General Information of Target

Target ID LDTP11899
Target Name Charged multivesicular body protein 4b (CHMP4B)
Gene Name CHMP4B
Gene ID 128866
Synonyms
C20orf178; SHAX1; Charged multivesicular body protein 4b; Chromatin-modifying protein 4b; CHMP4b; SNF7 homolog associated with Alix 1; SNF7-2; hSnf7-2; Vacuolar protein sorting-associated protein 32-2; Vps32-2; hVps32-2
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MRRPSVRAAGLVLCTLCYLLVGAAVFDALESEAESGRQRLLVQKRGALRRKFGFSAEDYR
ELERLALQAEPHRAGRQWKFPGSFYFAITVITTIEYGHAAPGTDSGKVFCMFYALLGIPL
TLVTFQSLGERLNAVVRRLLLAAKCCLGLRWTCVSTENLVVAGLLACAATLALGAVAFSH
FEGWTFFHAYYYCFITLTTIGFGDFVALQSGEALQRKLPYVAFSFLYILLGLTVIGAFLN
LVVLRFLVASADWPERAARTPSPRPPGAPESRGLWLPRRPARSVGSASVFCHVHKLERCA
RDNLGFSPPSSPGVVRGGQAPRLGARWKSI
Target Type
Literature-reported
Target Bioclass
Other
Family
SNF7 family
Subcellular location
Cytoplasm, cytosol
Function
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. Together with SPAST, the ESCRT-III complex promotes nuclear envelope sealing and mitotic spindle disassembly during late anaphase. Plays a role in the endosomal sorting pathway. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. When overexpressed, membrane-assembled circular arrays of CHMP4B filaments can promote or stabilize negative curvature and outward budding. CHMP4A/B/C are required for the exosomal release of SDCBP, CD63 and syndecan. Majority of the protein exists in a folded closed conformation.; (Microbial infection) The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the budding of enveloped viruses (HIV-1 and other lentiviruses). Via its interaction with PDCD6IP involved in HIV-1 p6- and p9-dependent virus release.
TTD ID
T47731
Uniprot ID
Q9H444
DrugMap ID
TT09EZF
Ensemble ID
ENST00000217402.3
HGNC ID
HGNC:16171

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 11 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
C-Sul
 Probe Info 
4.88  LDD0066  [1]
ONAyne
 Probe Info 
K39(0.56)  LDD0274  [2]
Probe 1
 Probe Info 
Y111(72.52)  LDD3495  [3]
HHS-475
 Probe Info 
Y111(0.98)  LDD0264  [4]
HHS-465
 Probe Info 
Y111(8.97)  LDD2237  [5]
ATP probe
 Probe Info 
K14(0.00); K17(0.00)  LDD0199  [6]
CY4
 Probe Info 
D31(0.00); T32(0.00)  LDD0247  [7]
ATP probe
 Probe Info 
K70(0.00); K6(0.00)  LDD0035  [8]
NHS
 Probe Info 
N.A.  LDD0010  [9]
STPyne
 Probe Info 
N.A.  LDD0009  [9]
1c-yne
 Probe Info 
K17(0.00); K107(0.00)  LDD0228  [10]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0116  HHS-0101 DM93 Y111(0.98)  LDD0264  [4]
 LDCM0117  HHS-0201 DM93 Y111(0.93)  LDD0265  [4]
 LDCM0118  HHS-0301 DM93 Y111(0.91)  LDD0266  [4]
 LDCM0119  HHS-0401 DM93 Y111(0.95)  LDD0267  [4]
 LDCM0120  HHS-0701 DM93 Y111(0.93)  LDD0268  [4]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
STAM-binding protein (STAMBP) Peptidase M67C family O95630
Tyrosine-protein phosphatase non-receptor type 23 (PTPN23) Protein-tyrosine phosphatase family Q9H3S7
SUMO-conjugating enzyme UBC9 (UBE2I) Ubiquitin-conjugating enzyme family P63279
Transporter and channel
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Huntingtin (HTT) Huntingtin family P42858
Other
Click To Hide/Show 11 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
BRO1 domain-containing protein BROX (BROX) BROX family Q5VW32
Coiled-coil and C2 domain-containing protein 1A (CC2D1A) CC2D1 family Q6P1N0
Perilipin-3 (PLIN3) Perilipin family O60664
Charged multivesicular body protein 2a (CHMP2A) SNF7 family O43633
Charged multivesicular body protein 2b (CHMP2B) SNF7 family Q9UQN3
Charged multivesicular body protein 3 (CHMP3) SNF7 family Q9Y3E7
Charged multivesicular body protein 4a (CHMP4A) SNF7 family Q9BY43
Charged multivesicular body protein 4b (CHMP4B) SNF7 family Q9H444
Charged multivesicular body protein 5 (CHMP5) SNF7 family Q9NZZ3
Charged multivesicular body protein 7 (CHMP7) SNF7 family Q8WUX9
Programmed cell death 6-interacting protein (PDCD6IP) . Q8WUM4

References

1 Low-Toxicity Sulfonium-Based Probes for Cysteine-Specific Profiling in Live Cells. Anal Chem. 2022 Mar 15;94(10):4366-4372. doi: 10.1021/acs.analchem.1c05129. Epub 2022 Mar 4.
2 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
3 An Azo Coupling-Based Chemoproteomic Approach to Systematically Profile the Tyrosine Reactivity in the Human Proteome. Anal Chem. 2021 Jul 27;93(29):10334-10342. doi: 10.1021/acs.analchem.1c01935. Epub 2021 Jul 12.
4 Discovery of a Cell-Active SuTEx Ligand of Prostaglandin Reductase 2. Chembiochem. 2021 Jun 15;22(12):2134-2139. doi: 10.1002/cbic.202000879. Epub 2021 Apr 29.
5 Global targeting of functional tyrosines using sulfur-triazole exchange chemistry. Nat Chem Biol. 2020 Feb;16(2):150-159. doi: 10.1038/s41589-019-0404-5. Epub 2019 Nov 25.
6 Targeted Proteomic Approaches for Proteome-Wide Characterizations of the AMP-Binding Capacities of Kinases. J Proteome Res. 2022 Aug 5;21(8):2063-2070. doi: 10.1021/acs.jproteome.2c00225. Epub 2022 Jul 12.
7 Cyclopropenone, Cyclopropeniminium Ion, and Cyclopropenethione as Novel Electrophilic Warheads for Potential Target Discovery of Triple-Negative Breast Cancer. J Med Chem. 2023 Feb 23;66(4):2851-2864. doi: 10.1021/acs.jmedchem.2c01889. Epub 2023 Feb 10.
8 Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer. J Proteome Res. 2018 Jan 5;17(1):63-75. doi: 10.1021/acs.jproteome.7b00329. Epub 2017 Nov 22.
Mass spectrometry data entry: PXD006095 , PXD006096
9 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764
10 Tunable Amine-Reactive Electrophiles for Selective Profiling of Lysine. Angew Chem Int Ed Engl. 2022 Jan 26;61(5):e202112107. doi: 10.1002/anie.202112107. Epub 2021 Dec 16.