General Information of Target

Target ID LDTP04694
Target Name Cadherin-6 (CDH6)
Gene Name CDH6
Gene ID 1004
Synonyms
Cadherin-6; Kidney cadherin; K-cadherin
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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Sequence
MRTYRYFLLLFWVGQPYPTLSTPLSKRTSGFPAKKRALELSGNSKNELNRSKRSWMWNQF
FLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE
KPVYILRAQAINRRTGRPVEPESEFIIKIHDINDNEPIFTKEVYTATVPEMSDVGTFVVQ
VTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKD
MGGQMGGLSGTTTVNITLTDVNDNPPRFPQSTYQFKTPESSPPGTPIGRIKASDADVGEN
AEIEYSITDGEGLDMFDVITDQETQEGIITVKKLLDFEKKKVYTLKVEASNPYVEPRFLY
LGPFKDSATVRIVVEDVDEPPVFSKLAYILQIREDAQINTTIGSVTAQDPDAARNPVKYS
VDRHTDMDRIFNIDSGNGSIFTSKLLDRETLLWHNITVIATEINNPKQSSRVPLYIKVLD
VNDNAPEFAEFYETFVCEKAKADQLIQTLHAVDKDDPYSGHQFSFSLAPEAASGSNFTIQ
DNKDNTAGILTRKNGYNRHEMSTYLLPVVISDNDYPVQSSTGTVTVRVCACDHHGNMQSC
HAEALIHPTGLSTGALVAILLCIVILLVTVVLFAALRRQRKKEPLIISKEDIRDNIVSYN
DEGGGEEDTQAFDIGTLRNPEAIEDNKLRRDIVPEALFLPRRTPTARDNTDVRDFINQRL
KENDTDPTAPPYDSLATYAYEGTGSVADSLSSLESVTTDADQDYDYLSDWGPRFKKLADM
YGGVDSDKDS
Target Type
Clinical trial
Target Bioclass
Other
Subcellular location
Cell membrane
Function
Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.
TTD ID
T63164
Uniprot ID
P55285
DrugMap ID
TT9QHUK
Ensemble ID
ENST00000265071.3
HGNC ID
HGNC:1765

Target Site Mutations in Different Cell Lines

Cell line Mutation details Probe for labeling this protein in this cell
A431 SNV: p.D294H .
A498 SNV: p.V235L .
CCK81 SNV: p.G298E .
COLO792 SNV: p.S524L .
CORL88 SNV: p.G136R .
DETROIT562 Deletion: p.F441Ter .
HCT15 SNV: p.S212L .
HEC1 SNV: p.A747V .
MCC13 SNV: p.S524L .
MELJUSO SNV: p.G742S .
MEWO SNV: p.K121Ter .
MOLT4 Deletion: p.E643SfsTer3 .
NALM6 SNV: p.P727A .
NCIH1793 SNV: p.Y71Ter; p.E754Ter .
NCIH2286 SNV: p.R690K .
NCIH2291 SNV: p.Y353C .
SNU1 SNV: p.A295T .
SUIT2 SNV: p.G614A .
SW1783 SNV: p.G175S .
TE4 SNV: p.N484K .
UACC257 SNV: p.R226Ter .
UACC62 SNV: p.D428N .

Probe(s) Labeling This Target

ABPP Probe
Click To Hide/Show 2 Probe Related to This Target
Probe name Structure Binding Site(Ratio) Interaction ID Ref
OPA-S-S-alkyne
 Probe Info 
K365(0.61); K418(1.11); K276(1.67); K121(4.12)  LDD3494  [1]
DBIA
 Probe Info 
C497(2.04)  LDD3368  [2]

Competitor(s) Related to This Target

Competitor ID Name Cell line Binding Site(Ratio) Interaction ID Ref
 LDCM0022  KB02 EFO-27 C497(0.93)  LDD2322  [2]
 LDCM0023  KB03 ICC10 C497(1.95)  LDD2796  [2]
 LDCM0024  KB05 OAW-28 C497(2.04)  LDD3368  [2]

References

1 A chemical proteomics approach for global mapping of functional lysines on cell surface of living cell. Nat Commun. 2024 Apr 8;15(1):2997. doi: 10.1038/s41467-024-47033-w.
Mass spectrometry data entry: PXD042888
2 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability. Cell. 2024 May 9;187(10):2536-2556.e30. doi: 10.1016/j.cell.2024.03.027. Epub 2024 Apr 22.
Mass spectrometry data entry: PXD047840