General Information of Target

Target ID LDTP08835
Target Name Protein phosphatase Mn(2+)-dependent 1K (PPM1K)
Gene Name PPM1K
Gene ID 152926
Synonyms
PP2CM; Protein phosphatase Mn(2+)-dependent 1K; EC 3.1.3.16; Branched-chain alpha-ketoacid dehydrogenase phosphatase; BCKDH; BDP; EC 3.1.3.52; PP2C domain-containing protein phosphatase 1K; PP2C-like mitochondrial protein; PP2C-type mitochondrial phosphoprotein phosphatase; PTMP; Protein phosphatase 2C family member; Protein phosphatase 2C isoform kappa; PP2C-kappa; [3-methyl-2-oxobutanoate dehydrogenase; 2-methylpropanoyl-transferring)]-phosphatase, mitochondrial
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MSTAALITLVRSGGNQVRRRVLLSSRLLQDDRRVTPTCHSSTSEPRCSRFDPDGSGSPAT
WDNFGIWDNRIDEPILLPPSIKYGKPIPKISLENVGCASQIGKRKENEDRFDFAQLTDEV
LYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSAD
ATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKC
GGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGI
NFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGAWGKYKNSEINFS
FSRSFASSGRWA
Target Bioclass
Enzyme
Family
PP2C family
Subcellular location
Mitochondrion matrix
Function
Serine/threonine-protein phosphatase component of macronutrients metabolism. Forms a functional kinase and phosphatase pair with BCKDK, serving as a metabolic regulatory node that coordinates branched-chain amino acids (BCAAs) with glucose and lipid metabolism via two distinct phosphoprotein targets: mitochondrial BCKDHA subunit of the branched-chain alpha-ketoacid dehydrogenase (BCKDH) complex and cytosolic ACLY, a lipogenic enzyme of Krebs cycle. At high levels of branched-chain ketoacids, dephosphorylates and activates mitochondrial BCKDH complex, a multisubunit complex consisting of three multimeric components each involved in different steps of BCAA catabolism: E1 composed of BCKDHA and BCKDHB, E2 core composed of DBT monomers, and E3 composed of DLD monomers. Tightly associates with the E2 component of BCKDH complex and dephosphorylates BCKDHA on Ser-337. Regulates the reversible phosphorylation of ACLY in response to changes in cellular carbohydrate abundance such as occurs during fasting to feeding metabolic transition. At fasting state, appears to dephosphorylate ACLY on Ser-455 and inactivate it. Refeeding stimulates MLXIPL/ChREBP transcription factor, leading to increased BCKDK to PPM1K expression ratio, phosphorylation and activation of ACLY that ultimately results in the generation of malonyl-CoA and oxaloacetate immediate substrates of de novo lipogenesis and gluconeogenesis, respectively. Recognizes phosphosites having SxS or RxxS motifs and strictly depends on Mn(2+) ions for the phosphatase activity. Regulates Ca(2+)-induced opening of mitochondrial transition pore and apoptotic cell death.
Uniprot ID
Q8N3J5
Ensemble ID
ENST00000608933.6
HGNC ID
HGNC:25415

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
CAL51 SNV: p.A323T .
HSC3 SNV: p.E200Q .
HT SNV: p.K85T .
HT115 SNV: p.E143D .
LS180 SNV: p.A175G .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 1 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
IA-alkyne
 Probe Info 
C97(0.63)  LDD2189  [1]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0572  Fragment10 Ramos C97(0.63)  LDD2189  [1]
 LDCM0573  Fragment11 Ramos C97(0.28)  LDD2190  [1]
 LDCM0574  Fragment12 Ramos C97(1.36)  LDD2191  [1]
 LDCM0578  Fragment27 Ramos C97(0.69)  LDD2197  [1]
 LDCM0586  Fragment28 Ramos C97(0.92)  LDD2198  [1]
 LDCM0588  Fragment30 Ramos C97(1.13)  LDD2199  [1]
 LDCM0589  Fragment31 Ramos C97(0.71)  LDD2200  [1]
 LDCM0590  Fragment32 Ramos C97(0.78)  LDD2201  [1]
 LDCM0468  Fragment33 Ramos C97(0.75)  LDD2202  [1]
 LDCM0596  Fragment38 Ramos C97(0.58)  LDD2203  [1]

References

1 Site-specific quantitative cysteine profiling with data-independent acquisition-based mass spectrometry. Methods Enzymol. 2023;679:295-322. doi: 10.1016/bs.mie.2022.07.037. Epub 2022 Sep 7.
Mass spectrometry data entry: PXD027578