General Information of Target

Target ID LDTP06957
Target Name Endoribonuclease ZC3H12A (ZC3H12A)
Gene Name ZC3H12A
Gene ID 80149
Synonyms
MCPIP; MCPIP1; Endoribonuclease ZC3H12A; EC 3.1.-.-; Monocyte chemotactic protein-induced protein 1; MCP-induced protein 1; MCPIP-1; Regnase-1; Reg1; Zinc finger CCCH domain-containing protein 12A
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MSGPCGEKPVLEASPTMSLWEFEDSHSRQGTPRPGQELAAEEASALELQMKVDFFRKLGY
SSTEIHSVLQKLGVQADTNTVLGELVKHGTATERERQTSPDPCPQLPLVPRGGGTPKAPN
LEPPLPEEEKEGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVP
SWRKEQPRPDVPITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIV
VSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLTLE
HRKQPCPYGRKCTYGIKCRFFHPERPSCPQRSVADELRANALLSPPRAPSKDKNGRRPSP
SSQSSSLLTESEQCSLDGKKLGAQASPGSRQEGLTQTYAPSGRSLAPSGGSGSSFGPTDW
LPQTLDSLPYVSQDCLDSGIGSLESQMSELWGVRGGGPGEPGPPRAPYTGYSPYGSELPA
TAAFSAFGRAMGAGHFSVPADYPPAPPAFPPREYWSEPYPLPPPTSVLQEPPVQSPGAGR
SPWGRAGSLAKEQASVYTKLCGVFPPHLVEAVMGRFPQLLDPQQLAAEILSYKSQHPSE
Target Bioclass
Enzyme
Family
ZC3H12 family
Subcellular location
Nucleus
Function
Endoribonuclease involved in various biological functions such as cellular inflammatory response and immune homeostasis, glial differentiation of neuroprogenitor cells, cell death of cardiomyocytes, adipogenesis and angiogenesis. Functions as an endoribonuclease involved in mRNA decay. Modulates the inflammatory response by promoting the degradation of a set of translationally active cytokine-induced inflammation-related mRNAs, such as IL6 and IL12B, during the early phase of inflammation. Prevents aberrant T-cell-mediated immune reaction by degradation of multiple mRNAs controlling T-cell activation, such as those encoding cytokines (IL6 and IL2), cell surface receptors (ICOS, TNFRSF4 and TNFR2) and transcription factor (REL). Inhibits cooperatively with ZC3H12A the differentiation of helper T cells Th17 in lungs. They repress target mRNA encoding the Th17 cell-promoting factors IL6, ICOS, REL, IRF4, NFKBID and NFKBIZ. The cooperation requires RNA-binding by RC3H1 and the nuclease activity of ZC3H12A. Together with RC3H1, destabilizes TNFRSF4/OX40 mRNA by binding to the conserved stem loop structure in its 3'UTR. Self regulates by destabilizing its own mRNA. Cleaves mRNA harboring a stem-loop (SL), often located in their 3'-UTRs, during the early phase of inflammation in a helicase UPF1-dependent manner. Plays a role in the inhibition of microRNAs (miRNAs) biogenesis. Cleaves the terminal loop of a set of precursor miRNAs (pre-miRNAs) important for the regulation of the inflammatory response leading to their degradation, and thus preventing the biosynthesis of mature miRNAs. Also plays a role in promoting angiogenesis in response to inflammatory cytokines by inhibiting the production of antiangiogenic microRNAs via its anti-dicer RNase activity. Affects the overall ubiquitination of cellular proteins. Positively regulates deubiquitinase activity promoting the cleavage at 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains on TNF receptor-associated factors (TRAFs), preventing JNK and NF-kappa-B signaling pathway activation, and hence negatively regulating macrophage-mediated inflammatory response and immune homeostasis. Induces also deubiquitination of the transcription factor HIF1A, probably leading to its stabilization and nuclear import, thereby positively regulating the expression of proangiogenic HIF1A-targeted genes. Involved in a TANK-dependent negative feedback response to attenuate NF-kappaB activation through the deubiquitination of IKBKG or TRAF6 in response to interleukin-1-beta (IL1B) stimulation or upon DNA damage. Prevents stress granule (SGs) formation and promotes macrophage apoptosis under stress conditions, including arsenite-induced oxidative stress, heat shock and energy deprivation. Plays a role in the regulation of macrophage polarization; promotes IL4-induced polarization of macrophages M1 into anti-inflammatory M2 state. May also act as a transcription factor that regulates the expression of multiple genes involved in inflammatory response, angiogenesis, adipogenesis and apoptosis. Functions as a positive regulator of glial differentiation of neuroprogenitor cells through an amyloid precursor protein (APP)-dependent signaling pathway. Attenuates septic myocardial contractile dysfunction in response to lipopolysaccharide (LPS) by reducing I-kappa-B-kinase (IKK)-mediated NF-kappa-B activation, and hence myocardial pro-inflammatory cytokine production.; (Microbial infection) Binds to Japanese encephalitis virus (JEV) and Dengue virus (DEN) RNAs.; (Microbial infection) Exhibits antiviral activity against HIV-1 in lymphocytes by decreasing the abundance of HIV-1 viral RNA species.
Uniprot ID
Q5D1E8
Ensemble ID
ENST00000373087.7
HGNC ID
HGNC:26259

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 4 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C306(1.29)  LDD3403  [1]
IA-alkyne
 Probe Info 
C328(5.22)  LDD1703  [2]
IPM
 Probe Info 
N.A.  LDD2156  [3]
NAIA_5
 Probe Info 
N.A.  LDD2223  [4]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0632  CL-Sc Hep-G2 C5(0.38)  LDD2227  [4]
 LDCM0369  CL100 HEK-293T C328(0.83)  LDD1573  [5]
 LDCM0372  CL103 HEK-293T C328(1.07)  LDD1576  [5]
 LDCM0373  CL104 HEK-293T C328(0.97)  LDD1577  [5]
 LDCM0376  CL107 HEK-293T C328(0.79)  LDD1580  [5]
 LDCM0377  CL108 HEK-293T C328(0.79)  LDD1581  [5]
 LDCM0381  CL111 HEK-293T C328(1.05)  LDD1585  [5]
 LDCM0382  CL112 HEK-293T C328(1.00)  LDD1586  [5]
 LDCM0385  CL115 HEK-293T C328(0.98)  LDD1589  [5]
 LDCM0386  CL116 HEK-293T C328(0.93)  LDD1590  [5]
 LDCM0389  CL119 HEK-293T C328(1.04)  LDD1593  [5]
 LDCM0391  CL120 HEK-293T C328(0.90)  LDD1595  [5]
 LDCM0394  CL123 HEK-293T C328(0.97)  LDD1598  [5]
 LDCM0395  CL124 HEK-293T C328(0.89)  LDD1599  [5]
 LDCM0398  CL127 HEK-293T C328(0.90)  LDD1602  [5]
 LDCM0399  CL128 HEK-293T C328(1.16)  LDD1603  [5]
 LDCM0402  CL15 HEK-293T C328(0.80)  LDD1606  [5]
 LDCM0403  CL16 HEK-293T C328(0.90)  LDD1607  [5]
 LDCM0415  CL27 HEK-293T C328(1.03)  LDD1619  [5]
 LDCM0416  CL28 HEK-293T C328(0.95)  LDD1620  [5]
 LDCM0418  CL3 HEK-293T C328(0.93)  LDD1622  [5]
 LDCM0428  CL39 HEK-293T C328(1.10)  LDD1632  [5]
 LDCM0429  CL4 HEK-293T C328(0.87)  LDD1633  [5]
 LDCM0430  CL40 HEK-293T C328(0.77)  LDD1634  [5]
 LDCM0443  CL52 HEK-293T C328(1.11)  LDD1646  [5]
 LDCM0455  CL63 HEK-293T C328(0.97)  LDD1658  [5]
 LDCM0456  CL64 HEK-293T C328(1.02)  LDD1659  [5]
 LDCM0469  CL76 HEK-293T C328(0.99)  LDD1672  [5]
 LDCM0481  CL87 HEK-293T C328(0.96)  LDD1684  [5]
 LDCM0482  CL88 HEK-293T C328(1.10)  LDD1685  [5]
 LDCM0494  CL99 HEK-293T C328(1.08)  LDD1697  [5]
 LDCM0495  E2913 HEK-293T C328(1.14)  LDD1698  [5]
 LDCM0468  Fragment33 HEK-293T C328(0.93)  LDD1671  [5]
 LDCM0022  KB02 T cell C328(5.22)  LDD1703  [2]
 LDCM0023  KB03 697 C306(1.75)  LDD2662  [1]
 LDCM0024  KB05 Reh C306(1.29)  LDD3403  [1]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 3 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Prolyl 4-hydroxylase subunit alpha-3 (P4HA3) P4HA family Q7Z4N8
Ubiquitin carboxyl-terminal hydrolase 10 (USP10) Peptidase C19 family Q14694
Interleukin-1 receptor-associated kinase-like 2 (IRAK2) TKL Ser/Thr protein kinase family O43187
Transcription factor
Click To Hide/Show 1 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Mothers against decapentaplegic homolog 3 (SMAD3) Dwarfin/SMAD family P84022
Other
Click To Hide/Show 4 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Alpha-hemoglobin-stabilizing protein (AHSP) AHSP family Q9NZD4
DnaJ homolog subfamily B member 13 (DNAJB13) . P59910
F-box/WD repeat-containing protein 1A (BTRC) . Q9Y297
NF-kappa-B essential modulator (IKBKG) . Q9Y6K9

References

1 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
2 An Activity-Guided Map of Electrophile-Cysteine Interactions in Primary Human T Cells. Cell. 2020 Aug 20;182(4):1009-1026.e29. doi: 10.1016/j.cell.2020.07.001. Epub 2020 Jul 29.
3 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
4 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
5 Accelerating multiplexed profiling of protein-ligand interactions: High-throughput plate-based reactive cysteine profiling with minimal input. Cell Chem Biol. 2024 Mar 21;31(3):565-576.e4. doi: 10.1016/j.chembiol.2023.11.015. Epub 2023 Dec 19.
Mass spectrometry data entry: PXD044402