General Information of Target

Target ID LDTP04773
Target Name Histone H2B type F-S (H2BC12L)
Gene Name H2BC12L
Gene ID 102724334
Synonyms
H2BFS; H2BS1; Histone H2B type F-S; H2B-clustered histone 12 like; H2B.S histone 1; Histone H2B.s; H2B/s
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MPEPAKSAPAPKKGSKKAVTKAQKKDGRKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
GIMNSFVNDIFERIAGEASRLPHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
KYTSAK
Target Bioclass
Other
Family
Histone H2B family
Subcellular location
Nucleus
Function
Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.; Has broad antibacterial activity. May contribute to the formation of the functional antimicrobial barrier of the colonic epithelium, and to the bactericidal activity of amniotic fluid.
Uniprot ID
P57053
Ensemble ID
ENST00000599962.2
HGNC ID
HGNC:4762

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 5 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
STPyne
 Probe Info 
K58(19.71); K109(20.00); K121(11.96); K44(20.00)  LDD2217  [1]
Acrolein
 Probe Info 
H110(0.00); H50(0.00)  LDD0217  [2]
Crotonaldehyde
 Probe Info 
H50(0.00); H110(0.00)  LDD0219  [2]
Methacrolein
 Probe Info 
H50(0.00); H110(0.00); K109(0.00); K117(0.00)  LDD0218  [2]
HHS-465
 Probe Info 
K109(0.00); K117(0.00); K12(0.00); K21(0.00)  LDD2240  [3]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0108  Chloroacetamide HeLa H50(0.00); H110(0.00); K117(0.00)  LDD0222  [2]
 LDCM0107  IAA HeLa H50(0.00); H110(0.00); K6(0.00)  LDD0221  [2]
 LDCM0109  NEM HeLa H110(0.00); H50(0.00)  LDD0223  [2]

References

1 Global profiling of lysine reactivity and ligandability in the human proteome. Nat Chem. 2017 Dec;9(12):1181-1190. doi: 10.1038/nchem.2826. Epub 2017 Jul 31.
2 ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome. J Am Chem Soc. 2023 Mar 8;145(9):5252-5260. doi: 10.1021/jacs.2c12653. Epub 2023 Feb 27.
3 Global profiling identifies a stress-responsive tyrosine site on EDC3 regulating biomolecular condensate formation. Cell Chem Biol. 2022 Dec 15;29(12):1709-1720.e7. doi: 10.1016/j.chembiol.2022.11.008. Epub 2022 Dec 6.
Mass spectrometry data entry: PXD038010