General Information of Target

Target ID LDTP08547
Target Name Iron-sulfur cluster co-chaperone protein HscB (HSCB)
Gene Name HSCB
Gene ID 150274
Synonyms
DNAJC20; HSC20; Iron-sulfur cluster co-chaperone protein HscB; DnaJ homolog subfamily C member 20) [Cleaved into: Iron-sulfur cluster co-chaperone protein HscB, cytoplasmic; C-HSC20; Iron-sulfur cluster co-chaperone protein HscB, mitochondrial]
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
Target Bioclass
Other
Family
HscB family
Subcellular location
Cytoplasm; Mitochondrion
Function
[Iron-sulfur cluster co-chaperone protein HscB, mitochondrial]: Acts as a co-chaperone in iron-sulfur cluster assembly in mitochondria. Required for incorporation of iron-sulfur clusters into SDHB, the iron-sulfur protein subunit of succinate dehydrogenase that is involved in complex II of the mitochondrial electron transport chain. Recruited to SDHB by interaction with SDHAF1 which first binds SDHB and then recruits the iron-sulfur transfer complex formed by HSC20, HSPA9 and ISCU through direct binding to HSC20. Plays an essential role in hematopoiesis.; [Iron-sulfur cluster co-chaperone protein HscB, cytoplasmic]: Acts as a co-chaperone in iron-sulfur cluster assembly in the cytoplasm. Also mediates complex formation between components of the cytosolic iron-sulfur biogenesis pathway and the CIA targeting complex composed of CIAO1, DIPK1B/FAM69B and MMS19 by binding directly to the scaffold protein ISCU and to CIAO1. This facilitates iron-sulfur cluster insertion into a number of cytoplasmic and nuclear proteins including POLD1, ELP3, DPYD and PPAT.
Uniprot ID
Q8IWL3
Ensemble ID
ENST00000216027.8
HGNC ID
HGNC:28913

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 8 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
m-APA
 Probe Info 
13.02  LDD0402  [1]
Probe 1
 Probe Info 
Y155(18.99); Y220(16.95)  LDD3495  [2]
DBIA
 Probe Info 
C28(3.20)  LDD3331  [3]
IA-alkyne
 Probe Info 
C28(0.93)  LDD2207  [4]
IPM
 Probe Info 
N.A.  LDD2156  [5]
Acrolein
 Probe Info 
N.A.  LDD0217  [6]
Methacrolein
 Probe Info 
N.A.  LDD0218  [6]
NAIA_5
 Probe Info 
C79(0.00); C28(0.00)  LDD2223  [7]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0156  Aniline NCI-H1299 13.66  LDD0403  [1]
 LDCM0020  ARS-1620 HCC44 C58(1.65); C61(1.65); C41(1.40); C44(1.40)  LDD2171  [8]
 LDCM0108  Chloroacetamide HeLa N.A.  LDD0222  [6]
 LDCM0107  IAA HeLa N.A.  LDD0221  [6]
 LDCM0022  KB02 Daoy C28(1.66)  LDD2314  [3]
 LDCM0023  KB03 D283 Med C28(1.03)  LDD2729  [3]
 LDCM0024  KB05 MKN-1 C28(3.20)  LDD3331  [3]
 LDCM0628  OTUB2-COV-1 HEK-293T C28(0.93)  LDD2207  [4]
 LDCM0021  THZ1 HCT 116 C58(1.65); C61(1.65); C41(1.40); C44(1.40)  LDD2173  [8]

The Interaction Atlas With This Target

The Protein(s) Related To This Target

Enzyme
Click To Hide/Show 8 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Bifunctional glutamate/proline--tRNA ligase (EPRS1) Class-I aminoacyl-tRNA synthetase family P07814
NADH dehydrogenase flavoprotein 2, mitochondrial (NDUFV2) Complex I 24 kDa subunit family P19404
Probable helicase with zinc finger domain (HELZ) DNA2/NAM7 helicase family P42694
Electron transfer flavoprotein subunit alpha, mitochondrial (ETFA) ETF alpha-subunit/FixB family P13804
Glutaredoxin-related protein 5, mitochondrial (GLRX5) Glutaredoxin family Q86SX6
Ribosyldihydronicotinamide dehydrogenase [quinone] (NQO2) NAD(P)H dehydrogenase (quinone) family P16083
Succinate dehydrogenase iron-sulfur subunit, mitochondrial (SDHB) Succinate dehydrogenase/fumarate reductase iron-sulfur protein family P21912
Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial (SUCLG2) Succinate/malate CoA ligase beta subunit family Q96I99
Other
Click To Hide/Show 5 Protein(s) Interacting with This Target
Protein name Family Uniprot ID
Complex III assembly factor LYRM7 (LYRM7) Complex I LYR family Q5U5X0
Succinate dehydrogenase assembly factor 1, mitochondrial (SDHAF1) Complex I LYR family A6NFY7
Stress-70 protein, mitochondrial (HSPA9) Heat shock protein 70 family P38646
Iron-sulfur cluster co-chaperone protein HscB (HSCB) HscB family Q8IWL3
Type-1 angiotensin II receptor-associated protein (AGTRAP) . Q6RW13

References

1 Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein. Chem Res Toxicol. 2019 Mar 18;32(3):467-473. doi: 10.1021/acs.chemrestox.8b00343. Epub 2019 Jan 15.
2 An Azo Coupling-Based Chemoproteomic Approach to Systematically Profile the Tyrosine Reactivity in the Human Proteome. Anal Chem. 2021 Jul 27;93(29):10334-10342. doi: 10.1021/acs.analchem.1c01935. Epub 2021 Jul 12.
3 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840
4 Rapid Covalent-Probe Discovery by Electrophile-Fragment Screening. J Am Chem Soc. 2019 Jun 5;141(22):8951-8968. doi: 10.1021/jacs.9b02822. Epub 2019 May 22.
5 Benchmarking Cleavable Biotin Tags for Peptide-Centric Chemoproteomics. J Proteome Res. 2022 May 6;21(5):1349-1358. doi: 10.1021/acs.jproteome.2c00174. Epub 2022 Apr 25.
Mass spectrometry data entry: PXD031019
6 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
7 N-Acryloylindole-alkyne (NAIA) enables imaging and profiling new ligandable cysteines and oxidized thiols by chemoproteomics. Nat Commun. 2023 Jun 15;14(1):3564. doi: 10.1038/s41467-023-39268-w.
Mass spectrometry data entry: PXD041264
8 Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nat Biotechnol. 2021 May;39(5):630-641. doi: 10.1038/s41587-020-00778-3. Epub 2021 Jan 4.