
 LDCM0328  AC64 HEK-293T C315(0.96)  LDD1567  [1]
 LDCM0334  AC7 HEK-293T C315(1.46); C363(1.16)  LDD1568  [1]
 LDCM0345  AC8 HEK-293T C315(0.83)  LDD1569  [1]
 LDCM0248  AKOS034007472 HEK-293T C315(1.17)  LDD1511  [1]
 LDCM0356  AKOS034007680 HEK-293T C315(1.08)  LDD1570  [1]
 LDCM0275  AKOS034007705 HEK-293T C315(0.92)  LDD1514  [1]
 LDCM0367  CL1 HEK-293T C315(0.85)  LDD1571  [1]
 LDCM0368  CL10 HEK-293T C315(1.14); C363(1.19)  LDD1572  [1]
 LDCM0370  CL101 HEK-293T C315(1.04)  LDD1574  [1]
 LDCM0371  CL102 HEK-293T C315(0.86)  LDD1575  [1]
 LDCM0372  CL103 HEK-293T C315(1.04)  LDD1576  [1]
 LDCM0374  CL105 HEK-293T C315(0.89)  LDD1578  [1]
 LDCM0375  CL106 HEK-293T C315(0.75)  LDD1579  [1]
 LDCM0376  CL107 HEK-293T C315(1.03)  LDD1580  [1]
 LDCM0378  CL109 HEK-293T C315(1.07)  LDD1582  [1]
 LDCM0379  CL11 HEK-293T C315(1.16); C363(1.09)  LDD1583  [1]
 LDCM0380  CL110 HEK-293T C315(0.64)  LDD1584  [1]
 LDCM0381  CL111 HEK-293T C315(1.25)  LDD1585  [1]
 LDCM0383  CL113 HEK-293T C315(0.81)  LDD1587  [1]
 LDCM0384  CL114 HEK-293T C315(0.82)  LDD1588  [1]
 LDCM0385  CL115 HEK-293T C315(1.02)  LDD1589  [1]
 LDCM0387  CL117 HEK-293T C315(0.91)  LDD1591  [1]
 LDCM0388  CL118 HEK-293T C315(0.87)  LDD1592  [1]
 LDCM0389  CL119 HEK-293T C315(1.06)  LDD1593  [1]
 LDCM0390  CL12 HEK-293T C315(1.08)  LDD1594  [1]
 LDCM0392  CL121 HEK-293T C315(0.84)  LDD1596  [1]
 LDCM0393  CL122 HEK-293T C315(1.02)  LDD1597  [1]
 LDCM0394  CL123 HEK-293T C315(1.02)  LDD1598  [1]
 LDCM0396  CL125 HEK-293T C315(0.96)  LDD1600  [1]
 LDCM0397  CL126 HEK-293T C315(0.87)  LDD1601  [1]
 LDCM0398  CL127 HEK-293T C315(1.07)  LDD1602  [1]
 LDCM0400  CL13 HEK-293T C315(0.93)  LDD1604  [1]
 LDCM0401  CL14 HEK-293T C315(0.84)  LDD1605  [1]
 LDCM0402  CL15 HEK-293T C315(1.05)  LDD1606  [1]
 LDCM0404  CL17 HEK-293T C315(0.99)  LDD1608  [1]
 LDCM0405  CL18 HEK-293T C315(1.21)  LDD1609  [1]
 LDCM0406  CL19 HEK-293T C315(1.22); C363(1.13)  LDD1610  [1]
 LDCM0407  CL2 HEK-293T C315(0.93)  LDD1611  [1]
 LDCM0409  CL21 HEK-293T C315(1.03)  LDD1613  [1]
 LDCM0410  CL22 HEK-293T C315(1.08); C363(1.35)  LDD1614  [1]
 LDCM0411  CL23 HEK-293T C315(1.18); C363(1.08)  LDD1615  [1]
 LDCM0412  CL24 HEK-293T C315(1.01)  LDD1616  [1]
 LDCM0413  CL25 HEK-293T C315(1.00)  LDD1617  [1]
 LDCM0414  CL26 HEK-293T C315(0.87)  LDD1618  [1]
 LDCM0415  CL27 HEK-293T C315(1.23)  LDD1619  [1]
 LDCM0417  CL29 HEK-293T C315(1.17)  LDD1621  [1]
 LDCM0418  CL3 HEK-293T C315(1.21)  LDD1622  [1]
 LDCM0419  CL30 HEK-293T C315(1.18)  LDD1623  [1]
 LDCM0420  CL31 HEK-293T C315(0.95); C363(1.03)  LDD1624  [1]
 LDCM0422  CL33 HEK-293T C315(1.28)  LDD1626  [1]
 LDCM0423  CL34 HEK-293T C315(1.13); C363(1.18)  LDD1627  [1]
 LDCM0424  CL35 HEK-293T C315(1.05); C363(1.12)  LDD1628  [1]
 LDCM0425  CL36 HEK-293T C315(1.00)  LDD1629  [1]
 LDCM0426  CL37 HEK-293T C315(0.83)  LDD1630  [1]
 LDCM0428  CL39 HEK-293T C315(0.97)  LDD1632  [1]
 LDCM0431  CL41 HEK-293T C315(1.01)  LDD1635  [1]
 LDCM0432  CL42 HEK-293T C315(0.96)  LDD1636  [1]
 LDCM0433  CL43 HEK-293T C315(0.88); C363(1.15)  LDD1637  [1]
 LDCM0435  CL45 HEK-293T C315(0.96)  LDD1639  [1]
 LDCM0436  CL46 HEK-293T C315(1.11); C363(1.47)  LDD1640  [1]
 LDCM0437  CL47 HEK-293T C315(1.17); C363(1.13)  LDD1641  [1]
 LDCM0438  CL48 HEK-293T C315(0.93)  LDD1642  [1]
 LDCM0439  CL49 HEK-293T C315(0.93)  LDD1643  [1]
 LDCM0440  CL5 HEK-293T C315(0.91)  LDD1644  [1]
 LDCM0441  CL50 HEK-293T C315(0.78)  LDD1645  [1]
 LDCM0444  CL53 HEK-293T C315(1.17)  LDD1647  [1]
 LDCM0445  CL54 HEK-293T C315(1.22)  LDD1648  [1]
 LDCM0446  CL55 HEK-293T C315(1.01); C363(1.03)  LDD1649  [1]
 LDCM0448  CL57 HEK-293T C315(1.13)  LDD1651  [1]
 LDCM0449  CL58 HEK-293T C315(1.00); C363(1.29)  LDD1652  [1]
 LDCM0450  CL59 HEK-293T C315(1.14); C363(1.33)  LDD1653  [1]
 LDCM0451  CL6 HEK-293T C315(1.13)  LDD1654  [1]
 LDCM0452  CL60 HEK-293T C315(0.88)  LDD1655  [1]
 LDCM0453  CL61 HEK-293T C315(1.03)  LDD1656  [1]
 LDCM0454  CL62 HEK-293T C315(0.81)  LDD1657  [1]
 LDCM0455  CL63 HEK-293T C315(1.05)  LDD1658  [1]
 LDCM0457  CL65 HEK-293T C315(1.09)  LDD1660  [1]
 LDCM0458  CL66 HEK-293T C315(0.94)  LDD1661  [1]
 LDCM0459  CL67 HEK-293T C315(0.99); C363(1.26)  LDD1662  [1]
 LDCM0461  CL69 HEK-293T C315(1.01)  LDD1664  [1]
 LDCM0462  CL7 HEK-293T C315(1.19); C363(1.21)  LDD1665  [1]
 LDCM0463  CL70 HEK-293T C315(0.98); C363(1.35)  LDD1666  [1]
 LDCM0464  CL71 HEK-293T C315(1.23); C363(1.10)  LDD1667  [1]
 LDCM0465  CL72 HEK-293T C315(1.27)  LDD1668  [1]
 LDCM0466  CL73 HEK-293T C315(0.81)  LDD1669  [1]
 LDCM0467  CL74 HEK-293T C315(0.88)  LDD1670  [1]
 LDCM0470  CL77 HEK-293T C315(0.80)  LDD1673  [1]
 LDCM0471  CL78 HEK-293T C315(1.12)  LDD1674  [1]
 LDCM0472  CL79 HEK-293T C315(1.07); C363(1.11)  LDD1675  [1]
 LDCM0475  CL81 HEK-293T C315(1.02)  LDD1678  [1]
 LDCM0476  CL82 HEK-293T C315(1.00); C363(1.46)  LDD1679  [1]
 LDCM0477  CL83 HEK-293T C315(1.07); C363(0.96)  LDD1680  [1]
 LDCM0478  CL84 HEK-293T C315(0.93)  LDD1681  [1]
 LDCM0479  CL85 HEK-293T C315(0.95)  LDD1682  [1]
 LDCM0480  CL86 HEK-293T C315(0.91)  LDD1683  [1]
 LDCM0481  CL87 HEK-293T C315(1.35)  LDD1684  [1]
 LDCM0483  CL89 HEK-293T C315(1.26)  LDD1686  [1]
 LDCM0484  CL9 HEK-293T C315(1.04)  LDD1687  [1]
 LDCM0485  CL90 HEK-293T C315(1.12)  LDD1688  [1]
 LDCM0486  CL91 HEK-293T C315(1.16); C363(1.05)  LDD1689  [1]
 LDCM0488  CL93 HEK-293T C315(1.22)  LDD1691  [1]
 LDCM0489  CL94 HEK-293T C315(1.04); C363(1.22)  LDD1692  [1]
 LDCM0490  CL95 HEK-293T C315(1.13); C363(0.91)  LDD1693  [1]
 LDCM0491  CL96 HEK-293T C315(0.87)  LDD1694  [1]
 LDCM0492  CL97 HEK-293T C315(1.02)  LDD1695  [1]
 LDCM0493  CL98 HEK-293T C315(0.81)  LDD1696  [1]
 LDCM0494  CL99 HEK-293T C315(1.17)  LDD1697  [1]
 LDCM0495  E2913 HEK-293T C315(0.97)  LDD1698  [1]
 LDCM0468  Fragment33 HEK-293T C315(1.06)  LDD1671  [1]
 LDCM0427  Fragment51 HEK-293T C315(0.74)  LDD1631  [1]
 LDCM0022  KB02 HEK-293T C24(0.84); C315(1.17)  LDD1492  [1]
 LDCM0023  KB03 HEK-293T C24(0.98); C315(1.07)  LDD1497  [1]
 LDCM0024  KB05 HEK-293T C24(0.95); C315(1.12)  LDD1502  [1]

References

1 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
2 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264