General Information of Target

Target ID LDTP11499
Target Name Tripartite motif-containing protein 55 (TRIM55)
Gene Name TRIM55
Gene ID 84675
Synonyms
MURF2; RNF29; Tripartite motif-containing protein 55; EC 2.3.2.27; Muscle-specific RING finger protein 2; MuRF-2; MuRF2; RING finger protein 29
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAM
LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQE
EKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAG
RPEPGYESMEQFTVRVEHVAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP
Target Bioclass
Enzyme
Subcellular location
Cytoplasm
Function
E3 ubiquitin ligase that plays an important role in regulating cardiac development and contractility, muscle growth, metabolism, and fiber-type differentiation. Acts as a critical factor that regulates cardiomyocyte size during development in concert with TRIM63 by regulating E2F1-mediated gene expression. Plays a role in apoptosis induction in cardiomyocytes by promoting ubiquitination of the DUSP1 phosphatase. Promotes non-canonical NF-kappa-B signaling and B-cell-mediated immune responses by mediating NFKB2 'Lys-48'-linked ubiquitination and processing. In turn, NFKB2 is further processed by valosin-containing protein/VCP, an ATPase that mediates ubiquitin-dependent protein degradation by the proteasome. May play a role in preventing macrophages from producing inflammatory factors and migrating by downregulating the level of nuclear NF-kappa-B subunit RELA. Modifies also PPARG via polyubiquitination and accelerates PPARG proteasomal degradation to inhibit its activity.
Uniprot ID
Q9BYV6
Ensemble ID
ENST00000276573.11
HGNC ID
HGNC:14215

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
BXPC3 SNV: p.C139S .
HCT116 SNV: p.I324V .
MFE296 SNV: p.E317K .
MOLT4 SNV: p.E333D .
NCIH196 SNV: p.K240Q .
NCIH358 SNV: p.N280K .
UACC62 SNV: p.V189G .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 1 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
DBIA
 Probe Info 
C50(1.77)  LDD3378  [1]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0022  KB02 769-P C50(1.17)  LDD2246  [1]
 LDCM0023  KB03 769-P C50(2.09)  LDD2663  [1]
 LDCM0024  KB05 OS-RC-2 C50(1.77)  LDD3378  [1]

References

1 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840