General Information of Target

Target ID LDTP15040
Target Name GTPase-activating Rap/Ran-GAP domain-like protein 3 (GARNL3)
Gene Name GARNL3
Gene ID 84253
Synonyms
GTPase-activating Rap/Ran-GAP domain-like protein 3
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
ASKVFITFEVKGKEKRKKHL
Target Bioclass
Other
Family
GARNL3 family
Uniprot ID
Q5VVW2
Ensemble ID
ENST00000373387.9
HGNC ID
HGNC:25425

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
CASKI SNV: p.E312K .
CCK81 SNV: p.I724V .
DOTC24510 SNV: p.R83Q .
G415 SNV: p.S847P .
HCC1937 SNV: p.D401H .
HEC1 SNV: p.R396C DBIA    Probe Info 
HEC1B SNV: p.R396C .
KARPAS422 SNV: p.S847Ter .
KYSE180 Substitution: p.P390S .
REH Deletion: p.L104Ter .
SH4 SNV: p.L543R .
SUPT1 Deletion: p.L104Ter .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 5 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
ONAyne
 Probe Info 
K395(3.72)  LDD0275  [1]
DBIA
 Probe Info 
C152(2.57)  LDD3340  [2]
Acrolein
 Probe Info 
N.A.  LDD0222  [3]
IPM
 Probe Info 
N.A.  LDD2156  [4]
STPyne
 Probe Info 
N.A.  LDD0009  [5]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0108  Chloroacetamide HeLa N.A.  LDD0222  [3]
 LDCM0022  KB02 A204 C152(1.84)  LDD2252  [2]
 LDCM0023  KB03 A204 C152(2.91)  LDD2669  [2]
 LDCM0024  KB05 NB1 C152(2.57)  LDD3340  [2]

References

1 A Paal-Knorr agent for chemoproteomic profiling of targets of isoketals in cells. Chem Sci. 2021 Oct 15;12(43):14557-14563. doi: 10.1039/d1sc02230j. eCollection 2021 Nov 10.
Mass spectrometry data entry: PXD028270
2 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
3 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
4 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
5 A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol. 2022 Aug;18(8):904-912. doi: 10.1038/s41589-022-01074-8. Epub 2022 Jul 21.
Mass spectrometry data entry: PXD027758 , PXD027755 , PXD027760 , PXD027762 , PXD027756 , PXD027591 , PXD007149 , PXD030064 , PXD032392 , PXD027789 , PXD027767 , PXD027764