General Information of Target

Target ID LDTP08394
Target Name Partner and localizer of BRCA2 (PALB2)
Gene Name PALB2
Gene ID 79728
Synonyms
FANCN; Partner and localizer of BRCA2
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ
QDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQR
TDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE
EISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP
NFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVST
DNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD
TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ
RKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK
LLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVN
RSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL
KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELS
PKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPT
TDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSG
SPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE
TAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA
LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL
LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ
GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK
ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW
DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS
Target Bioclass
Other
Subcellular location
Nucleus
Function
Plays a critical role in homologous recombination repair (HRR) through its ability to recruit BRCA2 and RAD51 to DNA breaks . Strongly stimulates the DNA strand-invasion activity of RAD51, stabilizes the nucleoprotein filament against a disruptive BRC3-BRC4 polypeptide and helps RAD51 to overcome the suppressive effect of replication protein A (RPA). Functionally cooperates with RAD51AP1 in promoting of D-loop formation by RAD51. Serves as the molecular scaffold in the formation of the BRCA1-PALB2-BRCA2 complex which is essential for homologous recombination. Via its WD repeats is proposed to scaffold a HR complex containing RAD51C and BRCA2 which is thought to play a role in HR-mediated DNA repair. Essential partner of BRCA2 that promotes the localization and stability of BRCA2. Also enables its recombinational repair and checkpoint functions of BRCA2. May act by promoting stable association of BRCA2 with nuclear structures, allowing BRCA2 to escape the effects of proteasome-mediated degradation. Binds DNA with high affinity for D loop, which comprises single-stranded, double-stranded and branched DNA structures. May play a role in the extension step after strand invasion at replication-dependent DNA double-strand breaks; together with BRCA2 is involved in both POLH localization at collapsed replication forks and DNA polymerization activity.
Uniprot ID
Q86YC2
Ensemble ID
ENST00000261584.9
HGNC ID
HGNC:26144

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 3 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C755(0.92); C756(0.92)  LDD0078  [1]
IPM
 Probe Info 
C469(0.00); C828(0.00)  LDD2156  [2]
Phosphinate-6
 Probe Info 
C469(0.00); C77(0.00); C419(0.00)  LDD0018  [3]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0214  AC1 HEK-293T C162(1.05)  LDD1507  [4]
 LDCM0215  AC10 HEK-293T C162(0.98)  LDD1508  [4]
 LDCM0259  AC14 HEK-293T C162(1.14)  LDD1512  [4]
 LDCM0276  AC17 HEK-293T C162(1.07)  LDD1515  [4]
 LDCM0277  AC18 HEK-293T C162(0.94)  LDD1516  [4]
 LDCM0279  AC2 HEK-293T C162(0.84)  LDD1518  [4]
 LDCM0281  AC21 HEK-293T C396(1.14); C630(0.98)  LDD1520  [4]
 LDCM0282  AC22 HEK-293T C162(0.99)  LDD1521  [4]
 LDCM0285  AC25 HEK-293T C162(0.98)  LDD1524  [4]
 LDCM0286  AC26 HEK-293T C162(1.00)  LDD1525  [4]
 LDCM0289  AC29 HEK-293T C396(1.24); C630(0.95)  LDD1528  [4]
 LDCM0291  AC30 HEK-293T C162(1.12)  LDD1530  [4]
 LDCM0294  AC33 HEK-293T C162(0.98)  LDD1533  [4]
 LDCM0295  AC34 HEK-293T C162(0.98)  LDD1534  [4]
 LDCM0298  AC37 HEK-293T C396(1.13); C630(1.13)  LDD1537  [4]
 LDCM0299  AC38 HEK-293T C162(1.17)  LDD1538  [4]
 LDCM0303  AC41 HEK-293T C162(0.95)  LDD1542  [4]
 LDCM0304  AC42 HEK-293T C162(1.01)  LDD1543  [4]
 LDCM0307  AC45 HEK-293T C396(1.00); C630(1.01)  LDD1546  [4]
 LDCM0308  AC46 HEK-293T C162(0.97)  LDD1547  [4]
 LDCM0311  AC49 HEK-293T C162(0.88)  LDD1550  [4]
 LDCM0312  AC5 HEK-293T C396(1.52); C630(1.19)  LDD1551  [4]
 LDCM0313  AC50 HEK-293T C162(0.84)  LDD1552  [4]
 LDCM0316  AC53 HEK-293T C396(1.16); C630(1.22)  LDD1555  [4]
 LDCM0317  AC54 HEK-293T C162(1.03)  LDD1556  [4]
 LDCM0320  AC57 HEK-293T C162(1.14)  LDD1559  [4]
 LDCM0321  AC58 HEK-293T C162(0.96)  LDD1560  [4]
 LDCM0323  AC6 HEK-293T C162(1.25)  LDD1562  [4]
 LDCM0325  AC61 HEK-293T C396(1.01); C630(1.19)  LDD1564  [4]
 LDCM0326  AC62 HEK-293T C162(1.00)  LDD1565  [4]
 LDCM0248  AKOS034007472 HEK-293T C396(1.19); C630(0.93)  LDD1511  [4]
 LDCM0356  AKOS034007680 HEK-293T C162(0.94)  LDD1570  [4]
 LDCM0020  ARS-1620 HCC44 C755(0.92); C756(0.92)  LDD0078  [1]
 LDCM0367  CL1 HEK-293T C469(1.09)  LDD1571  [4]
 LDCM0368  CL10 HEK-293T C162(1.31)  LDD1572  [4]
 LDCM0369  CL100 HEK-293T C162(1.24)  LDD1573  [4]
 LDCM0370  CL101 HEK-293T C469(1.09)  LDD1574  [4]
 LDCM0373  CL104 HEK-293T C162(0.97)  LDD1577  [4]
 LDCM0374  CL105 HEK-293T C469(1.00)  LDD1578  [4]
 LDCM0377  CL108 HEK-293T C162(0.92)  LDD1581  [4]
 LDCM0378  CL109 HEK-293T C469(1.10)  LDD1582  [4]
 LDCM0382  CL112 HEK-293T C162(0.97)  LDD1586  [4]
 LDCM0383  CL113 HEK-293T C469(1.28)  LDD1587  [4]
 LDCM0386  CL116 HEK-293T C162(0.96)  LDD1590  [4]
 LDCM0387  CL117 HEK-293T C469(1.03)  LDD1591  [4]
 LDCM0391  CL120 HEK-293T C162(1.05)  LDD1595  [4]
 LDCM0392  CL121 HEK-293T C469(0.94)  LDD1596  [4]
 LDCM0395  CL124 HEK-293T C162(0.96)  LDD1599  [4]
 LDCM0396  CL125 HEK-293T C469(1.32)  LDD1600  [4]
 LDCM0399  CL128 HEK-293T C162(1.01)  LDD1603  [4]
 LDCM0400  CL13 HEK-293T C469(1.41)  LDD1604  [4]
 LDCM0403  CL16 HEK-293T C162(1.14)  LDD1607  [4]
 LDCM0404  CL17 HEK-293T C162(1.14)  LDD1608  [4]
 LDCM0405  CL18 HEK-293T C162(0.89)  LDD1609  [4]
 LDCM0409  CL21 HEK-293T C396(1.13); C630(0.88)  LDD1613  [4]
 LDCM0410  CL22 HEK-293T C162(1.20)  LDD1614  [4]
 LDCM0413  CL25 HEK-293T C469(1.20)  LDD1617  [4]
 LDCM0416  CL28 HEK-293T C162(1.35)  LDD1620  [4]
 LDCM0417  CL29 HEK-293T C162(1.02)  LDD1621  [4]
 LDCM0419  CL30 HEK-293T C162(0.95)  LDD1623  [4]
 LDCM0422  CL33 HEK-293T C396(1.18); C630(0.70)  LDD1626  [4]
 LDCM0423  CL34 HEK-293T C162(1.31)  LDD1627  [4]
 LDCM0426  CL37 HEK-293T C469(1.00)  LDD1630  [4]
 LDCM0429  CL4 HEK-293T C162(1.08)  LDD1633  [4]
 LDCM0430  CL40 HEK-293T C162(0.86)  LDD1634  [4]
 LDCM0431  CL41 HEK-293T C162(1.16)  LDD1635  [4]
 LDCM0432  CL42 HEK-293T C162(0.98)  LDD1636  [4]
 LDCM0435  CL45 HEK-293T C396(1.22); C630(0.66)  LDD1639  [4]
 LDCM0436  CL46 HEK-293T C162(1.34)  LDD1640  [4]
 LDCM0439  CL49 HEK-293T C469(1.06)  LDD1643  [4]
 LDCM0440  CL5 HEK-293T C162(1.17)  LDD1644  [4]
 LDCM0443  CL52 HEK-293T C162(1.18)  LDD1646  [4]
 LDCM0444  CL53 HEK-293T C162(1.10)  LDD1647  [4]
 LDCM0445  CL54 HEK-293T C162(1.11)  LDD1648  [4]
 LDCM0448  CL57 HEK-293T C396(1.07); C630(0.81)  LDD1651  [4]
 LDCM0449  CL58 HEK-293T C162(1.35)  LDD1652  [4]
 LDCM0451  CL6 HEK-293T C162(1.08)  LDD1654  [4]
 LDCM0453  CL61 HEK-293T C469(1.18)  LDD1656  [4]
 LDCM0456  CL64 HEK-293T C162(0.99)  LDD1659  [4]
 LDCM0457  CL65 HEK-293T C162(1.08)  LDD1660  [4]
 LDCM0458  CL66 HEK-293T C162(0.99)  LDD1661  [4]
 LDCM0461  CL69 HEK-293T C396(1.32); C630(0.66)  LDD1664  [4]
 LDCM0463  CL70 HEK-293T C162(1.14)  LDD1666  [4]
 LDCM0466  CL73 HEK-293T C469(0.90)  LDD1669  [4]
 LDCM0469  CL76 HEK-293T C162(1.10)  LDD1672  [4]
 LDCM0470  CL77 HEK-293T C162(1.06)  LDD1673  [4]
 LDCM0471  CL78 HEK-293T C162(0.92)  LDD1674  [4]
 LDCM0475  CL81 HEK-293T C396(1.33); C630(0.79)  LDD1678  [4]
 LDCM0476  CL82 HEK-293T C162(0.99)  LDD1679  [4]
 LDCM0479  CL85 HEK-293T C469(1.00)  LDD1682  [4]
 LDCM0482  CL88 HEK-293T C162(0.79)  LDD1685  [4]
 LDCM0483  CL89 HEK-293T C162(1.13)  LDD1686  [4]
 LDCM0484  CL9 HEK-293T C396(1.19); C630(0.77)  LDD1687  [4]
 LDCM0485  CL90 HEK-293T C162(0.79)  LDD1688  [4]
 LDCM0488  CL93 HEK-293T C396(1.33); C630(0.83)  LDD1691  [4]
 LDCM0489  CL94 HEK-293T C162(1.14)  LDD1692  [4]
 LDCM0492  CL97 HEK-293T C469(1.08)  LDD1695  [4]
 LDCM0022  KB02 CC-LP-1 C469(2.44)  LDD2298  [5]
 LDCM0023  KB03 CC-LP-1 C469(1.83)  LDD2715  [5]
 LDCM0024  KB05 PF-382 C469(2.76)  LDD3397  [5]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
DNA polymerase eta (POLH) DNA polymerase type-Y family Q9Y253
Ubiquitin carboxyl-terminal hydrolase 11 (USP11) Peptidase C19 family P51784
Breast cancer type 1 susceptibility protein (BRCA1) . P38398
Other
Click To Hide/Show 5 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Kelch-like ECH-associated protein 1 (KEAP1) KEAP1 family Q14145
DNA repair protein RAD51 homolog 1 (RAD51) RecA family Q06609
DNA repair protein RAD51 homolog 3 (RAD51C) RecA family O43502
DNA repair protein XRCC3 (XRCC3) RecA family O43542
Breast cancer type 2 susceptibility protein (BRCA2) . P51587

References

1 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.
2 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
3 DFT-Guided Discovery of Ethynyl-Triazolyl-Phosphinates as Modular Electrophiles for Chemoselective Cysteine Bioconjugation and Profiling. Angew Chem Int Ed Engl. 2022 Oct 10;61(41):e202205348. doi: 10.1002/anie.202205348. Epub 2022 Aug 22.
Mass spectrometry data entry: PXD033004
4 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402
5 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840