General Information of Target

Target ID LDTP12807
Target Name Sphingomyelin phosphodiesterase 3 (SMPD3)
Gene Name SMPD3
Gene ID 55512
Synonyms
Sphingomyelin phosphodiesterase 3; EC 3.1.4.12; Neutral sphingomyelinase 2; nSMase-2; nSMase2; Neutral sphingomyelinase II
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG
NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG
GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH
Target Bioclass
Enzyme
Family
Neutral sphingomyelinase family
Subcellular location
Golgi apparatus membrane
Function
Catalyzes the hydrolysis of sphingomyelin to form ceramide and phosphocholine. Ceramide mediates numerous cellular functions, such as apoptosis and growth arrest, and is capable of regulating these 2 cellular events independently. Also hydrolyzes sphingosylphosphocholine. Regulates the cell cycle by acting as a growth suppressor in confluent cells. Probably acts as a regulator of postnatal development and participates in bone and dentin mineralization. Binds to anionic phospholipids (APLs) such as phosphatidylserine (PS) and phosphatidic acid (PA) that modulate enzymatic activity and subcellular location. May be involved in IL-1-beta-induced JNK activation in hepatocytes. May act as a mediator in transcriptional regulation of NOS2/iNOS via the NF-kappa-B activation under inflammatory conditions.
Uniprot ID
Q9NY59
Ensemble ID
ENST00000219334.10
HGNC ID
HGNC:14240
ChEMBL ID
CHEMBL4523470

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
A3KAW SNV: p.R93Q .
FTC133 SNV: p.G406S .
JURKAT SNV: p.G308W .
LS123 Insertion: p.H639_L640insPPP .
MEWO SNV: p.R268K .
MFE319 SNV: p.C402Y .
RKO SNV: p.C132Y .
SHP77 SNV: p.E316Ter .
SKMEL2 SNV: p.T530I .
SNU449 SNV: p.E240V .
SUPT1 SNV: p.G195E .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 1 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
4-Iodoacetamidophenylacetylene
 Probe Info 
C125(0.00); C132(0.00)  LDD0038  [1]

References

1 Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23.
Mass spectrometry data entry: PXD028853