General Information of Target

Target ID LDTP00521
Target Name Period circadian protein homolog 2 (PER2)
Gene Name PER2
Gene ID 8864
Synonyms
KIAA0347; Period circadian protein homolog 2; hPER2; Circadian clock protein PERIOD 2
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MNGYAEFPPSPSNPTKEPVEPQPSQVPLQEDVDMSSGSSGHETNENCSTGRDSQGSDCDD
SGKELGMLVEPPDARQSPDTFSLMMAKSEHNPSTSGCSSDQSSKVDTHKELIKTLKELKV
HLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSEGHPCGADVPSYTVEEMES
VTSEHIVKNADMFAVAVSLVSGKILYISDQVASIFHCKRDAFSDAKFVEFLAPHDVGVFH
SFTSPYKLPLWSMCSGADSFTQECMEEKSFFCRVSVRKSHENEIRYHPFRMTPYLVKVRD
QQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQDVDERAVPLLGYLPQD
LIETPVLVQLHPSDRPLMLAIHKKILQSGGQPFDYSPIRFRARNGEYITLDTSWSSFINP
WSRKISFIIGRHKVRVGPLNEDVFAAHPCTEEKALHPSIQELTEQIHRLLLQPVPHSGSS
GYGSLGSNGSHEHLMSQTSSSDSNGHEDSRRRRAEICKNGNKTKNRSHYSHESGEQKKKS
VTEMQTNPPAEKKAVPAMEKDSLGVSFPEELACKNQPTCSYQQISCLDSVIRYLESCNEA
ATLKRKCEFPANVPALRSSDKRKATVSPGPHAGEAEPPSRVNSRTGVGTHLTSLALPGKA
ESVASLTSQCSYSSTIVHVGDKKPQPELEMVEDAASGPESLDCLAGPALACGLSQEKEPF
KKLGLTKEVLAAHTQKEEQSFLQKFKEIRKLSIFQSHCHYYLQERSKGQPSERTAPGLRN
TSGIDSPWKKTGKNRKLKSKRVKPRDSSESTGSGGPVSARPPLVGLNATAWSPSDTSQSS
CPAVPFPAPVPAAYSLPVFPAPGTVAAPPAPPHASFTVPAVPVDLQHQFAVQPPPFPAPL
APVMAFMLPSYSFPSGTPNLPQAFFPSQPQFPSHPTLTSEMASASQPEFPSRTSIPRQPC
ACPATRATPPSAMGRASPPLFQSRSSSPLQLNLLQLEEAPEGGTGAMGTTGATETAAVGA
DCKPGTSRDQQPKAPLTRDEPSDTQNSDALSTSSGLLNLLLNEDLCSASGSAASESLGSG
SLGCDASPSGAGSSDTSHTSKYFGSIDSSENNHKAKMNTGMEESEHFIKCVLQDPIWLLM
ADADSSVMMTYQLPSRNLEAVLKEDREKLKLLQKLQPRFTESQKQELREVHQWMQTGGLP
AAIDVAECVYCENKEKGNICIPYEEDIPSLGLSEVSDTKEDENGSPLNHRIEEQT
Target Bioclass
Other
Subcellular location
Nucleus; Nucleus, nucleolus
Function
Transcriptional repressor which forms a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in gene expression, which are translated into rhythms in metabolism and behavior. It is derived from the Latin roots 'circa' (about) and 'diem' (day) and acts as an important regulator of a wide array of physiological functions including metabolism, sleep, body temperature, blood pressure, endocrine, immune, cardiovascular, and renal function. Consists of two major components: the central clock, residing in the suprachiasmatic nucleus (SCN) of the brain, and the peripheral clocks that are present in nearly every tissue and organ system. Both the central and peripheral clocks can be reset by environmental cues, also known as Zeitgebers (German for 'timegivers'). The predominant Zeitgeber for the central clock is light, which is sensed by retina and signals directly to the SCN. The central clock entrains the peripheral clocks through neuronal and hormonal signals, body temperature and feeding-related cues, aligning all clocks with the external light/dark cycle. Circadian rhythms allow an organism to achieve temporal homeostasis with its environment at the molecular level by regulating gene expression to create a peak of protein expression once every 24 hours to control when a particular physiological process is most active with respect to the solar day. Transcription and translation of core clock components (CLOCK, NPAS2, BMAL1, BMAL2, PER1, PER2, PER3, CRY1 and CRY2) plays a critical role in rhythm generation, whereas delays imposed by post-translational modifications (PTMs) are important for determining the period (tau) of the rhythms (tau refers to the period of a rhythm and is the length, in time, of one complete cycle). A diurnal rhythm is synchronized with the day/night cycle, while the ultradian and infradian rhythms have a period shorter and longer than 24 hours, respectively. Disruptions in the circadian rhythms contribute to the pathology of cardiovascular diseases, cancer, metabolic syndrome and aging. A transcription/translation feedback loop (TTFL) forms the core of the molecular circadian clock mechanism. Transcription factors, CLOCK or NPAS2 and BMAL1 or BMAL2, form the positive limb of the feedback loop, act in the form of a heterodimer and activate the transcription of core clock genes and clock-controlled genes (involved in key metabolic processes), harboring E-box elements (5'-CACGTG-3') within their promoters. The core clock genes: PER1/2/3 and CRY1/2 which are transcriptional repressors form the negative limb of the feedback loop and interact with the CLOCK|NPAS2-BMAL1|BMAL2 heterodimer inhibiting its activity and thereby negatively regulating their own expression. This heterodimer also activates nuclear receptors NR1D1/2 and RORA/B/G, which form a second feedback loop and which activate and repress BMAL1 transcription, respectively. PER1 and PER2 proteins transport CRY1 and CRY2 into the nucleus with appropriate circadian timing, but also contribute directly to repression of clock-controlled target genes through interaction with several classes of RNA-binding proteins, helicases and others transcriptional repressors. PER appears to regulate circadian control of transcription by at least three different modes. First, interacts directly with the CLOCK-BMAL1 at the tail end of the nascent transcript peak to recruit complexes containing the SIN3-HDAC that remodel chromatin to repress transcription. Second, brings H3K9 methyltransferases such as SUV39H1 and SUV39H2 to the E-box elements of the circadian target genes, like PER2 itself or PER1. The recruitment of each repressive modifier to the DNA seems to be very precisely temporally orchestrated by the large PER complex, the deacetylases acting before than the methyltransferases. Additionally, large PER complexes are also recruited to the target genes 3' termination site through interactions with RNA-binding proteins and helicases that may play a role in transcription termination to regulate transcription independently of CLOCK-BMAL1 interactions. Recruitment of large PER complexes to the elongating polymerase at PER and CRY termination sites inhibited SETX action, impeding RNA polymerase II release and thereby repressing transcriptional reinitiation. May propagate clock information to metabolic pathways via the interaction with nuclear receptors. Coactivator of PPARA and corepressor of NR1D1, binds rhythmically at the promoter of nuclear receptors target genes like BMAL1 or G6PC1. Directly and specifically represses PPARG proadipogenic activity by blocking PPARG recruitment to target promoters and thereby inhibiting transcriptional activation. Required for fatty acid and lipid metabolism, is involved as well in the regulation of circulating insulin levels. Plays an important role in the maintenance of cardiovascular functions through the regulation of NO and vasodilatatory prostaglandins production in aortas. Controls circadian glutamate uptake in synaptic vesicles through the regulation of VGLUT1 expression. May also be involved in the regulation of inflammatory processes. Represses the CLOCK-BMAL1 induced transcription of BHLHE40/DEC1 and ATF4. Negatively regulates the formation of the TIMELESS-CRY1 complex by competing with TIMELESS for binding to CRY1.
Uniprot ID
O15055
Ensemble ID
ENST00000254657.8
HGNC ID
HGNC:8846
ChEMBL ID
CHEMBL3751648

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
42MGBA SNV: p.A1020T .
COLO792 SNV: p.M192V .
HCT15 SNV: p.S39N .
MCC13 SNV: p.V641M
Substitution: p.S818F
.
NUGC3 SNV: p.A611T; p.A1049T .
RL952 Insertion: p.T791NfsTer19 .
SUIT2 SNV: p.Y321H .
TE10 SNV: p.P1246H .
TE4 SNV: p.G62W .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 4 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C579(1.26); C586(1.26)  LDD0078  [1]
NAIA_5
 Probe Info 
N.A.  LDD2225  [2]
IPM
 Probe Info 
N.A.  LDD2156  [3]
YN-1
 Probe Info 
D300(0.00); E315(0.00)  LDD0447  [4]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HCT 116 C579(0.67); C586(0.67)  LDD0531  [1]
 LDCM0216  AC100 HCT 116 C579(0.88); C586(0.88)  LDD0533  [1]
 LDCM0217  AC101 HCT 116 C579(1.03); C586(1.03)  LDD0534  [1]
 LDCM0218  AC102 HCT 116 C579(0.81); C586(0.81)  LDD0535  [1]
 LDCM0219  AC103 HCT 116 C579(1.17); C586(1.17)  LDD0536  [1]
 LDCM0220  AC104 HCT 116 C579(1.10); C586(1.10)  LDD0537  [1]
 LDCM0221  AC105 HCT 116 C579(1.35); C586(1.35)  LDD0538  [1]
 LDCM0222  AC106 HCT 116 C579(1.06); C586(1.06)  LDD0539  [1]
 LDCM0223  AC107 HCT 116 C579(1.35); C586(1.35)  LDD0540  [1]
 LDCM0224  AC108 HCT 116 C579(0.92); C586(0.92)  LDD0541  [1]
 LDCM0225  AC109 HCT 116 C579(0.76); C586(0.76)  LDD0542  [1]
 LDCM0227  AC110 HCT 116 C579(0.77); C586(0.77)  LDD0544  [1]
 LDCM0228  AC111 HCT 116 C579(0.91); C586(0.91)  LDD0545  [1]
 LDCM0229  AC112 HCT 116 C579(1.20); C586(1.20)  LDD0546  [1]
 LDCM0263  AC143 HCT 116 C579(0.78); C586(0.78)  LDD0580  [1]
 LDCM0264  AC144 HCT 116 C579(0.76); C586(0.86)  LDD0581  [1]
 LDCM0265  AC145 HCT 116 C586(0.87); C579(0.89)  LDD0582  [1]
 LDCM0266  AC146 HCT 116 C579(0.69); C586(0.74)  LDD0583  [1]
 LDCM0267  AC147 HCT 116 C579(0.81); C586(0.82)  LDD0584  [1]
 LDCM0268  AC148 HCT 116 C579(0.57); C586(0.79)  LDD0585  [1]
 LDCM0269  AC149 HCT 116 C579(0.89); C586(1.24)  LDD0586  [1]
 LDCM0271  AC150 HCT 116 C579(0.65); C586(0.78)  LDD0588  [1]
 LDCM0272  AC151 HCT 116 C579(0.88); C586(0.88)  LDD0589  [1]
 LDCM0273  AC152 HCT 116 C586(0.77); C579(0.89)  LDD0590  [1]
 LDCM0274  AC153 HCT 116 C579(0.65); C586(1.25)  LDD0591  [1]
 LDCM0621  AC154 HCT 116 C579(0.74); C586(0.75)  LDD2158  [1]
 LDCM0622  AC155 HCT 116 C579(0.65); C586(0.84)  LDD2159  [1]
 LDCM0623  AC156 HCT 116 C579(0.72); C586(0.94)  LDD2160  [1]
 LDCM0624  AC157 HCT 116 C579(0.80); C586(1.02)  LDD2161  [1]
 LDCM0279  AC2 HCT 116 C579(0.55); C586(0.55)  LDD0596  [1]
 LDCM0290  AC3 HCT 116 C579(0.75); C586(0.75)  LDD0607  [1]
 LDCM0301  AC4 HCT 116 C579(0.73); C586(0.73)  LDD0618  [1]
 LDCM0312  AC5 HCT 116 C579(0.64); C586(0.64)  LDD0629  [1]
 LDCM0349  AC83 HCT 116 C579(1.42); C586(1.42)  LDD0666  [1]
 LDCM0350  AC84 HCT 116 C579(1.78); C586(1.78)  LDD0667  [1]
 LDCM0351  AC85 HCT 116 C579(1.40); C586(1.40)  LDD0668  [1]
 LDCM0352  AC86 HCT 116 C579(2.11); C586(2.11)  LDD0669  [1]
 LDCM0353  AC87 HCT 116 C579(3.21); C586(3.21)  LDD0670  [1]
 LDCM0354  AC88 HCT 116 C579(2.30); C586(2.30)  LDD0671  [1]
 LDCM0355  AC89 HCT 116 C579(2.22); C586(2.22)  LDD0672  [1]
 LDCM0357  AC90 HCT 116 C579(1.51); C586(1.51)  LDD0674  [1]
 LDCM0358  AC91 HCT 116 C579(1.74); C586(1.74)  LDD0675  [1]
 LDCM0359  AC92 HCT 116 C579(2.29); C586(2.29)  LDD0676  [1]
 LDCM0360  AC93 HCT 116 C579(1.91); C586(1.91)  LDD0677  [1]
 LDCM0361  AC94 HCT 116 C579(1.66); C586(1.66)  LDD0678  [1]
 LDCM0362  AC95 HCT 116 C579(2.50); C586(2.50)  LDD0679  [1]
 LDCM0363  AC96 HCT 116 C579(3.42); C586(3.42)  LDD0680  [1]
 LDCM0364  AC97 HCT 116 C579(2.59); C586(2.59)  LDD0681  [1]
 LDCM0365  AC98 HCT 116 C579(1.65); C586(1.65)  LDD0682  [1]
 LDCM0366  AC99 HCT 116 C579(0.70); C586(0.70)  LDD0683  [1]
 LDCM0020  ARS-1620 HCC44 C579(1.26); C586(1.26)  LDD0078  [1]
 LDCM0632  CL-Sc Hep-G2 C97(1.54)  LDD2227  [2]
 LDCM0367  CL1 HCT 116 C579(1.27); C586(1.27)  LDD0684  [1]
 LDCM0368  CL10 HCT 116 C579(1.23); C586(1.23)  LDD0685  [1]
 LDCM0369  CL100 HCT 116 C579(0.79); C586(0.79)  LDD0686  [1]
 LDCM0379  CL11 HCT 116 C579(1.28); C586(1.28)  LDD0696  [1]
 LDCM0390  CL12 HCT 116 C579(0.84); C586(0.84)  LDD0707  [1]
 LDCM0400  CL13 HCT 116 C579(1.06); C586(1.06)  LDD0717  [1]
 LDCM0401  CL14 HCT 116 C579(1.33); C586(1.33)  LDD0718  [1]
 LDCM0402  CL15 HCT 116 C579(1.23); C586(1.23)  LDD0719  [1]
 LDCM0407  CL2 HCT 116 C579(1.25); C586(1.25)  LDD0724  [1]
 LDCM0418  CL3 HCT 116 C579(1.26); C586(1.26)  LDD0735  [1]
 LDCM0429  CL4 HCT 116 C579(0.98); C586(0.98)  LDD0746  [1]
 LDCM0440  CL5 HCT 116 C579(1.22); C586(1.22)  LDD0757  [1]
 LDCM0451  CL6 HCT 116 C579(1.24); C586(1.24)  LDD0768  [1]
 LDCM0462  CL7 HCT 116 C579(0.98); C586(0.98)  LDD0779  [1]
 LDCM0469  CL76 HCT 116 C579(1.18); C586(1.18)  LDD0786  [1]
 LDCM0470  CL77 HCT 116 C579(1.42); C586(1.42)  LDD0787  [1]
 LDCM0471  CL78 HCT 116 C579(2.00); C586(2.00)  LDD0788  [1]
 LDCM0472  CL79 HCT 116 C579(1.24); C586(1.24)  LDD0789  [1]
 LDCM0473  CL8 HCT 116 C579(0.89); C586(0.89)  LDD0790  [1]
 LDCM0474  CL80 HCT 116 C579(1.18); C586(1.18)  LDD0791  [1]
 LDCM0475  CL81 HCT 116 C579(1.25); C586(1.25)  LDD0792  [1]
 LDCM0476  CL82 HCT 116 C579(1.39); C586(1.39)  LDD0793  [1]
 LDCM0477  CL83 HCT 116 C579(1.36); C586(1.36)  LDD0794  [1]
 LDCM0478  CL84 HCT 116 C579(1.20); C586(1.20)  LDD0795  [1]
 LDCM0479  CL85 HCT 116 C579(1.14); C586(1.14)  LDD0796  [1]
 LDCM0480  CL86 HCT 116 C579(1.14); C586(1.14)  LDD0797  [1]
 LDCM0481  CL87 HCT 116 C579(1.16); C586(1.16)  LDD0798  [1]
 LDCM0482  CL88 HCT 116 C579(1.20); C586(1.20)  LDD0799  [1]
 LDCM0483  CL89 HCT 116 C579(1.44); C586(1.44)  LDD0800  [1]
 LDCM0484  CL9 HCT 116 C579(1.15); C586(1.15)  LDD0801  [1]
 LDCM0485  CL90 HCT 116 C579(1.96); C586(1.96)  LDD0802  [1]
 LDCM0486  CL91 HCT 116 C579(0.60); C586(0.60)  LDD0803  [1]
 LDCM0487  CL92 HCT 116 C579(0.67); C586(0.67)  LDD0804  [1]
 LDCM0488  CL93 HCT 116 C579(0.58); C586(0.58)  LDD0805  [1]
 LDCM0489  CL94 HCT 116 C579(0.59); C586(0.59)  LDD0806  [1]
 LDCM0490  CL95 HCT 116 C579(0.74); C586(0.74)  LDD0807  [1]
 LDCM0491  CL96 HCT 116 C579(0.68); C586(0.68)  LDD0808  [1]
 LDCM0492  CL97 HCT 116 C579(0.75); C586(0.75)  LDD0809  [1]
 LDCM0493  CL98 HCT 116 C579(0.61); C586(0.61)  LDD0810  [1]
 LDCM0494  CL99 HCT 116 C579(0.69); C586(0.69)  LDD0811  [1]
 LDCM0022  KB02 HCC15 C97(1.27)  LDD2340  [5]
 LDCM0023  KB03 HCC15 C97(1.28)  LDD2757  [5]
 LDCM0024  KB05 NCI-H1155 C97(1.38)  LDD3342  [5]
 LDCM0021  THZ1 HCT 116 C579(1.16); C586(1.16)  LDD2173  [1]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Casein kinase I isoform delta (CSNK1D) CK1 Ser/Thr protein kinase family P48730
Casein kinase I isoform epsilon (CSNK1E) CK1 Ser/Thr protein kinase family P49674
Protein PML (PML) . P29590
Other
Click To Hide/Show 5 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
DNA mismatch repair protein Mlh1 (MLH1) DNA mismatch repair MutL/HexB family P40692
Elongin-A (ELOA) . Q14241
Leukocyte receptor cluster member 8 (LENG8) . Q96PV6
LIM domain transcription factor LMO4 (LMO4) . P61968
Ubiquitin-like protein 4A (UBL4A) . P11441

References

1 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
2 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
3 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
4 Ynamide Electrophile for the Profiling of Ligandable Carboxyl Residues in Live Cells and the Development of New Covalent Inhibitors. J Med Chem. 2022 Aug 11;65(15):10408-10418. doi: 10.1021/acs.jmedchem.2c00272. Epub 2022 Jul 26.
5 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840